Wall clock time and date at job start Tue Mar 31 2020 12:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35673 * 117.00064 * 2 1 4 4 C 1.38618 * 120.16369 * 0.02562 * 3 2 1 5 5 C 1.38125 * 120.11003 * 179.97438 * 4 3 2 6 6 C 1.38574 * 120.44161 * 359.97438 * 5 4 3 7 7 C 1.37743 * 120.32707 * 0.02562 * 6 5 4 8 8 C 1.39952 * 119.87614 * 359.97438 * 7 6 5 9 9 C 1.46898 * 120.21478 * 180.02562 * 8 7 6 10 10 C 1.50690 * 120.00238 * 255.00467 * 9 8 7 11 11 C 1.35115 * 119.99729 * 75.00357 * 9 8 7 12 12 C 1.41763 * 120.00167 * 359.97438 * 11 9 8 13 13 O 1.21646 * 120.00204 * 0.02562 * 12 11 9 14 14 O 1.34934 * 120.00496 * 180.02562 * 12 11 9 15 15 C 1.42901 * 117.00564 * 180.02562 * 14 12 11 16 16 C 1.52993 * 109.47137 * 179.97438 * 15 14 12 17 17 O 1.42910 * 109.47051 * 65.00269 * 16 15 14 18 18 C 1.42898 * 113.99828 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46975 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99980 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00123 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99962 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00201 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46946 * 60.00019 * 23 21 19 25 25 H 1.48491 * 109.47135 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47096 * 300.00424 * 23 21 19 27 27 H 1.08998 * 109.47173 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47464 * 300.00025 * 1 2 3 29 29 H 1.09000 * 109.47241 * 60.00029 * 1 2 3 30 30 H 1.07995 * 119.94188 * 0.25370 * 4 3 2 31 31 H 1.08002 * 119.77583 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.83661 * 179.97438 * 6 5 4 33 33 H 1.07998 * 120.05820 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47088 * 89.99715 * 10 9 8 35 35 H 1.09000 * 109.47114 * 209.99656 * 10 9 8 36 36 H 1.08998 * 109.47246 * 329.99673 * 10 9 8 37 37 H 1.08003 * 120.00209 * 180.02562 * 11 9 8 38 38 H 1.08999 * 109.46710 * 300.00033 * 15 14 12 39 39 H 1.08995 * 109.46651 * 59.99552 * 15 14 12 40 40 H 1.09003 * 109.46883 * 184.99638 * 16 15 14 41 41 H 1.08995 * 109.47577 * 304.99998 * 16 15 14 42 42 H 1.09002 * 109.47325 * 299.99907 * 18 17 16 43 43 H 1.09003 * 109.47298 * 59.99832 * 18 17 16 44 44 H 0.96997 * 120.00073 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2933 2.3736 0.0005 5 6 1.9216 3.6037 0.0011 6 6 3.3049 3.6855 0.0016 7 6 4.0694 2.5398 0.0011 8 6 3.4469 1.2863 0.0005 9 6 4.2551 0.0596 0.0006 10 6 4.3881 -0.7551 -1.2601 11 6 4.8791 -0.3382 1.1310 12 6 4.7544 0.4285 2.3169 13 8 4.0852 1.4443 2.3169 14 8 5.3780 0.0315 3.4457 15 6 5.2084 0.8518 4.6035 16 6 5.9828 0.2459 5.7756 17 8 7.3827 0.2800 5.4901 18 6 8.2008 -0.2650 6.5273 19 6 9.6496 -0.1788 6.1217 20 1 9.9188 0.2496 5.1675 21 6 10.6317 -0.6470 6.9688 22 7 10.3039 -1.1692 8.1305 23 14 12.4275 -0.5409 6.4658 24 1 12.7954 0.8801 6.2407 25 1 13.2776 -1.1082 7.5431 26 1 12.6371 -1.3107 5.2134 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 0.2148 2.3190 0.0051 31 1 1.3307 4.5077 0.0011 32 1 3.7859 4.6525 0.0016 33 1 5.1472 2.6086 0.0019 34 1 5.2492 -0.4053 -1.8296 35 1 4.5257 -1.8050 -1.0014 36 1 3.4857 -0.6443 -1.8613 37 1 5.4736 -1.2399 1.1310 38 1 5.5854 1.8535 4.3974 39 1 4.1499 0.9071 4.8575 40 1 5.7823 0.8212 6.6796 41 1 5.6674 -0.7867 5.9246 42 1 8.0463 0.2999 7.4466 43 1 7.9314 -1.3082 6.6923 44 1 10.9948 -1.4982 8.7265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815204868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:57 Heat of formation + Delta-G solvation = -124.334903 kcal Electronic energy + Delta-G solvation = -26270.228342 eV Core-core repulsion = 22347.053821 eV Total energy + Delta-G solvation = -3923.174521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74762 -39.94209 -37.77219 -36.99187 -36.09031 -34.98046 -32.73691 -30.69966 -30.30058 -29.91875 -28.45374 -27.50780 -26.83111 -23.84913 -22.65023 -22.27528 -22.14390 -21.28552 -19.28198 -18.13164 -17.67218 -16.65173 -16.46789 -16.27960 -16.16417 -15.97791 -15.25112 -15.10421 -14.65393 -14.49815 -14.26387 -14.04171 -13.94495 -13.72668 -13.33903 -12.95782 -12.75746 -12.61785 -12.54942 -12.30317 -12.14725 -11.85312 -11.67243 -11.38565 -11.31301 -10.99920 -10.88125 -10.80806 -10.69198 -10.33710 -10.18467 -10.01166 -9.39348 -9.10640 -8.83430 -8.73887 -8.19252 -8.16929 -6.09131 -4.10691 0.79207 1.28881 1.36905 3.03145 3.14934 3.16989 3.34121 3.36359 3.40615 3.63014 4.33881 4.35514 4.63569 4.76138 4.78036 4.83345 4.87055 4.91997 5.09685 5.19232 5.21075 5.27203 5.28041 5.32052 5.36189 5.37473 5.51160 5.56567 5.66151 5.74498 5.95108 5.96288 6.00238 6.11197 6.17282 6.24820 6.31476 6.44617 6.62790 6.79288 7.09662 7.20223 7.43674 7.80891 8.09068 8.16202 8.57153 9.01903 9.53832 11.02458 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002369 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.356551 B =11818.100068 C =11934.668831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.140 3.860 4 C -0.209 4.209 5 C -0.079 4.079 6 C -0.152 4.152 7 C -0.037 4.037 8 C -0.076 4.076 9 C 0.035 3.965 10 C -0.120 4.120 11 C -0.199 4.199 12 C 0.491 3.509 13 O -0.506 6.506 14 O -0.336 6.336 15 C 0.076 3.924 16 C 0.063 3.937 17 O -0.390 6.390 18 C 0.194 3.806 19 C -0.515 4.515 20 H 0.066 0.934 21 C 0.056 3.944 22 N -0.899 5.899 23 Si 0.909 3.091 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.006 0.994 43 H 0.007 0.993 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.970 4.231 -19.927 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.094 3.906 4 C -0.228 4.228 5 C -0.097 4.097 6 C -0.170 4.170 7 C -0.056 4.056 8 C -0.077 4.077 9 C 0.034 3.966 10 C -0.176 4.176 11 C -0.217 4.217 12 C 0.339 3.661 13 O -0.398 6.398 14 O -0.253 6.253 15 C 0.002 3.998 16 C -0.015 4.015 17 O -0.310 6.310 18 C 0.120 3.880 19 C -0.553 4.553 20 H 0.084 0.916 21 C -0.145 4.145 22 N -0.539 5.539 23 Si 0.736 3.264 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.162 0.838 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.914 4.318 -19.876 29.173 hybrid contribution 0.517 0.141 0.500 0.733 sum -20.396 4.458 -19.376 28.483 Atomic orbital electron populations 1.23041 0.78500 1.03869 1.01259 1.86014 1.21207 1.26926 1.88611 1.18884 0.90812 0.84260 0.96609 1.21034 0.99598 0.92301 1.09818 1.20924 0.94669 0.96728 0.97399 1.20866 0.93770 0.98234 1.04171 1.20890 0.99488 0.90343 0.94838 1.18010 0.89563 0.93291 1.06832 1.21065 0.89370 0.91612 0.94597 1.20961 1.03189 0.99375 0.94110 1.21279 1.06450 1.03347 0.90656 1.20041 0.77094 0.84211 0.84752 1.90925 1.38293 1.25275 1.85295 1.86305 1.67219 1.52559 1.19168 1.22723 0.99335 0.94670 0.83117 1.22318 0.85325 0.99743 0.94112 1.87917 1.13410 1.83784 1.45919 1.20224 0.89557 0.92671 0.85528 1.21019 0.89755 1.40335 1.04161 0.91563 1.24952 0.99729 0.95069 0.94770 1.69953 1.33827 1.40831 1.09252 0.86379 0.83350 0.78544 0.78112 1.20018 1.21161 1.19974 0.88278 0.92700 0.92749 0.85700 0.86111 0.85948 0.85791 0.89745 0.90270 0.90632 0.83754 0.90962 0.91043 0.92193 0.93319 0.97663 0.97528 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.47 9.95 -18.72 -0.19 -3.66 16 3 C 0.14 1.68 6.71 -38.62 -0.26 1.42 16 4 C -0.21 -2.18 9.03 -39.48 -0.36 -2.54 16 5 C -0.08 -0.80 10.03 -39.50 -0.40 -1.20 16 6 C -0.15 -1.67 10.02 -39.64 -0.40 -2.06 16 7 C -0.04 -0.46 7.93 -39.12 -0.31 -0.77 16 8 C -0.08 -0.96 3.31 -104.93 -0.35 -1.31 16 9 C 0.03 0.40 5.01 -102.23 -0.51 -0.11 16 10 C -0.12 -0.97 10.04 36.00 0.36 -0.61 16 11 C -0.20 -2.64 9.62 -39.35 -0.38 -3.02 16 12 C 0.49 8.08 7.65 32.08 0.25 8.32 16 13 O -0.51 -8.80 12.43 -19.38 -0.24 -9.04 16 14 O -0.34 -6.16 10.07 -44.25 -0.45 -6.61 16 15 C 0.08 1.32 5.76 37.15 0.21 1.53 16 16 C 0.06 1.22 6.32 37.15 0.23 1.45 16 17 O -0.39 -9.84 10.29 -40.08 -0.41 -10.26 16 18 C 0.19 5.46 5.69 36.01 0.20 5.66 16 19 C -0.51 -15.47 9.43 -34.44 -0.32 -15.80 16 20 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 23 Si 0.91 22.12 29.54 -169.99 -5.02 17.10 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 29 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 30 H 0.13 1.00 6.30 -52.49 -0.33 0.66 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 37 H 0.14 1.67 8.06 -52.48 -0.42 1.24 16 38 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 39 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -35.33 379.96 -7.55 -42.88 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.58 Total: -3.38 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.13 Total: -6.30 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.29 Total: -29.56 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.33 -7.55 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815204868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.454 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds