Wall clock time and date at job start Tue Mar 31 2020 12:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35648 * 120.00291 * 2 1 4 4 C 1.41477 * 120.00495 * 180.02562 * 3 2 1 5 5 O 1.21791 * 119.99577 * 353.21603 * 4 3 2 6 6 N 1.34773 * 120.00513 * 173.22102 * 4 3 2 7 7 C 1.47075 * 120.88086 * 173.49553 * 6 4 3 8 8 C 1.53244 * 108.52085 * 129.09086 * 7 6 4 9 9 N 1.46900 * 109.34187 * 53.82676 * 8 7 6 10 10 C 1.46893 * 111.00115 * 172.74879 * 9 8 7 11 11 C 1.50702 * 109.47338 * 294.30146 * 10 9 8 12 12 H 1.07997 * 119.99489 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00111 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00066 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99834 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47370 * 90.00405 * 15 13 11 17 17 H 1.48507 * 109.47183 * 210.00039 * 15 13 11 18 18 H 1.48493 * 109.47247 * 330.00074 * 15 13 11 19 19 C 1.46902 * 111.26854 * 296.89910 * 9 8 7 20 20 C 1.47085 * 120.87780 * 353.77757 * 6 4 3 21 21 C 1.41584 * 119.99773 * 180.02562 * 2 1 3 22 22 C 1.37041 * 125.47499 * 294.99349 * 21 2 1 23 23 C 1.37428 * 113.22332 * 179.97438 * 22 21 2 24 24 C 1.33860 * 115.12943 * 0.02562 * 23 22 21 25 25 S 1.70606 * 111.01269 * 359.76176 * 24 23 22 26 26 H 1.08995 * 109.47591 * 89.99663 * 1 2 3 27 27 H 1.09002 * 109.47270 * 209.99793 * 1 2 3 28 28 H 1.09004 * 109.46990 * 329.99523 * 1 2 3 29 29 H 1.08003 * 119.99906 * 0.02562 * 3 2 1 30 30 H 1.08996 * 109.63054 * 248.79580 * 7 6 4 31 31 H 1.09001 * 109.63018 * 9.38013 * 7 6 4 32 32 H 1.09005 * 109.49311 * 293.87279 * 8 7 6 33 33 H 1.08992 * 109.49688 * 173.78918 * 8 7 6 34 34 H 1.09002 * 109.46966 * 54.30497 * 10 9 8 35 35 H 1.09004 * 109.47142 * 174.30284 * 10 9 8 36 36 H 0.97004 * 120.00063 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.49731 * 303.14143 * 19 9 8 38 38 H 1.08998 * 109.49318 * 183.06046 * 19 9 8 39 39 H 1.08996 * 109.63096 * 350.62304 * 20 6 4 40 40 H 1.09001 * 109.62774 * 111.20289 * 20 6 4 41 41 H 1.08005 * 123.38846 * 359.94721 * 22 21 2 42 42 H 1.08003 * 122.43826 * 180.02562 * 23 22 21 43 43 H 1.07995 * 124.49318 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.1747 0.0000 4 6 3.6000 1.1748 -0.0005 5 8 4.2090 0.1274 0.1236 6 7 4.2739 2.3338 -0.1383 7 6 5.7375 2.3770 0.0000 8 6 6.3207 3.0978 -1.2201 9 7 5.6717 4.4074 -1.3677 10 6 6.3202 5.2008 -2.4202 11 6 7.7286 5.5355 -2.0012 12 1 8.1043 5.1928 -1.0485 13 6 8.5376 6.2784 -2.8345 14 7 8.0802 6.6954 -3.9950 15 14 10.2835 6.6928 -2.3154 16 1 11.2050 5.6257 -2.7816 17 1 10.6841 7.9902 -2.9168 18 1 10.3495 6.7919 -0.8352 19 6 4.2332 4.2629 -1.6283 20 6 3.5645 3.5899 -0.4249 21 6 2.2148 -1.2262 -0.0005 22 6 2.2041 -2.1512 1.0105 23 6 2.9818 -3.2528 0.7455 24 6 3.6085 -3.2349 -0.4372 25 16 3.2440 -1.8097 -1.3012 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6453 2.1101 0.0004 30 1 6.0037 2.9192 0.9073 31 1 6.1310 1.3616 0.0480 32 1 6.1427 2.5009 -2.1147 33 1 7.3929 3.2368 -1.0825 34 1 6.3435 4.6261 -3.3461 35 1 5.7595 6.1220 -2.5784 36 1 8.6493 7.2184 -4.5811 37 1 4.0842 3.6498 -2.5171 38 1 3.7916 5.2468 -1.7865 39 1 2.5213 3.3765 -0.6576 40 1 3.6218 4.2487 0.4417 41 1 1.6414 -2.0267 1.9240 42 1 3.0802 -4.0733 1.4408 43 1 4.2555 -4.0206 -0.7984 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827478676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:39 Heat of formation + Delta-G solvation = 38.655934 kcal Electronic energy + Delta-G solvation = -24504.511811 eV Core-core repulsion = 21063.450725 eV Total energy + Delta-G solvation = -3441.061086 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25437 -38.27119 -37.28172 -35.02025 -34.35888 -32.40383 -30.95104 -29.15562 -28.58992 -27.66890 -25.48277 -24.60165 -23.24763 -22.23366 -21.30897 -20.17529 -19.16598 -18.63543 -17.34485 -16.67439 -16.29065 -15.71262 -15.14000 -14.85215 -14.76795 -14.47167 -14.20261 -13.88093 -13.73373 -13.62223 -13.47575 -12.86263 -12.73047 -12.64271 -12.49688 -12.31456 -12.15050 -12.00762 -11.80008 -11.27375 -11.11804 -10.81877 -10.79506 -10.72853 -10.60790 -10.49722 -9.90730 -9.78798 -9.30145 -9.23868 -8.59348 -8.47207 -8.21078 -7.90834 -7.31287 -6.06231 -4.07926 0.50927 1.31204 1.96649 2.20305 2.76762 3.28646 3.30357 3.36693 3.40899 3.47007 4.39290 4.61652 4.63709 4.79444 5.07342 5.08667 5.16678 5.26679 5.29226 5.32309 5.39907 5.44767 5.50887 5.54073 5.59952 5.70118 5.84249 5.91404 5.95015 6.05195 6.11264 6.17883 6.22285 6.40646 6.45224 6.52180 6.56622 6.82186 7.22464 7.28373 7.65509 7.75509 8.01584 8.12590 8.38774 8.48244 8.99424 9.56676 11.04629 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023043 B = 0.002862 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.841433 B = 9781.449267 C =10391.793936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.033 3.967 3 C -0.211 4.211 4 C 0.536 3.464 5 O -0.537 6.537 6 N -0.605 5.605 7 C 0.117 3.883 8 C 0.052 3.948 9 N -0.536 5.536 10 C 0.194 3.806 11 C -0.509 4.509 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.040 3.960 20 C 0.112 3.888 21 C -0.164 4.164 22 C -0.122 4.122 23 C -0.143 4.143 24 C -0.264 4.264 25 S 0.237 5.763 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.024 0.976 33 H 0.095 0.905 34 H -0.009 1.009 35 H 0.031 0.969 36 H 0.262 0.738 37 H 0.026 0.974 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.635 -15.434 7.692 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.029 3.971 3 C -0.235 4.235 4 C 0.328 3.672 5 O -0.417 6.417 6 N -0.338 5.338 7 C -0.006 4.006 8 C -0.077 4.077 9 N -0.261 5.261 10 C 0.069 3.931 11 C -0.548 4.548 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.089 4.089 20 C -0.011 4.011 21 C -0.282 4.282 22 C -0.152 4.152 23 C -0.175 4.175 24 C -0.402 4.402 25 S 0.509 5.491 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.153 0.847 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.113 0.887 34 H 0.008 0.992 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.715 -15.114 6.580 22.775 hybrid contribution 0.656 -0.490 0.837 1.171 sum -15.059 -15.605 7.417 22.919 Atomic orbital electron populations 1.20991 0.89849 1.03577 1.03190 1.19425 0.95440 0.90471 0.91803 1.22229 0.94656 0.98492 1.08115 1.17102 0.88461 0.83502 0.78181 1.90950 1.70897 1.29679 1.50215 1.48154 1.08203 1.07594 1.69815 1.21800 0.78484 1.01304 0.98989 1.22326 1.00494 0.89590 0.95275 1.62079 1.00224 1.14728 1.49056 1.19718 0.94373 0.91923 0.87057 1.21145 0.96717 1.33200 1.03691 0.91799 1.24990 0.98767 0.95913 0.94906 1.69958 1.36725 1.37285 1.09823 0.86496 0.84366 0.77706 0.78860 1.20718 1.21253 1.19717 1.22390 0.91657 0.99839 0.95046 1.21941 0.95317 0.84950 0.98939 1.22201 1.05601 0.99258 1.01143 1.20466 1.02478 0.93231 0.99074 1.19750 1.00221 0.99951 0.97545 1.25076 1.08850 1.04540 1.01737 1.82908 1.40544 1.08935 1.16704 0.90014 0.90729 0.90548 0.84672 0.91185 0.89405 0.95801 0.88657 0.99159 0.95071 0.92887 0.95568 0.90107 0.90183 0.90759 0.84737 0.85168 0.82614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.02 36.00 0.36 -0.46 16 2 C 0.03 0.35 5.71 -104.27 -0.60 -0.24 16 3 C -0.21 -2.47 8.74 -39.28 -0.34 -2.82 16 4 C 0.54 8.11 7.34 -15.03 -0.11 8.00 16 5 O -0.54 -9.34 11.50 5.11 0.06 -9.29 16 6 N -0.60 -9.30 3.01 -175.91 -0.53 -9.83 16 7 C 0.12 1.96 6.61 -3.60 -0.02 1.93 16 8 C 0.05 1.02 5.46 -3.70 -0.02 1.00 16 9 N -0.54 -11.19 4.62 -235.76 -1.09 -12.27 16 10 C 0.19 4.95 4.72 -4.98 -0.02 4.93 16 11 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16 12 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 15 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 20 C 0.11 1.51 6.41 -3.60 -0.02 1.49 16 21 C -0.16 -2.04 3.73 -38.74 -0.14 -2.18 16 22 C -0.12 -1.43 10.25 -40.31 -0.41 -1.84 16 23 C -0.14 -1.64 10.14 -41.41 -0.42 -2.06 16 24 C -0.26 -3.14 10.92 29.19 0.32 -2.82 16 25 S 0.24 3.07 20.58 -107.50 -2.21 0.85 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.14 1.22 6.07 -52.48 -0.32 0.91 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.49 7.04 -51.93 -0.37 1.12 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 1.99 6.67 -51.93 -0.35 1.64 16 34 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 35 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 39 H 0.08 0.83 5.60 -51.93 -0.29 0.54 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -32.08 359.34 -10.79 -42.87 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.30 Total: -1.19 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.85 Total: -7.28 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.88 Total: -47.80 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.06 Total: -9.29 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.21 Total: 0.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.08 -10.79 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827478676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.524 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds