Wall clock time and date at job start Tue Mar 31 2020 12:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47307 * 2 1 4 4 C 1.53004 * 109.46807 * 119.99834 * 2 1 3 5 5 C 1.53006 * 109.47078 * 174.99939 * 4 2 1 6 6 H 1.08998 * 109.47074 * 55.00168 * 5 4 2 7 7 O 1.45207 * 109.47252 * 295.00100 * 5 4 2 8 8 C 1.34224 * 116.99815 * 150.00030 * 7 5 4 9 9 O 1.20826 * 119.99997 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99984 * 180.02562 * 8 7 5 11 11 C 1.50694 * 109.47566 * 179.97438 * 10 8 7 12 12 C 1.37640 * 120.12755 * 265.00202 * 11 10 8 13 13 C 1.38610 * 120.24574 * 180.29570 * 12 11 10 14 14 C 1.38663 * 120.50297 * 359.43965 * 13 12 11 15 15 C 1.37598 * 120.24567 * 0.55900 * 14 13 12 16 16 C 1.40704 * 120.12589 * 85.01735 * 11 10 8 17 17 C 1.41387 * 120.24480 * 359.96452 * 16 11 10 18 18 H 1.08006 * 119.99793 * 334.08076 * 17 16 11 19 19 C 1.39940 * 120.00234 * 154.08580 * 17 16 11 20 20 N 1.30822 * 119.99912 * 343.61546 * 19 17 16 21 21 Si 1.86803 * 120.00192 * 163.62649 * 19 17 16 22 22 H 1.48496 * 109.47262 * 59.99447 * 21 19 17 23 23 H 1.48504 * 109.47090 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46694 * 299.99081 * 21 19 17 25 25 C 1.50701 * 109.47189 * 175.00324 * 5 4 2 26 26 O 1.20825 * 120.00172 * 120.00100 * 25 5 4 27 27 O 1.34233 * 119.99446 * 300.00157 * 25 5 4 28 28 H 1.08995 * 109.47326 * 300.00566 * 1 2 3 29 29 H 1.09007 * 109.46972 * 60.00195 * 1 2 3 30 30 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47445 * 239.99846 * 2 1 3 32 32 H 1.09000 * 109.47088 * 60.00117 * 3 2 1 33 33 H 1.08997 * 109.47239 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47159 * 299.99493 * 3 2 1 35 35 H 1.08999 * 109.47088 * 55.00202 * 4 2 1 36 36 H 1.08997 * 109.47284 * 294.99602 * 4 2 1 37 37 H 1.09010 * 109.47210 * 59.99596 * 10 8 7 38 38 H 1.08998 * 109.47198 * 300.00296 * 10 8 7 39 39 H 1.07992 * 119.87745 * 0.02562 * 12 11 10 40 40 H 1.08008 * 119.75251 * 179.70362 * 13 12 11 41 41 H 1.07998 * 119.87634 * 180.30363 * 14 13 12 42 42 H 1.08001 * 120.12403 * 179.74226 * 15 14 13 43 43 H 0.97001 * 120.00439 * 179.97438 * 20 19 17 44 44 H 0.96701 * 116.99305 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1881 6 1 3.9954 0.1611 1.0529 7 8 3.9446 -1.6797 0.0727 8 6 5.1231 -1.4217 -0.5155 9 8 5.8144 -0.5166 -0.1121 10 6 5.5837 -2.2603 -1.6798 11 6 6.9268 -1.7678 -2.1536 12 6 7.0057 -0.8699 -3.1938 13 6 8.2401 -0.4199 -3.6355 14 6 9.4074 -0.8586 -3.0291 15 6 9.3523 -1.7561 -1.9876 16 6 8.1050 -2.2243 -1.5345 17 6 8.0361 -3.1463 -0.4648 18 1 7.1509 -3.1924 0.1523 19 6 9.1150 -3.9990 -0.2055 20 7 10.0387 -4.1801 -1.1140 21 14 9.2361 -4.8790 1.4379 22 1 8.0428 -5.7426 1.6261 23 1 10.4618 -5.7170 1.4615 24 1 9.2997 -3.8771 2.5322 25 6 4.0772 -1.4304 2.4724 26 8 4.6987 -2.4663 2.4499 27 8 3.8431 -0.8132 3.6412 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6053 -1.7198 1.2952 36 1 1.7516 -0.1583 2.1370 37 1 4.8612 -2.1822 -2.4923 38 1 5.6676 -3.3012 -1.3672 39 1 6.1028 -0.5180 -3.6704 40 1 8.2929 0.2810 -4.4556 41 1 10.3635 -0.4976 -3.3783 42 1 10.2630 -2.0996 -1.5195 43 1 10.7867 -4.7709 -0.9342 44 1 4.1920 -1.2355 4.4381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833479591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:33 Heat of formation + Delta-G solvation = -197.349411 kcal Electronic energy + Delta-G solvation = -27652.320030 eV Core-core repulsion = 23725.979362 eV Total energy + Delta-G solvation = -3926.340668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.18816 -40.94226 -39.48271 -38.14985 -37.35836 -36.63208 -35.56402 -33.66460 -31.79038 -31.39047 -28.81863 -28.02170 -26.99878 -26.11228 -23.71327 -22.86393 -22.08860 -21.15577 -20.93586 -19.43020 -19.13121 -18.80075 -18.35543 -17.39072 -17.26214 -16.78281 -16.41500 -16.27856 -15.93600 -15.47213 -15.36499 -15.02515 -14.63549 -14.42166 -14.25610 -13.77732 -13.54863 -13.47139 -13.42095 -13.03763 -12.98767 -12.92927 -12.81058 -12.75363 -12.61263 -12.55966 -12.53834 -12.16365 -12.04089 -11.65237 -11.60496 -11.46413 -11.37557 -11.28399 -11.24032 -11.09044 -9.27252 -9.25143 -8.66872 -6.36723 0.83718 0.93181 1.04236 1.17949 1.28727 1.39259 1.47755 1.55138 2.05112 2.15014 2.72158 3.47673 3.59257 3.71443 3.88111 3.96762 4.06611 4.18880 4.31252 4.32232 4.36256 4.55063 4.67676 4.71669 4.73548 4.77518 4.83977 4.91104 4.97539 5.03710 5.10142 5.14283 5.24324 5.32639 5.34496 5.39977 5.46317 5.48978 5.51068 5.71886 5.98574 6.10923 6.18124 6.36422 6.66720 6.71799 6.82972 6.92670 7.04256 8.29287 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012284 B = 0.004692 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.872046 B = 5965.981925 C = 7661.238093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C -0.155 4.155 4 C -0.095 4.095 5 C 0.089 3.911 6 H 0.121 0.879 7 O -0.331 6.331 8 C 0.469 3.531 9 O -0.525 6.525 10 C -0.041 4.041 11 C -0.203 4.203 12 C -0.081 4.081 13 C -0.238 4.238 14 C -0.111 4.111 15 C -0.191 4.191 16 C 0.099 3.901 17 C -0.487 4.487 18 H 0.061 0.939 19 C 0.044 3.956 20 N -0.818 5.818 21 Si 0.962 3.038 22 H -0.263 1.263 23 H -0.256 1.256 24 H -0.274 1.274 25 C 0.464 3.536 26 O -0.540 6.540 27 O -0.496 6.496 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.288 0.712 44 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 6.496 4.773 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.212 4.212 4 C -0.132 4.132 5 C 0.032 3.968 6 H 0.138 0.862 7 O -0.248 6.248 8 C 0.313 3.687 9 O -0.413 6.413 10 C -0.078 4.078 11 C -0.205 4.205 12 C -0.099 4.099 13 C -0.257 4.257 14 C -0.129 4.129 15 C -0.211 4.211 16 C 0.097 3.903 17 C -0.516 4.516 18 H 0.079 0.921 19 C -0.172 4.172 20 N -0.444 5.444 21 Si 0.784 3.216 22 H -0.187 1.187 23 H -0.180 1.180 24 H -0.199 1.199 25 C 0.306 3.694 26 O -0.430 6.430 27 O -0.310 6.310 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.118 0.882 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -17.208 6.535 4.515 18.953 hybrid contribution 1.209 -0.812 1.423 2.036 sum -15.999 5.723 5.937 17.999 Atomic orbital electron populations 1.21771 0.92656 1.02461 1.02829 1.21121 0.97588 0.95990 0.96942 1.21963 0.99951 0.96030 1.03248 1.21883 0.85925 1.03720 1.01715 1.22518 0.99966 0.94652 0.79622 0.86162 1.86694 1.37705 1.57479 1.42953 1.24545 0.77865 0.82715 0.83545 1.90618 1.54586 1.32128 1.63957 1.20020 0.95573 0.98858 0.93346 1.19436 0.92742 1.06838 1.01441 1.20762 0.97499 0.95671 0.95961 1.20758 0.92367 1.07464 1.05155 1.21000 0.97972 0.97413 0.96537 1.21294 0.97863 1.00921 1.01013 1.17695 0.91600 0.90131 0.90877 1.19575 1.01815 1.17150 1.13085 0.92075 1.26503 0.94036 0.96380 1.00258 1.69840 1.10314 1.30355 1.33894 0.85560 0.79164 0.78469 0.78416 1.18700 1.18014 1.19919 1.24040 0.75964 0.82209 0.87162 1.90801 1.38816 1.25481 1.87903 1.84422 1.74078 1.55150 1.17351 0.91350 0.91850 0.92162 0.91583 0.90822 0.94694 0.91571 0.89443 0.86273 0.85057 0.88179 0.85779 0.86108 0.87305 0.88454 0.90092 0.70676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 71.98 0.66 -1.03 16 2 C -0.10 -1.65 2.87 -10.79 -0.03 -1.68 16 3 C -0.15 -2.63 8.95 71.98 0.64 -1.98 16 4 C -0.10 -1.76 4.36 30.60 0.13 -1.62 16 5 C 0.09 2.52 2.33 29.85 0.07 2.58 16 6 H 0.12 3.52 5.36 -2.39 -0.01 3.51 16 7 O -0.33 -11.42 8.89 -44.99 -0.40 -11.82 16 8 C 0.47 19.36 7.51 71.24 0.54 19.89 16 9 O -0.53 -25.07 15.25 21.96 0.34 -24.74 16 10 C -0.04 -1.67 5.29 29.10 0.15 -1.51 16 11 C -0.20 -9.83 4.43 -19.41 -0.09 -9.91 16 12 C -0.08 -3.53 9.66 22.22 0.21 -3.31 16 13 C -0.24 -10.46 10.05 22.46 0.23 -10.24 16 14 C -0.11 -5.35 10.02 22.22 0.22 -5.13 16 15 C -0.19 -10.58 8.68 22.73 0.20 -10.38 16 16 C 0.10 5.53 5.56 -21.29 -0.12 5.42 16 17 C -0.49 -27.71 8.14 23.46 0.19 -27.52 16 18 H 0.06 3.55 6.68 -2.91 -0.02 3.53 16 19 C 0.04 2.34 5.16 85.26 0.44 2.78 16 20 N -0.82 -44.30 10.97 21.82 0.24 -44.06 16 21 Si 0.96 42.17 29.59 68.60 2.03 44.20 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 25 C 0.46 14.32 7.67 71.24 0.55 14.87 16 26 O -0.54 -22.02 17.22 28.33 0.49 -21.54 16 27 O -0.50 -10.45 13.23 -51.44 -0.68 -11.14 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 1.33 7.69 -2.39 -0.02 1.31 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.03 0.75 6.46 -2.39 -0.02 0.73 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.12 1.64 7.99 -2.39 -0.02 1.62 16 37 H 0.13 4.13 8.05 -2.38 -0.02 4.11 16 38 H 0.10 4.29 7.06 -2.39 -0.02 4.27 16 39 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 41 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.10 5.64 6.22 -2.91 -0.02 5.62 16 43 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 44 H 0.43 5.59 9.10 -74.06 -0.67 4.91 16 Total: -1.00 -74.08 372.31 6.36 -67.72 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.35 Total: 30.16 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 4.00 Total: -28.78 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.24 Total: -44.06 kcal Atomic # 8 Polarization: -68.97 SS G_CDS: -0.26 Total: -69.23 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -74.08 6.36 -67.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833479591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.632 kcal (2) G-P(sol) polarization free energy of solvation -74.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds