Wall clock time and date at job start Tue Mar 31 2020 12:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 H 1.07999 * 119.99515 * 120.00667 * 4 2 1 6 6 C 1.37870 * 120.00176 * 300.00134 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47293 * 89.99746 * 8 6 4 10 10 H 1.48504 * 109.47104 * 209.99992 * 8 6 4 11 11 H 1.48495 * 109.47249 * 329.99739 * 8 6 4 12 12 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 13 13 O 1.45196 * 109.47152 * 59.99967 * 12 2 1 14 14 C 1.34232 * 117.00388 * 179.97438 * 13 12 2 15 15 O 1.20826 * 119.99712 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00527 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47541 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.69838 * 304.41528 * 17 16 14 19 19 C 1.53471 * 109.71015 * 183.78888 * 17 16 14 20 20 O 1.43158 * 108.25063 * 180.59454 * 19 17 16 21 21 C 1.36108 * 116.71509 * 46.19036 * 20 19 17 22 22 C 1.38708 * 119.39581 * 162.99673 * 21 20 19 23 23 C 1.38190 * 120.06483 * 179.67501 * 22 21 20 24 24 C 1.38252 * 120.11634 * 359.97438 * 23 22 21 25 25 C 1.38198 * 120.11180 * 0.03766 * 24 23 22 26 26 C 1.38699 * 120.06516 * 0.02562 * 25 24 23 27 27 O 1.36109 * 119.39801 * 179.86266 * 26 25 24 28 28 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 34 34 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 36 36 H 1.09004 * 109.47261 * 299.99863 * 12 2 1 37 37 H 1.09007 * 109.47169 * 300.00620 * 16 14 13 38 38 H 1.09004 * 109.47183 * 59.99698 * 16 14 13 39 39 H 1.08999 * 109.70754 * 300.26106 * 19 17 16 40 40 H 1.08993 * 109.71022 * 60.88922 * 19 17 16 41 41 H 1.07998 * 119.96448 * 359.65254 * 22 21 20 42 42 H 1.08002 * 119.94390 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.94755 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.96557 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5653 3.7123 12 6 2.0400 -0.7213 -1.2492 13 8 1.5560 -0.0368 -2.4347 14 6 1.9171 -0.5466 -3.6229 15 8 2.6141 -1.5323 -3.6706 16 6 1.4522 0.1099 -4.8972 17 6 1.9994 -0.6637 -6.0985 18 1 3.0850 -0.7321 -6.0279 19 6 1.6084 0.0537 -7.3977 20 8 2.1227 -0.7021 -8.4993 21 6 1.9229 -2.0480 -8.4645 22 6 2.0668 -2.7880 -9.6288 23 6 1.8738 -4.1562 -9.6077 24 6 1.5374 -4.7913 -8.4267 25 6 1.3922 -4.0598 -7.2632 26 6 1.5833 -2.6861 -7.2776 27 8 1.4341 -1.9787 -6.1244 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7087 1.1612 3.4844 35 1 3.1300 -0.7208 -1.2494 36 1 1.6767 -1.7490 -1.2492 37 1 0.3627 0.1084 -4.9301 38 1 1.8152 1.1372 -4.9301 39 1 0.5226 0.1164 -7.4704 40 1 2.0366 1.0559 -7.4074 41 1 2.3296 -2.2944 -10.5527 42 1 1.9859 -4.7305 -10.5155 43 1 1.3876 -5.8607 -8.4133 44 1 1.1298 -4.5584 -6.3417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835304093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:45 Heat of formation + Delta-G solvation = -140.457956 kcal Electronic energy + Delta-G solvation = -26784.228822 eV Core-core repulsion = 22860.355153 eV Total energy + Delta-G solvation = -3923.873669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.52955 -39.94736 -37.98575 -37.46534 -36.56237 -34.85067 -33.24601 -31.28363 -30.86238 -29.51646 -27.76820 -25.69940 -25.64076 -25.11867 -24.03458 -22.92553 -21.17092 -20.47203 -19.01273 -18.85111 -17.85110 -17.19473 -17.03904 -16.00361 -15.89931 -15.76383 -15.40925 -15.16628 -14.85448 -14.62716 -14.48814 -14.13516 -13.99299 -13.39379 -13.12344 -13.10194 -12.69867 -12.26764 -12.11278 -12.02209 -11.83234 -11.46219 -11.42663 -11.22766 -11.14724 -10.97608 -10.72346 -10.64560 -10.43404 -10.24709 -10.07688 -9.91246 -9.42928 -9.32809 -8.84762 -8.77696 -8.39256 -8.25569 -6.03662 -4.15221 1.09289 1.11831 2.56171 2.77523 2.92370 3.09010 3.26810 3.33737 3.38021 3.53072 3.99143 4.30300 4.36420 4.42261 4.53870 4.76795 4.84577 4.96710 5.06674 5.11214 5.18806 5.22846 5.26579 5.36242 5.44463 5.66558 5.93873 5.99654 6.07356 6.09465 6.26063 6.42445 6.45151 6.70781 6.73870 6.96290 7.04997 7.11141 7.13568 7.24499 7.38573 7.60155 7.68510 8.03231 8.12608 8.22705 8.37726 8.84729 9.50409 10.97570 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.002458 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.900020 B =11389.554089 C =12061.054328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.070 3.930 3 C -0.130 4.130 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.086 3.914 13 O -0.349 6.349 14 C 0.454 3.546 15 O -0.507 6.507 16 C -0.109 4.109 17 C 0.064 3.936 18 H 0.095 0.905 19 C 0.027 3.973 20 O -0.306 6.306 21 C 0.043 3.957 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.113 4.113 26 C 0.061 3.939 27 O -0.290 6.290 28 H 0.084 0.916 29 H 0.016 0.984 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.016 0.984 33 H 0.084 0.916 34 H 0.261 0.739 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 -2.551 -23.071 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.187 4.187 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.013 3.987 13 O -0.265 6.265 14 C 0.296 3.704 15 O -0.396 6.396 16 C -0.147 4.147 17 C 0.007 3.993 18 H 0.113 0.887 19 C -0.048 4.048 20 O -0.220 6.220 21 C -0.001 4.001 22 C -0.133 4.133 23 C -0.140 4.140 24 C -0.134 4.134 25 C -0.132 4.132 26 C 0.015 3.985 27 O -0.204 6.204 28 H 0.103 0.897 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.099 0.901 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.374 -2.667 -22.836 22.994 hybrid contribution 0.440 -0.449 1.050 1.224 sum 0.066 -3.116 -21.785 22.007 Atomic orbital electron populations 1.21772 0.97317 0.98988 1.00661 1.18249 0.93438 0.93058 0.88311 1.21772 0.98068 0.98210 1.00671 1.20939 1.31943 1.12309 0.89818 0.92520 1.24857 0.94777 0.94938 0.98797 1.69832 1.36287 1.22636 1.23310 0.86536 0.78585 0.80091 0.82455 1.20634 1.21131 1.19898 1.23675 0.98122 0.95833 0.81062 1.86502 1.69235 1.55890 1.14885 1.23097 0.78153 0.82821 0.86343 1.90669 1.35538 1.25204 1.88164 1.21318 1.04732 1.00303 0.88328 1.22908 0.99577 0.82159 0.94607 0.88702 1.23669 1.00592 0.95793 0.84769 1.86297 1.75815 1.15484 1.44428 1.18949 1.04260 0.83344 0.93584 1.20413 1.03291 0.93730 0.95915 1.20891 1.01171 0.93450 0.98506 1.20932 1.00557 1.00019 0.91860 1.20537 1.02712 0.90120 0.99835 1.19000 1.02716 0.92237 0.84509 1.86430 1.74075 1.27538 1.32405 0.89719 0.96463 0.95818 0.95842 0.96469 0.89721 0.92896 0.92576 0.92520 0.86495 0.85385 0.90080 0.85602 0.84964 0.85197 0.85120 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.11 37.16 0.30 -2.81 16 2 C 0.07 1.70 0.58 -155.66 -0.09 1.61 16 3 C -0.13 -3.08 8.11 37.16 0.30 -2.78 16 4 C -0.51 -13.69 8.01 -34.44 -0.28 -13.96 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -23.88 9.35 55.43 0.52 -23.36 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.09 1.90 4.26 37.16 0.16 2.06 16 13 O -0.35 -6.78 8.88 -39.26 -0.35 -7.13 16 14 C 0.45 7.70 7.84 36.00 0.28 7.98 16 15 O -0.51 -10.15 15.19 -24.01 -0.36 -10.51 16 16 C -0.11 -1.20 5.55 -27.89 -0.15 -1.36 16 17 C 0.06 0.74 2.56 -26.49 -0.07 0.68 16 18 H 0.10 1.19 7.98 -51.93 -0.41 0.78 16 19 C 0.03 0.24 6.56 37.40 0.25 0.49 16 20 O -0.31 -3.48 10.42 -32.87 -0.34 -3.82 16 21 C 0.04 0.53 6.49 -39.14 -0.25 0.27 16 22 C -0.11 -1.15 9.96 -39.43 -0.39 -1.54 16 23 C -0.12 -1.06 10.04 -39.59 -0.40 -1.46 16 24 C -0.12 -1.08 10.04 -39.59 -0.40 -1.48 16 25 C -0.11 -1.34 9.96 -39.43 -0.39 -1.74 16 26 C 0.06 0.81 6.49 -39.14 -0.25 0.56 16 27 O -0.29 -4.20 9.32 -44.41 -0.41 -4.62 16 28 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 29 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 33 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 36 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 37 H 0.12 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 44 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -31.54 362.61 -8.44 -39.98 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.46 Total: -0.05 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.48 Total: -11.77 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.52 Total: -23.36 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.47 Total: -26.08 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.54 -8.44 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.476 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds