Wall clock time and date at job start Tue Mar 31 2020 12:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 H 1.07999 * 119.99515 * 120.00667 * 4 2 1 6 6 C 1.37870 * 120.00176 * 300.00134 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47293 * 89.99746 * 8 6 4 10 10 H 1.48504 * 109.47104 * 209.99992 * 8 6 4 11 11 H 1.48495 * 109.47249 * 329.99739 * 8 6 4 12 12 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 13 13 O 1.45196 * 109.47152 * 59.99967 * 12 2 1 14 14 C 1.34232 * 117.00388 * 179.97438 * 13 12 2 15 15 O 1.20826 * 119.99712 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00527 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47541 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.69838 * 304.41528 * 17 16 14 19 19 C 1.53471 * 109.71015 * 183.78888 * 17 16 14 20 20 O 1.43158 * 108.25063 * 180.59454 * 19 17 16 21 21 C 1.36108 * 116.71509 * 46.19036 * 20 19 17 22 22 C 1.38708 * 119.39581 * 162.99673 * 21 20 19 23 23 C 1.38190 * 120.06483 * 179.67501 * 22 21 20 24 24 C 1.38252 * 120.11634 * 359.97438 * 23 22 21 25 25 C 1.38198 * 120.11180 * 0.03766 * 24 23 22 26 26 C 1.38699 * 120.06516 * 0.02562 * 25 24 23 27 27 O 1.36109 * 119.39801 * 179.86266 * 26 25 24 28 28 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 34 34 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 36 36 H 1.09004 * 109.47261 * 299.99863 * 12 2 1 37 37 H 1.09007 * 109.47169 * 300.00620 * 16 14 13 38 38 H 1.09004 * 109.47183 * 59.99698 * 16 14 13 39 39 H 1.08999 * 109.70754 * 300.26106 * 19 17 16 40 40 H 1.08993 * 109.71022 * 60.88922 * 19 17 16 41 41 H 1.07998 * 119.96448 * 359.65254 * 22 21 20 42 42 H 1.08002 * 119.94390 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.94755 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.96557 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5653 3.7123 12 6 2.0400 -0.7213 -1.2492 13 8 1.5560 -0.0368 -2.4347 14 6 1.9171 -0.5466 -3.6229 15 8 2.6141 -1.5323 -3.6706 16 6 1.4522 0.1099 -4.8972 17 6 1.9994 -0.6637 -6.0985 18 1 3.0850 -0.7321 -6.0279 19 6 1.6084 0.0537 -7.3977 20 8 2.1227 -0.7021 -8.4993 21 6 1.9229 -2.0480 -8.4645 22 6 2.0668 -2.7880 -9.6288 23 6 1.8738 -4.1562 -9.6077 24 6 1.5374 -4.7913 -8.4267 25 6 1.3922 -4.0598 -7.2632 26 6 1.5833 -2.6861 -7.2776 27 8 1.4341 -1.9787 -6.1244 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7087 1.1612 3.4844 35 1 3.1300 -0.7208 -1.2494 36 1 1.6767 -1.7490 -1.2492 37 1 0.3627 0.1084 -4.9301 38 1 1.8152 1.1372 -4.9301 39 1 0.5226 0.1164 -7.4704 40 1 2.0366 1.0559 -7.4074 41 1 2.3296 -2.2944 -10.5527 42 1 1.9859 -4.7305 -10.5155 43 1 1.3876 -5.8607 -8.4133 44 1 1.1298 -4.5584 -6.3417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835304093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:44 Heat of formation + Delta-G solvation = -156.901906 kcal Electronic energy + Delta-G solvation = -26784.941885 eV Core-core repulsion = 22860.355153 eV Total energy + Delta-G solvation = -3924.586732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.38222 -41.36539 -38.87496 -38.39319 -38.09103 -36.60676 -34.17853 -33.25688 -31.63730 -30.37649 -28.73680 -27.57792 -27.45342 -26.93362 -25.01308 -23.74180 -22.30247 -21.46922 -20.72905 -19.90219 -18.82446 -18.42849 -17.98235 -17.72997 -17.40886 -17.18373 -16.59683 -16.23681 -15.93623 -15.66416 -15.49551 -15.00040 -14.97985 -14.82334 -14.69650 -14.52971 -13.93322 -13.57660 -13.43946 -13.12246 -13.10313 -12.84320 -12.81243 -12.75456 -12.64075 -12.33521 -12.16482 -12.15248 -11.99008 -11.73102 -11.67277 -11.44513 -11.28894 -11.15386 -10.75001 -10.41684 -9.64675 -9.08090 -8.06388 -6.24411 0.29728 0.32434 1.22974 1.41507 1.43233 1.51837 1.71936 2.00679 2.21591 2.43716 2.74259 3.16893 3.16963 3.40775 3.57854 3.74875 3.94740 4.12380 4.21464 4.23191 4.26461 4.28308 4.36962 4.40664 4.47144 4.58928 4.60708 4.64690 4.84716 4.89483 5.03980 5.18797 5.19180 5.22298 5.22362 5.36164 5.51037 5.59259 5.63187 5.66808 5.72086 5.92547 6.07530 6.16881 6.36026 6.40991 6.75135 6.82668 7.43563 8.93153 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.002458 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.900020 B =11389.554089 C =12061.054328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.061 3.939 3 C -0.119 4.119 4 C -0.536 4.536 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.099 3.901 13 O -0.352 6.352 14 C 0.448 3.552 15 O -0.544 6.544 16 C -0.096 4.096 17 C 0.059 3.941 18 H 0.076 0.924 19 C 0.031 3.969 20 O -0.316 6.316 21 C 0.028 3.972 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.113 4.113 25 C -0.137 4.137 26 C 0.029 3.971 27 O -0.321 6.321 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.017 0.983 31 H 0.019 0.981 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.263 0.737 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.139 0.861 38 H 0.173 0.827 39 H 0.094 0.906 40 H 0.163 0.837 41 H 0.153 0.847 42 H 0.165 0.835 43 H 0.157 0.843 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 -2.075 -25.187 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 C -0.176 4.176 4 C -0.574 4.574 5 H 0.064 0.936 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.026 3.974 13 O -0.268 6.268 14 C 0.293 3.707 15 O -0.434 6.434 16 C -0.133 4.133 17 C 0.002 3.998 18 H 0.094 0.906 19 C -0.044 4.044 20 O -0.230 6.230 21 C -0.017 4.017 22 C -0.139 4.139 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.156 4.156 26 C -0.015 4.015 27 O -0.236 6.236 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.157 0.843 38 H 0.190 0.810 39 H 0.112 0.888 40 H 0.181 0.819 41 H 0.170 0.830 42 H 0.183 0.817 43 H 0.175 0.825 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.568 -2.181 -24.969 25.071 hybrid contribution 0.506 -0.646 1.621 1.817 sum -0.062 -2.827 -23.348 23.519 Atomic orbital electron populations 1.21629 0.97078 0.98500 1.00492 1.18269 0.93642 0.93414 0.88626 1.21619 0.97747 0.97722 1.00545 1.21202 1.32356 1.12466 0.91338 0.93566 1.25494 0.94957 0.95598 1.01103 1.69935 1.36580 1.23247 1.23874 0.85663 0.78219 0.78915 0.79453 1.20188 1.20538 1.20023 1.23194 0.97360 0.94970 0.81923 1.86491 1.69440 1.55741 1.15087 1.24313 0.77075 0.82420 0.86911 1.90660 1.37274 1.27007 1.88443 1.21530 1.05936 1.01564 0.84257 1.23031 0.98550 0.81820 0.96355 0.90617 1.23900 1.01672 0.96444 0.82339 1.86269 1.76215 1.15270 1.45288 1.19204 1.04726 0.83908 0.93818 1.20812 1.02623 0.94403 0.96023 1.21334 0.99167 0.93224 0.99421 1.21284 0.99397 1.01240 0.91218 1.20748 1.03908 0.90220 1.00702 1.19310 1.04540 0.92867 0.84823 1.86374 1.74668 1.29014 1.33547 0.91734 0.94576 0.96423 0.96150 0.94426 0.91818 0.92776 0.93438 0.93917 0.84328 0.81005 0.88795 0.81921 0.82975 0.81701 0.82524 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.11 71.98 0.58 -5.14 16 2 C 0.06 2.99 0.58 -52.93 -0.03 2.96 16 3 C -0.12 -5.61 8.11 71.98 0.58 -5.03 16 4 C -0.54 -29.07 8.01 25.60 0.21 -28.87 16 5 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 6 C 0.03 1.53 5.15 84.65 0.44 1.97 16 7 N -0.90 -48.82 9.35 21.45 0.20 -48.62 16 8 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.10 4.45 4.26 71.98 0.31 4.76 16 13 O -0.35 -13.41 8.88 -51.44 -0.46 -13.87 16 14 C 0.45 15.00 7.84 71.23 0.56 15.56 16 15 O -0.54 -22.33 15.19 26.99 0.41 -21.92 16 16 C -0.10 -1.91 5.55 29.85 0.17 -1.74 16 17 C 0.06 1.31 2.56 30.75 0.08 1.39 16 18 H 0.08 1.93 7.98 -2.39 -0.02 1.91 16 19 C 0.03 0.47 6.56 72.14 0.47 0.95 16 20 O -0.32 -6.71 10.42 -82.55 -0.86 -7.57 16 21 C 0.03 0.66 6.49 22.56 0.15 0.81 16 22 C -0.12 -2.18 9.96 22.37 0.22 -1.96 16 23 C -0.11 -1.69 10.04 22.26 0.22 -1.47 16 24 C -0.11 -1.97 10.04 22.26 0.22 -1.75 16 25 C -0.14 -3.33 9.96 22.37 0.22 -3.11 16 26 C 0.03 0.80 6.49 22.56 0.15 0.95 16 27 O -0.32 -9.49 9.32 -71.53 -0.67 -10.16 16 28 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 29 H 0.04 1.54 7.68 -2.39 -0.02 1.52 16 30 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 1.57 7.68 -2.39 -0.02 1.55 16 33 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 34 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 35 H 0.05 2.18 8.13 -2.39 -0.02 2.16 16 36 H 0.04 2.00 8.13 -2.38 -0.02 1.98 16 37 H 0.14 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.17 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.16 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 44 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -70.55 362.61 6.19 -64.36 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.99 Total: 12.59 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 4.55 Total: -19.72 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.20 Total: -48.62 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -1.57 Total: -53.51 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -70.55 6.19 -64.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.544 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds