Wall clock time and date at job start Tue Mar 31 2020 13:00:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 109.46486 * 2 1
4 4 H 1.08999 * 109.47466 * 55.00024 * 3 2 1
5 5 O 1.45200 * 109.47460 * 294.99671 * 3 2 1
6 6 C 1.34709 * 116.99749 * 89.99970 * 5 3 2
7 7 O 1.21464 * 120.00010 * 0.02562 * 6 5 3
8 8 C 1.47769 * 119.99825 * 179.97438 * 6 5 3
9 9 C 1.39965 * 120.03067 * 359.72882 * 8 6 5
10 10 C 1.38319 * 120.35071 * 179.75951 * 9 8 6
11 11 C 1.37755 * 120.41546 * 0.51533 * 10 9 8
12 12 C 1.40753 * 120.05661 * 359.74202 * 11 10 9
13 13 C 1.41441 * 120.17995 * 180.02562 * 12 11 10
14 14 H 1.08004 * 120.00012 * 150.17884 * 13 12 11
15 15 C 1.39930 * 119.99899 * 330.18518 * 13 12 11
16 16 N 1.30829 * 119.99998 * 161.73031 * 15 13 12
17 17 Si 1.86803 * 120.00255 * 341.72227 * 15 13 12
18 18 H 1.48495 * 109.46923 * 95.41404 * 17 15 13
19 19 H 1.48501 * 109.47340 * 215.41919 * 17 15 13
20 20 H 1.48497 * 109.46819 * 335.41905 * 17 15 13
21 21 C 1.39047 * 120.02726 * 180.02562 * 8 6 5
22 22 C 1.52997 * 109.46653 * 175.00165 * 3 2 1
23 23 H 1.09000 * 109.47881 * 60.00245 * 22 3 2
24 24 C 1.53004 * 109.47006 * 179.97438 * 22 3 2
25 25 C 1.50700 * 109.47295 * 299.99515 * 22 3 2
26 26 O 1.20832 * 119.99975 * 0.02562 * 25 22 3
27 27 O 1.34227 * 120.00235 * 179.97438 * 25 22 3
28 28 C 1.45207 * 117.00234 * 180.02562 * 27 25 22
29 29 H 1.09001 * 109.47118 * 179.97438 * 1 2 3
30 30 H 1.08995 * 109.47597 * 299.99637 * 1 2 3
31 31 H 1.09000 * 109.47595 * 60.00361 * 1 2 3
32 32 H 1.08998 * 109.46920 * 240.00664 * 2 1 3
33 33 H 1.08989 * 109.47168 * 119.99798 * 2 1 3
34 34 H 1.07992 * 119.82437 * 0.02562 * 9 8 6
35 35 H 1.07995 * 119.78882 * 180.26004 * 10 9 8
36 36 H 1.08004 * 119.97319 * 179.76385 * 11 10 9
37 37 H 0.97007 * 119.99753 * 179.97438 * 16 15 13
38 38 H 1.08002 * 120.20452 * 359.95863 * 21 8 6
39 39 H 1.09006 * 109.46920 * 179.97438 * 24 22 3
40 40 H 1.09000 * 109.47185 * 299.99937 * 24 22 3
41 41 H 1.09006 * 109.47092 * 60.00190 * 24 22 3
42 42 H 1.08999 * 109.46836 * 180.02562 * 28 27 25
43 43 H 1.09005 * 109.46661 * 300.00220 * 28 27 25
44 44 H 1.08994 * 109.46853 * 60.00316 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6052 1.9816 0.8418
5 8 1.6558 2.0918 -1.2407
6 6 0.4683 2.7277 -1.2560
7 8 -0.2270 2.7399 -0.2601
8 6 0.0121 3.4113 -2.4841
9 6 0.8158 3.4033 -3.6300
10 6 0.3931 4.0368 -4.7846
11 6 -0.8184 4.6917 -4.8172
12 6 -1.6381 4.7152 -3.6732
13 6 -2.8827 5.3864 -3.7039
14 1 -3.6970 5.0427 -3.0832
15 6 -3.0590 6.4955 -4.5386
16 7 -4.2654 6.8971 -4.8468
17 14 -1.5719 7.4031 -5.2127
18 1 -1.2518 6.8900 -6.5688
19 1 -1.8718 8.8554 -5.2909
20 1 -0.4100 7.1853 -4.3140
21 6 -1.2132 4.0683 -2.5004
22 6 3.5647 1.4444 0.1257
23 1 3.9994 0.9055 -0.7161
24 6 4.0747 2.8870 0.1250
25 6 3.9634 0.7708 1.4134
26 8 3.1150 0.3336 2.1544
27 8 5.2611 0.6555 1.7368
28 6 5.5716 -0.0053 2.9919
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5137 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 1.8933 -0.5137 -0.8900
33 1 1.8933 -0.5137 0.8899
34 1 1.7691 2.8961 -3.6138
35 1 1.0186 4.0214 -5.6648
36 1 -1.1397 5.1872 -5.7214
37 1 -4.3876 7.6662 -5.4252
38 1 -1.8349 4.0806 -1.6174
39 1 5.1610 2.8883 0.2151
40 1 3.7863 3.3739 -0.8065
41 1 3.6400 3.4264 0.9667
42 1 6.6523 -0.0309 3.1313
43 1 5.1123 0.5431 3.8145
44 1 5.1831 -1.0235 2.9722
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000836112968.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:34
Heat of formation + Delta-G solvation = -164.061893 kcal
Electronic energy + Delta-G solvation = -27010.377831 eV
Core-core repulsion = 23085.480618 eV
Total energy + Delta-G solvation = -3924.897213 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.13314 -40.11861 -37.91419 -37.10693 -36.25894 -34.29996 -33.70484 -32.53612
-30.76765 -30.12731 -28.15452 -26.84374 -25.35845 -24.29580 -23.33584 -21.57831
-20.80447 -20.53743 -20.24369 -18.32634 -17.73601 -17.05350 -16.67156 -16.51063
-16.21196 -15.98394 -15.30605 -14.71569 -14.35926 -14.32214 -14.01121 -13.74544
-13.52812 -13.36656 -12.91834 -12.80322 -12.71503 -12.60842 -12.26942 -12.21768
-12.10212 -11.81029 -11.74869 -11.56365 -11.19771 -11.11149 -10.95985 -10.84532
-10.78123 -10.62693 -10.42699 -10.10927 -10.04643 -9.86258 -9.69217 -9.27675
-7.99644 -7.82545 -7.04161 -4.59726 1.66934 1.86591 2.15465 2.46884
3.02266 3.13793 3.19303 3.20539 3.34979 3.89271 4.18457 4.40071
4.48031 4.60735 4.75822 4.83852 4.91259 5.07226 5.16313 5.18847
5.23618 5.25864 5.48280 5.53841 5.66403 5.73877 5.84857 5.87848
5.92735 6.01668 6.11182 6.12970 6.23073 6.34100 6.48700 6.58614
6.61672 6.75869 6.91761 7.14404 7.35939 7.41046 7.44796 7.68190
7.84711 8.23054 8.30322 8.46208 8.66144 9.97959
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.026184 B = 0.002831 C = 0.002705
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1069.114964 B = 9886.484236 C =10348.403040
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.150 4.150
3 C 0.103 3.897
4 H 0.093 0.907
5 O -0.345 6.345
6 C 0.513 3.487
7 O -0.510 6.510
8 C -0.095 4.095
9 C -0.192 4.192
10 C -0.089 4.089
11 C -0.213 4.213
12 C 0.079 3.921
13 C -0.443 4.443
14 H 0.094 0.906
15 C 0.083 3.917
16 N -0.802 5.802
17 Si 0.909 3.091
18 H -0.269 1.269
19 H -0.288 1.288
20 H -0.243 1.243
21 C -0.133 4.133
22 C -0.081 4.081
23 H 0.121 0.879
24 C -0.147 4.147
25 C 0.471 3.529
26 O -0.497 6.497
27 O -0.355 6.355
28 C 0.034 3.966
29 H 0.051 0.949
30 H 0.062 0.938
31 H 0.054 0.946
32 H 0.066 0.934
33 H 0.096 0.904
34 H 0.109 0.891
35 H 0.102 0.898
36 H 0.105 0.895
37 H 0.287 0.713
38 H 0.117 0.883
39 H 0.072 0.928
40 H 0.084 0.916
41 H 0.060 0.940
42 H 0.102 0.898
43 H 0.064 0.936
44 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.970 -9.605 8.028 21.901
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.187 4.187
3 C 0.048 3.952
4 H 0.111 0.889
5 O -0.263 6.263
6 C 0.360 3.640
7 O -0.399 6.399
8 C -0.096 4.096
9 C -0.212 4.212
10 C -0.107 4.107
11 C -0.232 4.232
12 C 0.076 3.924
13 C -0.471 4.471
14 H 0.112 0.888
15 C -0.136 4.136
16 N -0.426 5.426
17 Si 0.735 3.265
18 H -0.195 1.195
19 H -0.216 1.216
20 H -0.166 1.166
21 C -0.153 4.153
22 C -0.100 4.100
23 H 0.139 0.861
24 C -0.204 4.204
25 C 0.314 3.686
26 O -0.385 6.385
27 O -0.271 6.271
28 C -0.059 4.059
29 H 0.070 0.930
30 H 0.081 0.919
31 H 0.073 0.927
32 H 0.085 0.915
33 H 0.115 0.885
34 H 0.128 0.872
35 H 0.120 0.880
36 H 0.123 0.877
37 H 0.097 0.903
38 H 0.135 0.865
39 H 0.091 0.909
40 H 0.103 0.897
41 H 0.079 0.921
42 H 0.120 0.880
43 H 0.082 0.918
44 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 17.303 -9.595 8.509 21.537
hybrid contribution 0.411 0.304 -0.123 0.526
sum 17.714 -9.291 8.385 21.689
Atomic orbital electron populations
1.21769 0.94485 1.01194 1.02948 1.22223 0.97842 0.95032 1.03618
1.22365 0.91378 0.94454 0.87007 0.88865 1.86570 1.37974 1.64116
1.37594 1.21738 0.78252 0.75119 0.88902 1.90777 1.54842 1.58649
1.35652 1.18760 0.97381 1.02745 0.90748 1.20602 1.00249 1.07206
0.93140 1.20584 0.95877 0.97576 0.96684 1.21264 0.97483 1.06340
0.98124 1.17644 0.92682 0.92003 0.90078 1.19488 0.96764 1.10339
1.20501 0.88796 1.26162 0.97311 0.97151 0.93006 1.69690 1.23472
1.22482 1.26954 0.86334 0.82603 0.77259 0.80280 1.19453 1.21565
1.16629 1.21282 0.94525 1.01511 0.97976 1.20970 0.96150 0.99152
0.93747 0.86084 1.21789 1.01824 0.92473 1.04289 1.23416 0.80725
0.76520 0.87952 1.90660 1.51047 1.45259 1.51493 1.86497 1.27563
1.72087 1.40975 1.23303 1.02109 0.97319 0.83185 0.92974 0.91851
0.92736 0.91502 0.88541 0.87244 0.87956 0.87698 0.90261 0.86487
0.90877 0.89666 0.92062 0.87969 0.91757 0.91766
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.21 8.56 37.16 0.32 -1.89 16
2 C -0.15 -2.01 5.38 -26.73 -0.14 -2.16 16
3 C 0.10 1.45 1.47 -26.73 -0.04 1.41 16
4 H 0.09 1.49 7.12 -51.93 -0.37 1.12 16
5 O -0.34 -5.59 8.39 -40.52 -0.34 -5.93 16
6 C 0.51 9.97 6.35 34.63 0.22 10.19 16
7 O -0.51 -10.73 13.52 -19.24 -0.26 -10.99 16
8 C -0.10 -2.01 5.87 -105.05 -0.62 -2.63 16
9 C -0.19 -3.77 9.62 -38.91 -0.37 -4.15 16
10 C -0.09 -1.79 10.01 -39.73 -0.40 -2.19 16
11 C -0.21 -4.85 7.17 -38.81 -0.28 -5.13 16
12 C 0.08 1.94 5.10 -106.87 -0.55 1.40 16
13 C -0.44 -11.66 9.57 -37.73 -0.36 -12.02 16
14 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16
15 C 0.08 2.12 5.40 -17.35 -0.09 2.02 16
16 N -0.80 -20.83 13.93 55.55 0.77 -20.05 16
17 Si 0.91 19.91 24.52 -169.99 -4.17 15.74 16
18 H -0.27 -5.63 6.71 56.52 0.38 -5.26 16
19 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16
20 H -0.24 -5.43 6.86 56.52 0.39 -5.05 16
21 C -0.13 -3.12 9.34 -38.43 -0.36 -3.48 16
22 C -0.08 -0.88 2.64 -91.77 -0.24 -1.12 16
23 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16
24 C -0.15 -1.45 8.98 37.16 0.33 -1.12 16
25 C 0.47 5.25 6.94 36.01 0.25 5.50 16
26 O -0.50 -6.70 13.42 -18.75 -0.25 -6.96 16
27 O -0.35 -3.34 10.47 -39.25 -0.41 -3.75 16
28 C 0.03 0.23 10.56 101.05 1.07 1.29 16
29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
30 H 0.06 1.02 7.79 -51.93 -0.40 0.62 16
31 H 0.05 0.93 6.06 -51.93 -0.31 0.62 16
32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
33 H 0.10 1.27 5.42 -51.94 -0.28 0.99 16
34 H 0.11 1.87 7.59 -52.49 -0.40 1.47 16
35 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16
36 H 0.11 2.36 4.72 -52.48 -0.25 2.12 16
37 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16
38 H 0.12 2.75 7.64 -52.49 -0.40 2.35 16
39 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16
40 H 0.08 0.90 7.68 -51.93 -0.40 0.51 16
41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
42 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16
43 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16
44 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16
LS Contribution 361.39 15.07 5.45 5.45
Total: -1.00 -28.57 361.39 -6.68 -35.25
By element:
Atomic # 1 Polarization: 11.51 SS G_CDS: -6.21 Total: 5.30 kcal
Atomic # 6 Polarization: -12.80 SS G_CDS: -1.26 Total: -14.07 kcal
Atomic # 7 Polarization: -20.83 SS G_CDS: 0.77 Total: -20.05 kcal
Atomic # 8 Polarization: -26.36 SS G_CDS: -1.26 Total: -27.62 kcal
Atomic # 14 Polarization: 19.91 SS G_CDS: -4.17 Total: 15.74 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -28.57 -6.68 -35.25 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000836112968.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -128.812 kcal
(2) G-P(sol) polarization free energy of solvation -28.565 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.377 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.250 kcal
(6) G-S(sol) free energy of system = (1) + (5) -164.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds