Wall clock time and date at job start Tue Mar 31 2020 13:00:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 109.46486 * 2 1
4 4 H 1.08999 * 109.47466 * 55.00024 * 3 2 1
5 5 O 1.45200 * 109.47460 * 294.99671 * 3 2 1
6 6 C 1.34709 * 116.99749 * 89.99970 * 5 3 2
7 7 O 1.21464 * 120.00010 * 0.02562 * 6 5 3
8 8 C 1.47769 * 119.99825 * 179.97438 * 6 5 3
9 9 C 1.39965 * 120.03067 * 359.72882 * 8 6 5
10 10 C 1.38319 * 120.35071 * 179.75951 * 9 8 6
11 11 C 1.37755 * 120.41546 * 0.51533 * 10 9 8
12 12 C 1.40753 * 120.05661 * 359.74202 * 11 10 9
13 13 C 1.41441 * 120.17995 * 180.02562 * 12 11 10
14 14 H 1.08004 * 120.00012 * 150.17884 * 13 12 11
15 15 C 1.39930 * 119.99899 * 330.18518 * 13 12 11
16 16 N 1.30829 * 119.99998 * 161.73031 * 15 13 12
17 17 Si 1.86803 * 120.00255 * 341.72227 * 15 13 12
18 18 H 1.48495 * 109.46923 * 95.41404 * 17 15 13
19 19 H 1.48501 * 109.47340 * 215.41919 * 17 15 13
20 20 H 1.48497 * 109.46819 * 335.41905 * 17 15 13
21 21 C 1.39047 * 120.02726 * 180.02562 * 8 6 5
22 22 C 1.52997 * 109.46653 * 175.00165 * 3 2 1
23 23 H 1.09000 * 109.47881 * 60.00245 * 22 3 2
24 24 C 1.53004 * 109.47006 * 179.97438 * 22 3 2
25 25 C 1.50700 * 109.47295 * 299.99515 * 22 3 2
26 26 O 1.20832 * 119.99975 * 0.02562 * 25 22 3
27 27 O 1.34227 * 120.00235 * 179.97438 * 25 22 3
28 28 C 1.45207 * 117.00234 * 180.02562 * 27 25 22
29 29 H 1.09001 * 109.47118 * 179.97438 * 1 2 3
30 30 H 1.08995 * 109.47597 * 299.99637 * 1 2 3
31 31 H 1.09000 * 109.47595 * 60.00361 * 1 2 3
32 32 H 1.08998 * 109.46920 * 240.00664 * 2 1 3
33 33 H 1.08989 * 109.47168 * 119.99798 * 2 1 3
34 34 H 1.07992 * 119.82437 * 0.02562 * 9 8 6
35 35 H 1.07995 * 119.78882 * 180.26004 * 10 9 8
36 36 H 1.08004 * 119.97319 * 179.76385 * 11 10 9
37 37 H 0.97007 * 119.99753 * 179.97438 * 16 15 13
38 38 H 1.08002 * 120.20452 * 359.95863 * 21 8 6
39 39 H 1.09006 * 109.46920 * 179.97438 * 24 22 3
40 40 H 1.09000 * 109.47185 * 299.99937 * 24 22 3
41 41 H 1.09006 * 109.47092 * 60.00190 * 24 22 3
42 42 H 1.08999 * 109.46836 * 180.02562 * 28 27 25
43 43 H 1.09005 * 109.46661 * 300.00220 * 28 27 25
44 44 H 1.08994 * 109.46853 * 60.00316 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6052 1.9816 0.8418
5 8 1.6558 2.0918 -1.2407
6 6 0.4683 2.7277 -1.2560
7 8 -0.2270 2.7399 -0.2601
8 6 0.0121 3.4113 -2.4841
9 6 0.8158 3.4033 -3.6300
10 6 0.3931 4.0368 -4.7846
11 6 -0.8184 4.6917 -4.8172
12 6 -1.6381 4.7152 -3.6732
13 6 -2.8827 5.3864 -3.7039
14 1 -3.6970 5.0427 -3.0832
15 6 -3.0590 6.4955 -4.5386
16 7 -4.2654 6.8971 -4.8468
17 14 -1.5719 7.4031 -5.2127
18 1 -1.2518 6.8900 -6.5688
19 1 -1.8718 8.8554 -5.2909
20 1 -0.4100 7.1853 -4.3140
21 6 -1.2132 4.0683 -2.5004
22 6 3.5647 1.4444 0.1257
23 1 3.9994 0.9055 -0.7161
24 6 4.0747 2.8870 0.1250
25 6 3.9634 0.7708 1.4134
26 8 3.1150 0.3336 2.1544
27 8 5.2611 0.6555 1.7368
28 6 5.5716 -0.0053 2.9919
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5137 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 1.8933 -0.5137 -0.8900
33 1 1.8933 -0.5137 0.8899
34 1 1.7691 2.8961 -3.6138
35 1 1.0186 4.0214 -5.6648
36 1 -1.1397 5.1872 -5.7214
37 1 -4.3876 7.6662 -5.4252
38 1 -1.8349 4.0806 -1.6174
39 1 5.1610 2.8883 0.2151
40 1 3.7863 3.3739 -0.8065
41 1 3.6400 3.4264 0.9667
42 1 6.6523 -0.0309 3.1313
43 1 5.1123 0.5431 3.8145
44 1 5.1831 -1.0235 2.9722
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000836112968.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:33
Heat of formation + Delta-G solvation = -178.508885 kcal
Electronic energy + Delta-G solvation = -27011.004300 eV
Core-core repulsion = 23085.480618 eV
Total energy + Delta-G solvation = -3925.523681 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.14976 -41.40989 -39.53847 -38.22296 -37.45371 -35.65588 -35.33393 -33.58194
-32.55848 -31.84688 -28.77386 -27.95429 -27.14365 -25.57613 -24.53804 -22.84899
-22.47298 -21.87047 -21.34973 -19.86254 -18.87879 -18.25589 -17.87236 -17.68563
-17.46125 -17.28362 -16.89583 -16.48178 -15.63157 -15.38637 -15.23000 -15.03547
-14.73250 -14.58774 -14.47604 -14.27063 -13.86763 -13.69841 -13.55113 -13.40909
-13.29295 -13.03344 -12.91278 -12.85060 -12.72273 -12.63825 -12.33483 -12.06995
-11.93092 -11.81963 -11.73124 -11.65969 -11.52596 -11.26507 -11.23834 -11.03776
-9.71808 -9.63149 -8.91616 -6.56090 -0.02546 0.72453 1.02166 1.18088
1.26750 1.42648 1.48379 1.68581 2.02032 2.11895 2.59823 3.21837
3.39982 3.55494 3.67985 3.81808 3.97858 4.13412 4.19067 4.24571
4.29412 4.34069 4.34550 4.44464 4.51232 4.58202 4.71697 4.74759
4.82010 4.82941 4.85510 4.87564 4.92104 4.98196 5.13359 5.16615
5.22878 5.36477 5.36830 5.40644 5.63941 5.69853 5.82158 6.09105
6.28084 6.59356 6.61634 6.72216 6.78586 8.17200
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.026184 B = 0.002831 C = 0.002705
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1069.114964 B = 9886.484236 C =10348.403040
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.145 4.145
3 C 0.100 3.900
4 H 0.068 0.932
5 O -0.330 6.330
6 C 0.519 3.481
7 O -0.533 6.533
8 C -0.102 4.102
9 C -0.162 4.162
10 C -0.086 4.086
11 C -0.214 4.214
12 C 0.063 3.937
13 C -0.487 4.487
14 H 0.051 0.949
15 C 0.045 3.955
16 N -0.848 5.848
17 Si 0.964 3.036
18 H -0.245 1.245
19 H -0.278 1.278
20 H -0.249 1.249
21 C -0.159 4.159
22 C -0.075 4.075
23 H 0.150 0.850
24 C -0.145 4.145
25 C 0.476 3.524
26 O -0.527 6.527
27 O -0.352 6.352
28 C 0.027 3.973
29 H 0.070 0.930
30 H 0.042 0.958
31 H 0.030 0.970
32 H 0.088 0.912
33 H 0.102 0.898
34 H 0.151 0.849
35 H 0.150 0.850
36 H 0.110 0.890
37 H 0.295 0.705
38 H 0.095 0.905
39 H 0.097 0.903
40 H 0.081 0.919
41 H 0.048 0.952
42 H 0.135 0.865
43 H 0.059 0.941
44 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.896 -10.783 6.638 26.164
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.182 4.182
3 C 0.044 3.956
4 H 0.086 0.914
5 O -0.247 6.247
6 C 0.366 3.634
7 O -0.424 6.424
8 C -0.103 4.103
9 C -0.181 4.181
10 C -0.103 4.103
11 C -0.233 4.233
12 C 0.061 3.939
13 C -0.516 4.516
14 H 0.070 0.930
15 C -0.170 4.170
16 N -0.474 5.474
17 Si 0.786 3.214
18 H -0.170 1.170
19 H -0.205 1.205
20 H -0.173 1.173
21 C -0.178 4.178
22 C -0.094 4.094
23 H 0.167 0.833
24 C -0.202 4.202
25 C 0.320 3.680
26 O -0.417 6.417
27 O -0.268 6.268
28 C -0.066 4.066
29 H 0.089 0.911
30 H 0.061 0.939
31 H 0.049 0.951
32 H 0.106 0.894
33 H 0.120 0.880
34 H 0.168 0.832
35 H 0.168 0.832
36 H 0.128 0.872
37 H 0.106 0.894
38 H 0.114 0.886
39 H 0.115 0.885
40 H 0.100 0.900
41 H 0.068 0.932
42 H 0.153 0.847
43 H 0.078 0.922
44 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 22.257 -10.791 7.116 25.738
hybrid contribution -0.932 0.444 0.463 1.131
sum 21.326 -10.347 7.578 24.885
Atomic orbital electron populations
1.21735 0.96075 1.01726 1.00723 1.22216 0.96298 0.94813 1.04867
1.22556 0.93830 0.94160 0.85004 0.91355 1.86513 1.35947 1.63498
1.38729 1.21439 0.78958 0.75036 0.87991 1.90782 1.55804 1.59448
1.36407 1.18957 0.96682 1.02308 0.92388 1.21141 1.00692 1.04522
0.91699 1.21085 0.95040 0.95763 0.98446 1.21480 0.98199 1.06314
0.97334 1.17723 0.92579 0.92325 0.91279 1.19425 0.97079 1.12856
1.22241 0.93040 1.26904 0.99935 0.97133 0.92988 1.69725 1.25160
1.23749 1.28731 0.85507 0.78851 0.76626 0.80385 1.16950 1.20451
1.17256 1.21197 0.95883 1.03430 0.97326 1.20951 0.93415 1.00252
0.94788 0.83257 1.21803 1.03301 0.91510 1.03593 1.23415 0.81098
0.75859 0.87625 1.90659 1.51941 1.46690 1.52420 1.86482 1.26151
1.72011 1.42122 1.23607 1.04152 0.97003 0.81837 0.91076 0.93903
0.95091 0.89393 0.87979 0.83182 0.83199 0.87234 0.89402 0.88634
0.88461 0.90007 0.93239 0.84739 0.92176 0.91647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.34 8.56 71.98 0.62 -3.73 16
2 C -0.14 -3.63 5.38 30.60 0.16 -3.46 16
3 C 0.10 2.63 1.47 30.59 0.05 2.67 16
4 H 0.07 2.18 7.12 -2.39 -0.02 2.17 16
5 O -0.33 -9.89 8.39 -56.19 -0.47 -10.37 16
6 C 0.52 19.84 6.35 70.34 0.45 20.28 16
7 O -0.53 -23.14 13.52 19.95 0.27 -22.87 16
8 C -0.10 -4.21 5.87 -20.14 -0.12 -4.33 16
9 C -0.16 -5.64 9.62 22.71 0.22 -5.42 16
10 C -0.09 -3.05 10.01 22.17 0.22 -2.82 16
11 C -0.21 -9.36 7.17 22.77 0.16 -9.20 16
12 C 0.06 3.20 5.10 -21.32 -0.11 3.09 16
13 C -0.49 -27.45 9.57 23.47 0.22 -27.23 16
14 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16
15 C 0.05 2.38 5.40 85.25 0.46 2.84 16
16 N -0.85 -46.20 13.93 21.82 0.30 -45.90 16
17 Si 0.96 40.66 24.52 68.60 1.68 42.34 16
18 H -0.24 -9.33 6.71 99.48 0.67 -8.67 16
19 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16
20 H -0.25 -10.61 6.86 99.48 0.68 -9.93 16
21 C -0.16 -7.70 9.34 23.02 0.21 -7.48 16
22 C -0.08 -1.40 2.64 -11.54 -0.03 -1.43 16
23 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16
24 C -0.14 -2.45 8.98 71.98 0.65 -1.80 16
25 C 0.48 9.49 6.94 71.24 0.49 9.99 16
26 O -0.53 -13.56 13.42 21.95 0.29 -13.27 16
27 O -0.35 -5.54 10.47 -51.39 -0.54 -6.08 16
28 C 0.03 0.29 10.56 113.37 1.20 1.48 16
29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16
30 H 0.04 1.42 7.79 -2.39 -0.02 1.41 16
31 H 0.03 1.05 6.06 -2.39 -0.01 1.03 16
32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16
33 H 0.10 2.53 5.42 -2.39 -0.01 2.51 16
34 H 0.15 4.11 7.59 -2.91 -0.02 4.09 16
35 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16
36 H 0.11 4.68 4.72 -2.91 -0.01 4.66 16
37 H 0.30 14.34 8.30 -92.70 -0.77 13.57 16
38 H 0.10 4.91 7.64 -2.91 -0.02 4.89 16
39 H 0.10 1.18 8.11 -2.38 -0.02 1.16 16
40 H 0.08 1.46 7.68 -2.39 -0.02 1.44 16
41 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16
42 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16
43 H 0.06 0.70 8.13 -2.38 -0.02 0.68 16
44 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16
Total: -1.00 -66.57 361.39 7.34 -59.23
By element:
Atomic # 1 Polarization: 22.50 SS G_CDS: 0.95 Total: 23.45 kcal
Atomic # 6 Polarization: -31.39 SS G_CDS: 4.86 Total: -26.53 kcal
Atomic # 7 Polarization: -46.20 SS G_CDS: 0.30 Total: -45.90 kcal
Atomic # 8 Polarization: -52.14 SS G_CDS: -0.44 Total: -52.59 kcal
Atomic # 14 Polarization: 40.66 SS G_CDS: 1.68 Total: 42.34 kcal
Total: -66.57 7.34 -59.23 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000836112968.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -119.281 kcal
(2) G-P(sol) polarization free energy of solvation -66.571 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.852 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.228 kcal
(6) G-S(sol) free energy of system = (1) + (5) -178.509 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds