Wall clock time and date at job start Tue Mar 31 2020 13:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45205 * 109.47358 * 2 1 4 4 C 1.34227 * 117.00163 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00063 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99821 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46967 * 60.00283 * 6 4 3 8 8 C 1.53001 * 109.47482 * 300.00204 * 6 4 3 9 9 C 1.53000 * 109.47043 * 64.99785 * 8 6 4 10 10 C 1.50702 * 109.46973 * 179.97438 * 6 4 3 11 11 O 1.20822 * 120.00052 * 0.02562 * 10 6 4 12 12 O 1.34227 * 119.99544 * 180.02562 * 10 6 4 13 13 C 1.45205 * 116.99795 * 180.02562 * 12 10 6 14 14 C 1.50697 * 109.47141 * 180.02562 * 13 12 10 15 15 C 1.38638 * 119.74606 * 269.72300 * 14 13 12 16 16 C 1.37621 * 120.24755 * 179.72019 * 15 14 13 17 17 C 1.40718 * 119.74108 * 0.57711 * 16 15 14 18 18 C 1.41399 * 120.24264 * 179.67662 * 17 16 15 19 19 H 1.08000 * 119.99997 * 204.39703 * 18 17 16 20 20 C 1.39945 * 119.99725 * 24.40249 * 18 17 16 21 21 N 1.30824 * 120.00405 * 17.85665 * 20 18 17 22 22 Si 1.86797 * 119.99936 * 197.85493 * 20 18 17 23 23 H 1.48499 * 109.47149 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47189 * 120.00075 * 22 20 18 25 25 H 1.48505 * 109.47249 * 240.00131 * 22 20 18 26 26 C 1.40713 * 119.51470 * 359.70015 * 17 16 15 27 27 C 1.37621 * 119.74491 * 0.02562 * 26 17 16 28 28 H 1.09000 * 109.47235 * 60.00416 * 1 2 3 29 29 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47692 * 300.00123 * 1 2 3 31 31 H 1.09006 * 109.47476 * 240.00150 * 2 1 3 32 32 H 1.09000 * 109.47235 * 119.99584 * 2 1 3 33 33 H 1.09002 * 109.46857 * 184.99699 * 8 6 4 34 34 H 1.08999 * 109.46992 * 304.99824 * 8 6 4 35 35 H 1.08999 * 109.47194 * 60.00163 * 9 8 6 36 36 H 1.09004 * 109.47065 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47179 * 300.00245 * 9 8 6 38 38 H 1.09007 * 109.46874 * 299.99831 * 13 12 10 39 39 H 1.08999 * 109.46972 * 59.99668 * 13 12 10 40 40 H 1.07996 * 119.87536 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.12997 * 180.27512 * 16 15 14 42 42 H 0.97002 * 120.00394 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.13056 * 179.97438 * 26 17 16 44 44 H 1.07993 * 119.87567 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4698 0.8888 8 6 3.4487 3.6841 -1.2504 9 6 1.9317 3.8735 -1.1886 10 6 5.4256 2.8585 -0.0010 11 8 5.9741 1.7820 -0.0010 12 8 6.1566 3.9843 -0.0010 13 6 7.6007 3.8326 -0.0015 14 6 8.2487 5.1931 -0.0007 15 6 8.5495 5.8124 -1.2041 16 6 9.1361 7.0573 -1.2155 17 6 9.4416 7.6962 0.0005 18 6 10.0506 8.9723 0.0012 19 1 10.6320 9.2927 0.8530 20 6 9.8997 9.8201 -1.1020 21 7 8.9404 9.6060 -1.9653 22 14 11.0682 11.2576 -1.3418 23 1 12.0581 11.2809 -0.2351 24 1 11.7783 11.1075 -2.6374 25 1 10.2975 12.5270 -1.3439 26 6 9.1371 7.0556 1.2158 27 6 8.5454 5.8132 1.2032 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9349 4.6586 -1.2966 34 1 3.7069 3.1066 -2.1381 35 1 1.6735 4.4510 -0.3009 36 1 1.5953 4.4051 -2.0788 37 1 1.4454 2.8991 -1.1423 38 1 7.9086 3.2834 0.8884 39 1 7.9080 3.2838 -0.8916 40 1 8.3188 5.3179 -2.1360 41 1 9.3655 7.5399 -2.1540 42 1 8.8361 10.1934 -2.7301 43 1 9.3677 7.5367 2.1548 44 1 8.3104 5.3198 2.1347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840686880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:21 Heat of formation + Delta-G solvation = -165.484917 kcal Electronic energy + Delta-G solvation = -26175.207865 eV Core-core repulsion = 22250.248945 eV Total energy + Delta-G solvation = -3924.958920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13140 -39.79550 -37.73226 -36.85104 -35.83413 -35.18139 -33.86908 -31.89675 -30.83451 -29.39156 -28.98297 -27.13838 -24.46068 -23.75137 -22.49932 -22.03004 -21.10132 -20.28483 -20.04261 -18.15784 -17.40945 -17.15797 -16.84710 -16.63117 -16.07057 -15.74717 -15.35743 -14.64193 -14.34416 -14.06569 -13.86560 -13.74821 -13.50074 -13.13500 -13.10366 -12.87414 -12.53701 -12.25255 -12.19843 -12.05712 -11.97032 -11.96129 -11.74326 -11.34999 -11.19663 -11.15098 -11.00170 -10.83512 -10.68788 -10.49848 -10.45223 -10.14828 -9.95173 -9.68007 -9.48630 -9.23786 -7.57892 -7.46735 -6.88364 -4.47897 2.01605 2.05372 2.40656 2.56489 2.96932 2.99491 3.02485 3.07338 3.37702 3.84597 4.26426 4.49106 4.51046 4.62023 4.67369 4.71736 4.96428 5.00604 5.19796 5.25312 5.38216 5.44624 5.57037 5.60821 5.62945 5.66570 5.69990 5.83546 5.91226 6.06703 6.15377 6.24099 6.26962 6.30302 6.81789 6.86459 6.96086 7.16929 7.25080 7.50332 7.60188 7.72680 7.94592 7.99575 8.05619 8.17792 8.52604 8.77158 8.85255 10.05317 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027137 B = 0.002297 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.548596 B =12188.291013 C =12810.639703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.351 6.351 4 C 0.464 3.536 5 O -0.464 6.464 6 C -0.077 4.077 7 H 0.142 0.858 8 C -0.113 4.113 9 C -0.160 4.160 10 C 0.456 3.544 11 O -0.479 6.479 12 O -0.345 6.345 13 C 0.137 3.863 14 C -0.236 4.236 15 C -0.075 4.075 16 C -0.171 4.171 17 C 0.118 3.882 18 C -0.455 4.455 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.784 5.784 22 Si 0.910 3.090 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.273 1.273 26 C -0.230 4.230 27 C -0.063 4.063 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.282 0.718 43 H 0.095 0.905 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.982 -10.617 0.660 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.269 6.269 4 C 0.304 3.696 5 O -0.347 6.347 6 C -0.097 4.097 7 H 0.160 0.840 8 C -0.150 4.150 9 C -0.217 4.217 10 C 0.296 3.704 11 O -0.365 6.365 12 O -0.262 6.262 13 C 0.066 3.934 14 C -0.237 4.237 15 C -0.094 4.094 16 C -0.190 4.190 17 C 0.115 3.885 18 C -0.484 4.484 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.409 5.409 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.249 4.249 27 C -0.082 4.082 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.138 0.862 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.656 -11.168 0.445 18.431 hybrid contribution 0.539 0.472 -0.109 0.725 sum -14.117 -10.696 0.335 17.714 Atomic orbital electron populations 1.21803 0.92507 1.02960 1.03572 1.23052 0.95325 0.80392 1.02749 1.86546 1.23875 1.32077 1.84367 1.22861 0.81044 0.91553 0.74169 1.90825 1.59690 1.42105 1.42129 1.20713 0.90578 0.92859 1.05531 0.84029 1.21505 0.98140 1.01520 0.93859 1.21993 0.94008 1.03290 1.02417 1.22625 0.89726 0.83474 0.74583 1.90778 1.72951 1.29475 1.43335 1.86688 1.22851 1.33896 1.82789 1.21771 0.73822 0.96809 1.01048 1.18664 1.13384 0.97506 0.94138 1.20542 0.98455 0.95272 0.95085 1.21297 1.05038 0.93834 0.98818 1.17698 0.87733 0.92089 0.90961 1.19712 1.27709 0.99001 1.01945 0.90119 1.25977 0.94429 0.99279 0.94757 1.69833 1.24803 1.35559 1.10689 0.86236 0.80849 0.80099 0.79452 1.18284 1.19587 1.19871 1.20965 1.09725 0.97126 0.97128 1.20399 0.97737 0.94835 0.95209 0.91413 0.90294 0.91406 0.91189 0.91204 0.88268 0.90999 0.92029 0.91949 0.90646 0.92009 0.91933 0.89297 0.86222 0.90673 0.88704 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.15 0.38 -0.45 16 2 C 0.06 0.49 6.19 37.15 0.23 0.72 16 3 O -0.35 -3.66 7.36 -39.25 -0.29 -3.95 16 4 C 0.46 6.17 7.23 36.01 0.26 6.43 16 5 O -0.46 -7.94 13.94 -26.86 -0.37 -8.31 16 6 C -0.08 -0.96 2.76 -92.92 -0.26 -1.21 16 7 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16 8 C -0.11 -1.20 5.36 -26.73 -0.14 -1.35 16 9 C -0.16 -1.36 9.55 37.16 0.35 -1.00 16 10 C 0.46 7.62 7.25 36.01 0.26 7.88 16 11 O -0.48 -9.50 13.94 -26.86 -0.37 -9.87 16 12 O -0.35 -6.28 10.01 -39.25 -0.39 -6.67 16 13 C 0.14 2.63 5.58 36.00 0.20 2.83 16 14 C -0.24 -5.15 5.54 -104.33 -0.58 -5.73 16 15 C -0.07 -1.72 9.67 -39.66 -0.38 -2.11 16 16 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 17 C 0.12 3.06 5.58 -106.82 -0.60 2.47 16 18 C -0.45 -11.68 9.05 -37.74 -0.34 -12.02 16 19 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 20 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 21 N -0.78 -19.56 10.95 55.55 0.61 -18.96 16 22 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 27 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.10 1.12 8.00 -51.93 -0.42 0.70 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.64 5.46 -51.93 -0.28 0.36 16 38 H 0.06 1.13 8.07 -51.92 -0.42 0.71 16 39 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 40 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 42 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 43 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -30.41 373.86 -8.50 -38.91 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.48 Total: 4.46 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -1.80 Total: -14.18 kcal Atomic # 7 Polarization: -19.56 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.43 Total: -28.81 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.41 -8.50 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840686880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.572 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds