Wall clock time and date at job start Tue Mar 31 2020 13:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45205 * 109.47358 * 2 1 4 4 C 1.34227 * 117.00163 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00063 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99821 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46967 * 60.00283 * 6 4 3 8 8 C 1.53001 * 109.47482 * 300.00204 * 6 4 3 9 9 C 1.53000 * 109.47043 * 64.99785 * 8 6 4 10 10 C 1.50702 * 109.46973 * 179.97438 * 6 4 3 11 11 O 1.20822 * 120.00052 * 0.02562 * 10 6 4 12 12 O 1.34227 * 119.99544 * 180.02562 * 10 6 4 13 13 C 1.45205 * 116.99795 * 180.02562 * 12 10 6 14 14 C 1.50697 * 109.47141 * 180.02562 * 13 12 10 15 15 C 1.38638 * 119.74606 * 269.72300 * 14 13 12 16 16 C 1.37621 * 120.24755 * 179.72019 * 15 14 13 17 17 C 1.40718 * 119.74108 * 0.57711 * 16 15 14 18 18 C 1.41399 * 120.24264 * 179.67662 * 17 16 15 19 19 H 1.08000 * 119.99997 * 204.39703 * 18 17 16 20 20 C 1.39945 * 119.99725 * 24.40249 * 18 17 16 21 21 N 1.30824 * 120.00405 * 17.85665 * 20 18 17 22 22 Si 1.86797 * 119.99936 * 197.85493 * 20 18 17 23 23 H 1.48499 * 109.47149 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47189 * 120.00075 * 22 20 18 25 25 H 1.48505 * 109.47249 * 240.00131 * 22 20 18 26 26 C 1.40713 * 119.51470 * 359.70015 * 17 16 15 27 27 C 1.37621 * 119.74491 * 0.02562 * 26 17 16 28 28 H 1.09000 * 109.47235 * 60.00416 * 1 2 3 29 29 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47692 * 300.00123 * 1 2 3 31 31 H 1.09006 * 109.47476 * 240.00150 * 2 1 3 32 32 H 1.09000 * 109.47235 * 119.99584 * 2 1 3 33 33 H 1.09002 * 109.46857 * 184.99699 * 8 6 4 34 34 H 1.08999 * 109.46992 * 304.99824 * 8 6 4 35 35 H 1.08999 * 109.47194 * 60.00163 * 9 8 6 36 36 H 1.09004 * 109.47065 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47179 * 300.00245 * 9 8 6 38 38 H 1.09007 * 109.46874 * 299.99831 * 13 12 10 39 39 H 1.08999 * 109.46972 * 59.99668 * 13 12 10 40 40 H 1.07996 * 119.87536 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.12997 * 180.27512 * 16 15 14 42 42 H 0.97002 * 120.00394 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.13056 * 179.97438 * 26 17 16 44 44 H 1.07993 * 119.87567 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4698 0.8888 8 6 3.4487 3.6841 -1.2504 9 6 1.9317 3.8735 -1.1886 10 6 5.4256 2.8585 -0.0010 11 8 5.9741 1.7820 -0.0010 12 8 6.1566 3.9843 -0.0010 13 6 7.6007 3.8326 -0.0015 14 6 8.2487 5.1931 -0.0007 15 6 8.5495 5.8124 -1.2041 16 6 9.1361 7.0573 -1.2155 17 6 9.4416 7.6962 0.0005 18 6 10.0506 8.9723 0.0012 19 1 10.6320 9.2927 0.8530 20 6 9.8997 9.8201 -1.1020 21 7 8.9404 9.6060 -1.9653 22 14 11.0682 11.2576 -1.3418 23 1 12.0581 11.2809 -0.2351 24 1 11.7783 11.1075 -2.6374 25 1 10.2975 12.5270 -1.3439 26 6 9.1371 7.0556 1.2158 27 6 8.5454 5.8132 1.2032 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9349 4.6586 -1.2966 34 1 3.7069 3.1066 -2.1381 35 1 1.6735 4.4510 -0.3009 36 1 1.5953 4.4051 -2.0788 37 1 1.4454 2.8991 -1.1423 38 1 7.9086 3.2834 0.8884 39 1 7.9080 3.2838 -0.8916 40 1 8.3188 5.3179 -2.1360 41 1 9.3655 7.5399 -2.1540 42 1 8.8361 10.1934 -2.7301 43 1 9.3677 7.5367 2.1548 44 1 8.3104 5.3198 2.1347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840686880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:20 Heat of formation + Delta-G solvation = -178.887971 kcal Electronic energy + Delta-G solvation = -26175.789065 eV Core-core repulsion = 22250.248945 eV Total energy + Delta-G solvation = -3925.540120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27774 -41.05680 -39.48908 -37.99133 -37.21277 -36.15915 -35.65653 -32.62230 -32.47306 -31.23115 -30.01083 -28.79074 -25.83366 -24.88843 -23.33643 -23.10739 -22.93900 -21.84711 -21.40432 -19.28482 -19.23659 -18.14748 -18.07289 -17.86905 -17.36399 -17.09418 -16.92047 -15.93393 -15.63796 -15.59499 -15.26181 -14.87356 -14.52108 -14.40589 -14.13784 -14.04512 -13.84988 -13.63789 -13.52821 -13.47219 -13.08519 -12.94236 -12.83682 -12.68446 -12.61852 -12.59492 -12.13862 -12.09369 -11.96338 -11.72949 -11.61287 -11.52984 -11.39733 -11.29515 -11.16892 -11.02722 -9.43784 -9.33321 -8.68729 -6.39365 0.65004 0.98881 1.09985 1.11406 1.17830 1.39724 1.49202 1.54927 2.04869 2.20092 2.70184 3.26775 3.58317 3.64940 3.78394 3.93691 4.02388 4.07894 4.09384 4.09777 4.36116 4.39188 4.40862 4.48113 4.52537 4.55155 4.81273 4.82276 4.96066 5.01157 5.09262 5.12379 5.14226 5.21641 5.30419 5.38814 5.39834 5.42903 5.53144 5.65367 5.88259 6.06013 6.14557 6.32033 6.56838 6.64632 6.72268 6.88776 6.97194 8.27972 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027137 B = 0.002297 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.548596 B =12188.291013 C =12810.639703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.339 6.339 4 C 0.470 3.530 5 O -0.508 6.508 6 C -0.072 4.072 7 H 0.174 0.826 8 C -0.109 4.109 9 C -0.154 4.154 10 C 0.457 3.543 11 O -0.512 6.512 12 O -0.350 6.350 13 C 0.141 3.859 14 C -0.229 4.229 15 C -0.079 4.079 16 C -0.193 4.193 17 C 0.087 3.913 18 C -0.491 4.491 19 H 0.079 0.921 20 C 0.035 3.965 21 N -0.816 5.816 22 Si 0.984 3.016 23 H -0.258 1.258 24 H -0.264 1.264 25 H -0.264 1.264 26 C -0.244 4.244 27 C -0.064 4.064 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.291 0.709 43 H 0.103 0.897 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.668 -10.619 0.927 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.256 6.256 4 C 0.312 3.688 5 O -0.395 6.395 6 C -0.091 4.091 7 H 0.191 0.809 8 C -0.147 4.147 9 C -0.211 4.211 10 C 0.299 3.701 11 O -0.399 6.399 12 O -0.267 6.267 13 C 0.069 3.931 14 C -0.231 4.231 15 C -0.097 4.097 16 C -0.213 4.213 17 C 0.085 3.915 18 C -0.520 4.520 19 H 0.098 0.902 20 C -0.181 4.181 21 N -0.441 5.441 22 Si 0.804 3.196 23 H -0.181 1.181 24 H -0.189 1.189 25 H -0.189 1.189 26 C -0.264 4.264 27 C -0.083 4.083 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.385 -11.171 0.716 19.844 hybrid contribution 0.931 0.305 -0.172 0.995 sum -15.454 -10.865 0.545 18.899 Atomic orbital electron populations 1.21818 0.89828 1.04379 1.04046 1.23354 0.97325 0.79234 1.02461 1.86555 1.22048 1.33428 1.83544 1.22972 0.81652 0.91228 0.72949 1.90817 1.60848 1.43422 1.44424 1.20844 0.87245 0.93182 1.07825 0.80915 1.21531 0.99819 1.00719 0.92611 1.21961 0.91904 1.03659 1.03544 1.23356 0.91243 0.82369 0.73127 1.90774 1.73879 1.30454 1.44822 1.86648 1.22181 1.34786 1.83063 1.21602 0.74557 0.95054 1.01878 1.18935 1.12319 0.98200 0.93597 1.20769 0.97775 0.94664 0.96524 1.21267 1.06806 0.94993 0.98214 1.18056 0.88670 0.92898 0.91896 1.19948 1.29105 0.99762 1.03145 0.90244 1.26816 0.95586 1.01802 0.93931 1.69872 1.26003 1.36942 1.11299 0.85129 0.78450 0.76604 0.79380 1.18122 1.18891 1.18908 1.21173 1.10191 0.98088 0.96931 1.20712 0.96685 0.94259 0.96610 0.90887 0.88416 0.90924 0.91605 0.91552 0.88705 0.91607 0.90872 0.90915 0.90583 0.90956 0.91487 0.87576 0.87725 0.89841 0.87885 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 10.29 71.98 0.74 -0.48 16 2 C 0.05 0.77 6.19 71.98 0.45 1.21 16 3 O -0.34 -6.44 7.36 -51.39 -0.38 -6.82 16 4 C 0.47 11.93 7.23 71.24 0.51 12.44 16 5 O -0.51 -17.30 13.94 29.71 0.41 -16.89 16 6 C -0.07 -1.65 2.76 -12.28 -0.03 -1.69 16 7 H 0.17 2.91 8.14 -2.39 -0.02 2.89 16 8 C -0.11 -2.13 5.36 30.59 0.16 -1.97 16 9 C -0.15 -2.18 9.55 71.98 0.69 -1.49 16 10 C 0.46 14.77 7.25 71.24 0.52 15.28 16 11 O -0.51 -20.08 13.94 29.73 0.41 -19.67 16 12 O -0.35 -12.23 10.01 -51.39 -0.51 -12.75 16 13 C 0.14 5.22 5.58 71.23 0.40 5.62 16 14 C -0.23 -9.84 5.54 -19.68 -0.11 -9.95 16 15 C -0.08 -3.64 9.67 22.22 0.21 -3.43 16 16 C -0.19 -10.07 8.70 22.73 0.20 -9.87 16 17 C 0.09 4.66 5.58 -21.29 -0.12 4.54 16 18 C -0.49 -25.89 9.05 23.46 0.21 -25.68 16 19 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 20 C 0.03 1.71 5.14 85.26 0.44 2.14 16 21 N -0.82 -41.52 10.95 21.83 0.24 -41.28 16 22 Si 0.98 36.99 29.59 68.60 2.03 39.02 16 23 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 25 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 26 C -0.24 -11.82 9.80 22.73 0.22 -11.59 16 27 C -0.06 -2.80 9.67 22.22 0.21 -2.59 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 1.08 8.13 -2.38 -0.02 1.06 16 32 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.09 1.97 8.00 -2.39 -0.02 1.95 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.08 1.08 5.46 -2.39 -0.01 1.07 16 38 H 0.07 2.53 8.07 -2.38 -0.02 2.51 16 39 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 40 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.10 5.67 6.16 -2.91 -0.02 5.65 16 42 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 43 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 44 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -67.09 373.86 7.91 -59.18 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.99 Total: 26.68 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 4.71 Total: -27.49 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.24 Total: -41.28 kcal Atomic # 8 Polarization: -56.05 SS G_CDS: -0.06 Total: -56.12 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Total: -67.09 7.91 -59.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840686880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.706 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds