Wall clock time and date at job start Tue Mar 31 2020 12:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50693 * 120.00618 * 2 1 4 4 C 1.52997 * 109.47349 * 119.99948 * 3 2 1 5 5 C 1.53005 * 109.47275 * 240.00133 * 3 2 1 6 6 C 1.52994 * 109.46911 * 299.99791 * 5 3 2 7 7 O 1.42903 * 109.47064 * 179.97438 * 6 5 3 8 8 C 1.42900 * 113.99984 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47075 * 359.97438 * 3 2 1 10 10 O 1.20830 * 120.00262 * 240.00358 * 9 3 2 11 11 O 1.34271 * 120.00035 * 59.99952 * 9 3 2 12 12 C 1.35926 * 116.99997 * 175.04139 * 11 9 3 13 13 C 1.38818 * 120.01653 * 245.95088 * 12 11 9 14 14 C 1.38193 * 120.07979 * 180.02562 * 13 12 11 15 15 C 1.38155 * 120.12248 * 359.97438 * 14 13 12 16 16 C 1.38897 * 120.04177 * 0.02562 * 15 14 13 17 17 O 1.35745 * 120.04258 * 180.02562 * 16 15 14 18 18 C 1.34834 * 117.00188 * 185.90276 * 17 16 15 19 19 H 1.07992 * 119.99689 * 5.53918 * 18 17 16 20 20 C 1.38653 * 119.99982 * 185.54958 * 18 17 16 21 21 N 1.31560 * 120.00122 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99972 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47182 * 89.99713 * 22 20 18 24 24 H 1.48495 * 109.47296 * 209.99369 * 22 20 18 25 25 H 1.48501 * 109.47234 * 329.99609 * 22 20 18 26 26 C 1.38568 * 120.02105 * 65.97490 * 12 11 9 27 27 H 1.07998 * 120.00428 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99583 * 0.02562 * 1 2 3 29 29 H 1.08008 * 119.99911 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47307 * 300.00019 * 4 3 2 31 31 H 1.09001 * 109.47469 * 60.00216 * 4 3 2 32 32 H 1.09008 * 109.47042 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47010 * 59.99275 * 5 3 2 34 34 H 1.08992 * 109.47071 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47395 * 300.00111 * 6 5 3 36 36 H 1.09005 * 109.47554 * 60.00072 * 6 5 3 37 37 H 1.08994 * 109.47417 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.47601 * 300.00419 * 8 7 6 39 39 H 1.09004 * 109.47463 * 60.00202 * 8 7 6 40 40 H 1.08002 * 119.96281 * 0.04307 * 13 12 11 41 41 H 1.07994 * 119.94242 * 180.02562 * 14 13 12 42 42 H 1.07994 * 119.98047 * 180.02562 * 15 14 13 43 43 H 0.96996 * 119.99827 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.06229 * 359.69915 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3860 1.2492 5 6 2.9432 1.3860 -1.2493 6 6 3.9373 0.2230 -1.2493 7 8 4.7585 0.2983 -2.4164 8 6 5.7274 -0.7476 -2.5138 9 6 1.0844 2.4505 -0.0006 10 8 1.0898 3.2495 -0.9070 11 8 0.2058 2.5833 1.0060 12 6 -0.5785 3.6934 0.9982 13 6 -0.4399 4.6487 1.9958 14 6 -1.2370 5.7775 1.9894 15 6 -2.1736 5.9592 0.9902 16 6 -2.3166 5.0067 -0.0105 17 8 -3.2365 5.1854 -0.9925 18 6 -3.4095 4.1692 -1.8617 19 1 -2.8954 3.2323 -1.7062 20 6 -4.2472 4.3272 -2.9552 21 7 -4.8738 5.4685 -3.1444 22 14 -4.4863 2.9196 -4.1597 23 1 -5.6291 2.0799 -3.7193 24 1 -4.7663 3.4670 -5.5114 25 1 -3.2535 2.0930 -4.2060 26 6 -1.5172 3.8719 -0.0054 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 2.3166 1.3283 2.1392 31 1 3.6515 0.5575 1.2493 32 1 3.4880 2.3302 1.2494 33 1 2.3165 1.3282 -2.1393 34 1 3.4879 2.3300 -1.2495 35 1 4.5640 0.2807 -0.3593 36 1 3.3923 -0.7210 -1.2493 37 1 6.3096 -0.6197 -3.4263 38 1 6.3914 -0.7094 -1.6502 39 1 5.2198 -1.7119 -2.5394 40 1 0.2920 4.5097 2.7778 41 1 -1.1270 6.5195 2.7663 42 1 -2.7951 6.8425 0.9872 43 1 -5.4601 5.5788 -3.9092 44 1 -1.6233 3.1319 -0.7848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:10 Heat of formation + Delta-G solvation = -100.568121 kcal Electronic energy + Delta-G solvation = -27165.509342 eV Core-core repulsion = 23243.365425 eV Total energy + Delta-G solvation = -3922.143916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.33253 -39.13026 -38.38901 -37.34733 -36.24730 -35.74567 -32.30913 -31.91418 -29.93063 -29.25733 -28.88473 -26.62927 -25.63341 -25.24841 -23.44458 -22.05218 -21.68516 -21.02007 -19.10900 -18.28390 -17.80338 -17.01140 -16.67922 -16.36383 -16.13348 -15.65577 -15.16613 -15.04582 -14.90889 -14.41823 -14.14630 -13.94685 -13.67680 -13.54476 -13.44703 -13.14172 -12.85325 -12.59137 -12.26558 -12.15135 -11.93662 -11.87710 -11.57296 -11.54373 -11.27081 -11.18452 -11.03514 -10.91097 -10.80880 -10.48235 -10.34974 -10.14743 -9.88227 -9.56793 -9.52792 -8.86871 -8.14995 -7.35366 -6.48247 -4.07297 1.74972 2.11603 2.20886 2.30882 2.91354 3.12182 3.14184 3.18860 3.56217 3.95160 4.38275 4.44143 4.54215 4.67111 4.87114 4.88482 4.98845 5.06297 5.06928 5.10737 5.13702 5.20416 5.22147 5.37480 5.48247 5.50744 5.59406 5.73792 5.78401 5.81823 5.93166 5.99772 6.07023 6.14306 6.26085 6.45817 6.53412 6.56231 6.87266 6.89900 7.00828 7.08146 7.13196 7.32247 7.58902 7.95191 8.13282 8.96997 9.63080 10.69265 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.003914 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.875582 B = 7152.590721 C = 8808.519391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.164 4.164 3 C -0.012 4.012 4 C -0.143 4.143 5 C -0.100 4.100 6 C 0.063 3.937 7 O -0.390 6.390 8 C 0.032 3.968 9 C 0.463 3.537 10 O -0.472 6.472 11 O -0.290 6.290 12 C 0.117 3.883 13 C -0.212 4.212 14 C -0.065 4.065 15 C -0.189 4.189 16 C 0.163 3.837 17 O -0.170 6.170 18 C -0.391 4.391 19 H 0.090 0.910 20 C 0.042 3.958 21 N -0.859 5.859 22 Si 0.939 3.061 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.267 1.267 26 C -0.230 4.230 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.271 0.729 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.686 -12.568 7.650 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C -0.013 4.013 4 C -0.200 4.200 5 C -0.137 4.137 6 C -0.014 4.014 7 O -0.309 6.309 8 C -0.065 4.065 9 C 0.304 3.696 10 O -0.355 6.355 11 O -0.205 6.205 12 C 0.076 3.924 13 C -0.231 4.231 14 C -0.083 4.083 15 C -0.208 4.208 16 C 0.109 3.891 17 O -0.072 6.072 18 C -0.467 4.467 19 H 0.107 0.893 20 C -0.163 4.163 21 N -0.494 5.494 22 Si 0.764 3.236 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.191 1.191 26 C -0.250 4.250 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.143 0.857 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.320 -11.863 6.963 21.344 hybrid contribution -0.121 -0.977 -0.529 1.118 sum 16.199 -12.841 6.434 21.649 Atomic orbital electron populations 1.24306 0.96003 1.03354 0.96847 1.22554 0.95803 0.96031 1.03790 1.19560 0.93299 0.90197 0.98287 1.21931 0.99294 1.03071 0.95709 1.21371 0.96534 0.99220 0.96588 1.22621 0.92460 0.98428 0.87865 1.87899 1.49282 1.50015 1.43676 1.22740 0.91490 0.90297 1.01944 1.23620 0.79797 0.86049 0.80088 1.90764 1.67566 1.42490 1.34692 1.84594 1.46004 1.41239 1.48665 1.18286 0.91242 0.86132 0.96743 1.20411 1.05580 0.95083 1.02029 1.20481 0.94566 0.96019 0.97234 1.20321 1.03612 1.00930 0.95936 1.19142 0.88191 0.92238 0.89530 1.84011 1.47909 1.40898 1.34429 1.21295 1.28812 0.92025 1.04591 0.89266 1.25281 0.95785 0.98209 0.96996 1.70033 1.26818 1.23715 1.28793 0.85733 0.79168 0.79614 0.79130 1.19723 1.20063 1.19102 1.21207 1.00651 1.01670 1.01469 0.87422 0.87482 0.85710 0.90624 0.90750 0.91491 0.89688 0.89727 0.92740 0.92803 0.89603 0.94100 0.94083 0.86698 0.85981 0.85906 0.91891 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 13.57 29.02 0.39 -1.73 16 2 C -0.16 -1.79 8.04 -36.03 -0.29 -2.08 16 3 C -0.01 -0.15 0.71 -156.81 -0.11 -0.26 16 4 C -0.14 -1.33 8.04 37.16 0.30 -1.03 16 5 C -0.10 -1.22 3.92 -26.73 -0.10 -1.32 16 6 C 0.06 0.60 5.33 37.15 0.20 0.79 16 7 O -0.39 -4.36 10.70 -35.23 -0.38 -4.74 16 8 C 0.03 0.23 11.01 101.05 1.11 1.35 16 9 C 0.46 7.89 5.17 36.01 0.19 8.07 16 10 O -0.47 -9.88 15.05 -18.75 -0.28 -10.17 16 11 O -0.29 -5.14 8.06 -23.64 -0.19 -5.33 16 12 C 0.12 2.38 5.46 -39.24 -0.21 2.16 16 13 C -0.21 -3.87 9.98 -39.38 -0.39 -4.26 16 14 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 15 C -0.19 -4.02 9.99 -39.37 -0.39 -4.41 16 16 C 0.16 4.09 6.64 -39.13 -0.26 3.83 16 17 O -0.17 -4.93 9.76 0.05 0.00 -4.93 16 18 C -0.39 -11.24 9.44 30.89 0.29 -10.95 16 19 H 0.09 2.43 5.30 -52.49 -0.28 2.15 16 20 C 0.04 1.18 5.49 -17.51 -0.10 1.08 16 21 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 22 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 26 C -0.23 -5.40 7.98 -39.25 -0.31 -5.71 16 27 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 28 H 0.11 1.69 5.26 -52.48 -0.28 1.42 16 29 H 0.13 0.99 7.00 -52.48 -0.37 0.63 16 30 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 31 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 32 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 35 H 0.05 0.42 6.43 -51.93 -0.33 0.08 16 36 H 0.05 0.44 6.62 -51.93 -0.34 0.10 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.13 3.19 5.72 -52.49 -0.30 2.89 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -33.63 369.10 -5.66 -39.29 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.01 Total: 4.99 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.09 Total: -16.03 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.76 Total: -24.69 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.85 Total: -25.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.63 -5.66 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.280 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds