Wall clock time and date at job start Tue Mar 31 2020 12:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50693 * 120.00618 * 2 1 4 4 C 1.52997 * 109.47349 * 119.99948 * 3 2 1 5 5 C 1.53005 * 109.47275 * 240.00133 * 3 2 1 6 6 C 1.52994 * 109.46911 * 299.99791 * 5 3 2 7 7 O 1.42903 * 109.47064 * 179.97438 * 6 5 3 8 8 C 1.42900 * 113.99984 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47075 * 359.97438 * 3 2 1 10 10 O 1.20830 * 120.00262 * 240.00358 * 9 3 2 11 11 O 1.34271 * 120.00035 * 59.99952 * 9 3 2 12 12 C 1.35926 * 116.99997 * 175.04139 * 11 9 3 13 13 C 1.38818 * 120.01653 * 245.95088 * 12 11 9 14 14 C 1.38193 * 120.07979 * 180.02562 * 13 12 11 15 15 C 1.38155 * 120.12248 * 359.97438 * 14 13 12 16 16 C 1.38897 * 120.04177 * 0.02562 * 15 14 13 17 17 O 1.35745 * 120.04258 * 180.02562 * 16 15 14 18 18 C 1.34834 * 117.00188 * 185.90276 * 17 16 15 19 19 H 1.07992 * 119.99689 * 5.53918 * 18 17 16 20 20 C 1.38653 * 119.99982 * 185.54958 * 18 17 16 21 21 N 1.31560 * 120.00122 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99972 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47182 * 89.99713 * 22 20 18 24 24 H 1.48495 * 109.47296 * 209.99369 * 22 20 18 25 25 H 1.48501 * 109.47234 * 329.99609 * 22 20 18 26 26 C 1.38568 * 120.02105 * 65.97490 * 12 11 9 27 27 H 1.07998 * 120.00428 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99583 * 0.02562 * 1 2 3 29 29 H 1.08008 * 119.99911 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47307 * 300.00019 * 4 3 2 31 31 H 1.09001 * 109.47469 * 60.00216 * 4 3 2 32 32 H 1.09008 * 109.47042 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47010 * 59.99275 * 5 3 2 34 34 H 1.08992 * 109.47071 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47395 * 300.00111 * 6 5 3 36 36 H 1.09005 * 109.47554 * 60.00072 * 6 5 3 37 37 H 1.08994 * 109.47417 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.47601 * 300.00419 * 8 7 6 39 39 H 1.09004 * 109.47463 * 60.00202 * 8 7 6 40 40 H 1.08002 * 119.96281 * 0.04307 * 13 12 11 41 41 H 1.07994 * 119.94242 * 180.02562 * 14 13 12 42 42 H 1.07994 * 119.98047 * 180.02562 * 15 14 13 43 43 H 0.96996 * 119.99827 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.06229 * 359.69915 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3860 1.2492 5 6 2.9432 1.3860 -1.2493 6 6 3.9373 0.2230 -1.2493 7 8 4.7585 0.2983 -2.4164 8 6 5.7274 -0.7476 -2.5138 9 6 1.0844 2.4505 -0.0006 10 8 1.0898 3.2495 -0.9070 11 8 0.2058 2.5833 1.0060 12 6 -0.5785 3.6934 0.9982 13 6 -0.4399 4.6487 1.9958 14 6 -1.2370 5.7775 1.9894 15 6 -2.1736 5.9592 0.9902 16 6 -2.3166 5.0067 -0.0105 17 8 -3.2365 5.1854 -0.9925 18 6 -3.4095 4.1692 -1.8617 19 1 -2.8954 3.2323 -1.7062 20 6 -4.2472 4.3272 -2.9552 21 7 -4.8738 5.4685 -3.1444 22 14 -4.4863 2.9196 -4.1597 23 1 -5.6291 2.0799 -3.7193 24 1 -4.7663 3.4670 -5.5114 25 1 -3.2535 2.0930 -4.2060 26 6 -1.5172 3.8719 -0.0054 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 2.3166 1.3283 2.1392 31 1 3.6515 0.5575 1.2493 32 1 3.4880 2.3302 1.2494 33 1 2.3165 1.3282 -2.1393 34 1 3.4879 2.3300 -1.2495 35 1 4.5640 0.2807 -0.3593 36 1 3.3923 -0.7210 -1.2493 37 1 6.3096 -0.6197 -3.4263 38 1 6.3914 -0.7094 -1.6502 39 1 5.2198 -1.7119 -2.5394 40 1 0.2920 4.5097 2.7778 41 1 -1.1270 6.5195 2.7663 42 1 -2.7951 6.8425 0.9872 43 1 -5.4601 5.5788 -3.9092 44 1 -1.6233 3.1319 -0.7848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:09 Heat of formation + Delta-G solvation = -121.685860 kcal Electronic energy + Delta-G solvation = -27166.425076 eV Core-core repulsion = 23243.365425 eV Total energy + Delta-G solvation = -3923.059650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.75361 -40.77022 -39.54074 -38.64206 -37.42802 -37.40133 -34.38129 -32.82767 -31.48615 -30.71588 -30.09853 -27.54473 -27.26415 -26.43365 -24.71680 -23.44756 -22.95005 -22.51811 -20.35386 -20.16764 -19.46278 -18.26520 -17.81571 -17.72058 -16.98678 -16.92258 -16.87423 -16.36681 -16.11307 -15.83078 -15.60391 -15.47927 -15.07947 -14.81369 -14.66088 -14.42777 -14.27404 -13.82329 -13.68650 -13.36167 -13.13990 -13.01444 -12.82903 -12.76977 -12.67679 -12.57275 -12.33767 -12.22831 -12.03212 -11.94769 -11.79439 -11.68243 -11.34024 -10.88784 -10.56832 -10.47802 -9.81686 -9.18471 -8.57136 -6.26147 0.10493 0.51993 0.94378 1.18058 1.26079 1.35260 1.43591 1.57422 2.09337 2.67992 2.81898 3.02220 3.26619 3.38382 3.50202 3.78074 3.93785 3.97041 4.13491 4.15544 4.17186 4.27001 4.30300 4.43999 4.49016 4.56867 4.58404 4.67321 4.75738 4.79867 4.87392 4.89733 4.90404 4.95542 4.97459 5.05719 5.24293 5.29083 5.40994 5.45150 5.49045 5.52575 5.62778 5.90127 5.96260 6.26333 6.64831 6.86742 7.62053 8.65364 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.003914 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.875582 B = 7152.590721 C = 8808.519391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C -0.008 4.008 4 C -0.140 4.140 5 C -0.097 4.097 6 C 0.067 3.933 7 O -0.424 6.424 8 C 0.025 3.975 9 C 0.460 3.540 10 O -0.522 6.522 11 O -0.281 6.281 12 C 0.108 3.892 13 C -0.189 4.189 14 C -0.046 4.046 15 C -0.196 4.196 16 C 0.125 3.875 17 O -0.220 6.220 18 C -0.417 4.417 19 H 0.087 0.913 20 C -0.015 4.015 21 N -0.912 5.912 22 Si 1.012 2.988 23 H -0.254 1.254 24 H -0.263 1.263 25 H -0.264 1.264 26 C -0.247 4.247 27 H 0.130 0.870 28 H 0.065 0.935 29 H 0.171 0.829 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.161 0.839 41 H 0.178 0.822 42 H 0.131 0.869 43 H 0.276 0.724 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.720 -14.953 10.194 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.160 4.160 3 C -0.010 4.010 4 C -0.197 4.197 5 C -0.135 4.135 6 C -0.009 4.009 7 O -0.344 6.344 8 C -0.070 4.070 9 C 0.305 3.695 10 O -0.407 6.407 11 O -0.196 6.196 12 C 0.067 3.933 13 C -0.207 4.207 14 C -0.064 4.064 15 C -0.215 4.215 16 C 0.074 3.926 17 O -0.126 6.126 18 C -0.493 4.493 19 H 0.104 0.896 20 C -0.213 4.213 21 N -0.549 5.549 22 Si 0.831 3.169 23 H -0.178 1.178 24 H -0.187 1.187 25 H -0.189 1.189 26 C -0.267 4.267 27 H 0.148 0.852 28 H 0.084 0.916 29 H 0.188 0.812 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.179 0.821 41 H 0.196 0.804 42 H 0.149 0.851 43 H 0.085 0.915 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.391 -14.266 9.567 25.905 hybrid contribution -0.809 -0.196 -1.066 1.352 sum 18.582 -14.462 8.501 25.034 Atomic orbital electron populations 1.24275 0.96917 1.02559 0.99571 1.22880 0.95188 0.96744 1.01189 1.19797 0.92541 0.88549 1.00071 1.22014 0.99317 1.04773 0.93596 1.21319 0.96667 1.00295 0.95234 1.22648 0.92264 0.97408 0.88580 1.87853 1.50311 1.51732 1.44544 1.22940 0.91199 0.89844 1.03057 1.24838 0.79385 0.86596 0.78716 1.90749 1.68967 1.44741 1.36290 1.84632 1.45754 1.40259 1.48921 1.18522 0.90912 0.87421 0.96427 1.21049 1.04957 0.93481 1.01258 1.21098 0.91937 0.96692 0.96680 1.20715 1.04636 1.00368 0.95796 1.19757 0.88789 0.94040 0.90025 1.83959 1.50686 1.41702 1.36281 1.21626 1.29681 0.92474 1.05470 0.89552 1.26508 0.95028 1.01296 0.98510 1.70149 1.28470 1.26170 1.30113 0.84698 0.79496 0.76078 0.76635 1.17837 1.18705 1.18867 1.21143 1.02133 1.01121 1.02300 0.85164 0.91627 0.81178 0.90269 0.86954 0.91506 0.92869 0.91246 0.89900 0.90918 0.89177 0.92364 0.92829 0.82129 0.80449 0.85092 0.91461 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.85 13.57 67.78 0.92 -3.93 16 2 C -0.14 -2.75 8.04 25.65 0.21 -2.55 16 3 C -0.01 -0.19 0.71 -53.68 -0.04 -0.23 16 4 C -0.14 -2.07 8.04 71.98 0.58 -1.49 16 5 C -0.10 -2.30 3.92 30.59 0.12 -2.18 16 6 C 0.07 1.06 5.33 71.98 0.38 1.44 16 7 O -0.42 -8.66 10.70 -148.98 -1.59 -10.25 16 8 C 0.03 0.30 11.01 113.37 1.25 1.55 16 9 C 0.46 15.92 5.17 71.24 0.37 16.29 16 10 O -0.52 -23.07 15.05 21.95 0.33 -22.74 16 11 O -0.28 -9.94 8.06 4.46 0.04 -9.90 16 12 C 0.11 4.43 5.46 22.49 0.12 4.55 16 13 C -0.19 -6.32 9.98 22.40 0.22 -6.10 16 14 C -0.05 -1.52 10.03 22.24 0.22 -1.30 16 15 C -0.20 -8.40 9.99 22.41 0.22 -8.17 16 16 C 0.12 6.63 6.64 22.56 0.15 6.78 16 17 O -0.22 -13.87 9.76 -22.73 -0.22 -14.09 16 18 C -0.42 -25.91 9.44 67.92 0.64 -25.27 16 19 H 0.09 5.18 5.30 -2.91 -0.02 5.16 16 20 C -0.01 -0.88 5.49 84.83 0.47 -0.41 16 21 N -0.91 -57.29 13.67 21.61 0.30 -56.99 16 22 Si 1.01 45.34 29.55 68.60 2.03 47.37 16 23 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 26 C -0.25 -12.34 7.98 22.48 0.18 -12.16 16 27 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 28 H 0.07 2.20 5.26 -2.91 -0.02 2.18 16 29 H 0.17 1.81 7.00 -2.91 -0.02 1.79 16 30 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 31 H 0.11 0.85 6.43 -2.39 -0.02 0.84 16 32 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 34 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.08 0.85 6.43 -2.39 -0.02 0.83 16 36 H 0.07 0.87 6.62 -2.38 -0.02 0.86 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.05 0.49 8.14 -2.38 -0.02 0.48 16 40 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 41 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 42 H 0.13 5.30 8.06 -2.91 -0.02 5.27 16 43 H 0.28 15.78 8.31 -92.71 -0.77 15.00 16 44 H 0.10 5.60 5.72 -2.91 -0.02 5.58 16 Total: -1.00 -83.45 369.10 7.89 -75.55 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 1.01 Total: 24.23 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 6.02 Total: -33.18 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.30 Total: -56.99 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -1.45 Total: -56.98 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -83.45 7.89 -75.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.132 kcal (2) G-P(sol) polarization free energy of solvation -83.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds