Wall clock time and date at job start Tue Mar 31 2020 12:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46790 * 2 1 4 4 H 1.08995 * 109.48552 * 54.97368 * 3 2 1 5 5 C 1.53096 * 109.47884 * 174.99938 * 3 2 1 6 6 C 1.53174 * 109.16266 * 177.60150 * 5 3 2 7 7 H 1.09000 * 109.54467 * 62.88644 * 6 5 3 8 8 C 1.50702 * 109.61714 * 183.10776 * 6 5 3 9 9 O 1.20827 * 119.99942 * 359.60110 * 8 6 5 10 10 O 1.34271 * 120.00220 * 179.59660 * 8 6 5 11 11 C 1.35913 * 117.00141 * 175.01218 * 10 8 6 12 12 C 1.38823 * 120.02096 * 255.02449 * 11 10 8 13 13 C 1.38190 * 120.07714 * 179.78897 * 12 11 10 14 14 C 1.38153 * 120.13001 * 0.46619 * 13 12 11 15 15 C 1.38892 * 120.03662 * 359.78621 * 14 13 12 16 16 O 1.35745 * 120.04243 * 180.02562 * 15 14 13 17 17 C 1.34834 * 117.00299 * 185.57348 * 16 15 14 18 18 H 1.07994 * 120.00047 * 354.93857 * 17 16 15 19 19 C 1.38652 * 119.99841 * 174.93438 * 17 16 15 20 20 N 1.31562 * 120.00475 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46772 * 60.00205 * 21 19 17 23 23 H 1.48501 * 109.47449 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47312 * 300.00645 * 21 19 17 25 25 C 1.38577 * 120.02195 * 75.29828 * 11 10 8 26 26 C 1.53182 * 109.03645 * 303.01772 * 6 5 3 27 27 C 1.53093 * 109.21583 * 56.95117 * 26 6 5 28 28 O 1.42905 * 109.48896 * 294.94577 * 3 2 1 29 29 H 1.09009 * 109.47076 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47776 * 299.99980 * 1 2 3 31 31 H 1.09000 * 109.47732 * 60.00451 * 1 2 3 32 32 H 1.09002 * 109.47092 * 239.99819 * 2 1 3 33 33 H 1.09000 * 109.46840 * 119.99743 * 2 1 3 34 34 H 1.09004 * 109.52075 * 57.69713 * 5 3 2 35 35 H 1.08998 * 109.57317 * 297.53585 * 5 3 2 36 36 H 1.07995 * 119.96025 * 0.02562 * 12 11 10 37 37 H 1.08007 * 119.93567 * 180.21250 * 13 12 11 38 38 H 1.07998 * 119.98326 * 179.76802 * 14 13 12 39 39 H 0.96991 * 119.99989 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.05561 * 359.97438 * 25 11 10 41 41 H 1.09005 * 109.52193 * 176.88714 * 26 6 5 42 42 H 1.08994 * 109.52327 * 297.01268 * 26 6 5 43 43 H 1.09001 * 109.48049 * 62.40121 * 27 26 6 44 44 H 1.08996 * 109.48326 * 182.44472 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6050 1.9819 0.8414 5 6 3.5657 1.4447 0.1258 6 6 4.0732 2.8886 0.0648 7 1 3.6789 3.4498 0.9120 8 6 5.5795 2.8978 0.1111 9 8 6.1878 1.8570 0.1926 10 8 6.2456 4.0626 0.0616 11 6 7.5952 4.0085 0.2124 12 6 8.1772 4.4090 1.4074 13 6 9.5490 4.3503 1.5635 14 6 10.3463 3.9023 0.5280 15 6 9.7698 3.5054 -0.6717 16 8 10.5530 3.0647 -1.6891 17 6 9.9428 2.8048 -2.8630 18 1 8.8676 2.8707 -2.9390 19 6 10.6960 2.4529 -3.9727 20 7 12.0058 2.3722 -3.8802 21 14 9.8506 2.0922 -5.5990 22 1 9.0976 3.2929 -6.0425 23 1 10.8704 1.7418 -6.6201 24 1 8.9117 0.9546 -5.4272 25 6 8.3917 3.5590 -0.8287 26 6 3.5967 3.5309 -1.2417 27 6 2.0699 3.4481 -1.3163 28 8 1.6631 2.0814 -1.2215 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.9995 0.8711 -0.6934 35 1 3.8543 0.9970 1.0768 36 1 7.5569 4.7631 2.2174 37 1 9.9992 4.6592 2.4954 38 1 11.4184 3.8610 0.6512 39 1 12.5326 2.1264 -4.6566 40 1 7.9409 3.2508 -1.7606 41 1 3.9066 4.5756 -1.2682 42 1 4.0321 3.0002 -2.0884 43 1 1.6345 4.0139 -0.4926 44 1 1.7291 3.8649 -2.2641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:18 Heat of formation + Delta-G solvation = -138.736136 kcal Electronic energy + Delta-G solvation = -26888.719829 eV Core-core repulsion = 22964.920824 eV Total energy + Delta-G solvation = -3923.799006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15536 -39.71775 -38.73700 -37.10425 -35.74913 -34.38543 -33.95599 -32.32680 -30.10629 -29.79157 -28.95362 -26.64797 -25.42806 -24.18221 -23.14578 -21.93740 -21.57539 -20.90651 -20.03300 -18.32137 -17.87574 -17.20247 -16.72409 -16.32463 -16.09624 -15.49060 -15.16429 -14.91877 -14.60292 -14.34369 -14.24140 -13.97402 -13.81934 -13.66639 -13.55877 -13.21735 -13.01933 -12.58117 -12.12111 -12.09218 -11.89609 -11.67825 -11.52023 -11.44436 -11.33985 -11.17423 -11.07925 -10.97023 -10.83869 -10.66245 -10.53168 -10.34078 -10.30884 -9.77595 -9.54201 -8.89107 -8.19342 -7.38208 -6.50150 -4.09711 1.73175 2.18354 2.28430 2.99312 3.11548 3.13470 3.15174 3.50151 3.93208 4.24700 4.39037 4.44300 4.56449 4.62578 4.79319 4.82422 5.01672 5.02528 5.06285 5.10455 5.14452 5.22146 5.38758 5.39696 5.48583 5.54540 5.57699 5.70291 5.73418 5.75211 5.84737 5.86036 5.97396 6.01505 6.07311 6.13277 6.29254 6.52936 6.86637 6.96619 6.97701 7.06047 7.10669 7.30406 7.56282 7.93257 8.11862 8.94751 9.60588 10.67222 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012091 B = 0.003478 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.303318 B = 8048.437585 C = 9594.844943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.093 3.907 4 H 0.060 0.940 5 C -0.138 4.138 6 C -0.076 4.076 7 H 0.109 0.891 8 C 0.457 3.543 9 O -0.480 6.480 10 O -0.295 6.295 11 C 0.119 3.881 12 C -0.213 4.213 13 C -0.065 4.065 14 C -0.187 4.187 15 C 0.164 3.836 16 O -0.169 6.169 17 C -0.394 4.394 18 H 0.090 0.910 19 C 0.042 3.958 20 N -0.860 5.860 21 Si 0.940 3.060 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.269 1.269 25 C -0.230 4.230 26 C -0.152 4.152 27 C 0.066 3.934 28 O -0.377 6.377 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.272 0.728 40 H 0.131 0.869 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.537 1.370 8.126 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C 0.036 3.964 4 H 0.078 0.922 5 C -0.175 4.175 6 C -0.095 4.095 7 H 0.127 0.873 8 C 0.299 3.701 9 O -0.364 6.364 10 O -0.211 6.211 11 C 0.079 3.921 12 C -0.232 4.232 13 C -0.083 4.083 14 C -0.206 4.206 15 C 0.109 3.891 16 O -0.072 6.072 17 C -0.470 4.470 18 H 0.107 0.893 19 C -0.163 4.163 20 N -0.494 5.494 21 Si 0.764 3.236 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.249 4.249 26 C -0.189 4.189 27 C -0.011 4.011 28 O -0.296 6.296 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.967 0.823 7.798 21.451 hybrid contribution -0.072 0.012 -0.612 0.617 sum -20.039 0.835 7.186 21.305 Atomic orbital electron populations 1.21715 0.95171 1.01560 1.02196 1.21546 0.96651 0.94081 1.03176 1.22156 0.92638 0.94471 0.87175 0.92167 1.22196 0.95996 0.94412 1.04924 1.21073 0.87548 0.99567 1.01348 0.87334 1.23882 0.91066 0.82004 0.73117 1.90729 1.69758 1.32895 1.43010 1.84498 1.19687 1.34592 1.82284 1.18221 0.78944 1.00819 0.94131 1.20486 0.95328 1.11285 0.96147 1.20486 0.92360 0.97848 0.97622 1.20332 1.00087 1.07563 0.92635 1.19123 0.89003 0.91282 0.89685 1.83995 1.34307 1.70815 1.18110 1.21268 0.92654 1.48444 0.84603 0.89251 1.25286 0.95548 0.96450 0.98967 1.70022 1.04576 1.43635 1.31158 0.85790 0.78687 0.79325 0.79756 1.19366 1.20072 1.19383 1.21193 0.93986 1.09426 1.00335 1.22251 0.97507 1.02771 0.96411 1.22564 0.92712 0.83200 1.02608 1.87943 1.78382 1.24685 1.38553 0.92749 0.93003 0.91901 0.90808 0.90426 0.89611 0.89805 0.86807 0.85973 0.85846 0.91811 0.85120 0.89077 0.90053 0.92841 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.81 37.16 0.36 -0.73 16 2 C -0.12 -0.97 5.64 -26.73 -0.15 -1.12 16 3 C 0.09 0.85 2.65 -26.68 -0.07 0.78 16 4 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.14 -1.51 4.02 -26.59 -0.11 -1.61 16 6 C -0.08 -0.87 2.71 -91.59 -0.25 -1.12 16 7 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 8 C 0.46 7.55 7.12 36.01 0.26 7.80 16 9 O -0.48 -9.69 15.41 -18.75 -0.29 -9.98 16 10 O -0.30 -5.27 9.96 -23.60 -0.23 -5.50 16 11 C 0.12 2.45 5.18 -39.24 -0.20 2.25 16 12 C -0.21 -3.93 9.99 -39.38 -0.39 -4.32 16 13 C -0.06 -1.17 10.03 -39.63 -0.40 -1.57 16 14 C -0.19 -3.98 9.99 -39.37 -0.39 -4.37 16 15 C 0.16 4.08 6.64 -39.13 -0.26 3.82 16 16 O -0.17 -4.92 9.76 0.05 0.00 -4.91 16 17 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 18 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 19 C 0.04 1.18 5.49 -17.51 -0.10 1.09 16 20 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 21 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 C -0.23 -5.39 8.58 -39.25 -0.34 -5.73 16 26 C -0.15 -1.55 5.35 -26.59 -0.14 -1.70 16 27 C 0.07 0.56 6.85 37.21 0.25 0.81 16 28 O -0.38 -3.89 9.94 -35.23 -0.35 -4.24 16 29 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.51 7.83 -51.93 -0.41 0.11 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.13 3.17 5.64 -52.48 -0.30 2.87 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -33.12 367.91 -7.67 -40.79 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.45 Total: 3.71 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.63 Total: -16.69 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.76 Total: -24.56 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.87 Total: -24.64 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.12 -7.67 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.948 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds