Wall clock time and date at job start Tue Mar 31 2020 12:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47254 * 273.86906 * 3 2 1 5 5 C 1.37097 * 119.99720 * 264.39586 * 4 3 2 6 6 H 1.08003 * 119.99078 * 196.17656 * 5 4 3 7 7 C 1.38937 * 120.00250 * 16.17252 * 5 4 3 8 8 N 1.31409 * 120.00289 * 20.85582 * 7 5 4 9 9 Si 1.86802 * 120.00162 * 200.85365 * 7 5 4 10 10 H 1.48495 * 109.47264 * 84.94092 * 9 7 5 11 11 H 1.48501 * 109.47443 * 204.94396 * 9 7 5 12 12 H 1.48504 * 109.46746 * 324.94501 * 9 7 5 13 13 C 1.34773 * 119.99798 * 84.39054 * 4 3 2 14 14 O 1.21290 * 120.00244 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00102 * 0.02562 * 13 4 3 16 16 C 1.50707 * 109.47015 * 179.97438 * 15 13 4 17 17 S 1.76191 * 126.03824 * 270.25444 * 16 15 13 18 18 C 1.70979 * 90.28157 * 180.02562 * 17 16 15 19 19 C 1.50700 * 124.91697 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.46781 * 269.71927 * 19 18 17 21 21 C 1.52999 * 109.47073 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47408 * 180.02562 * 21 20 19 23 23 N 1.29029 * 110.16586 * 359.71047 * 18 17 16 24 24 C 1.31780 * 117.12516 * 0.23334 * 23 18 17 25 25 C 1.50699 * 122.75015 * 179.97438 * 24 23 18 26 26 H 4.40647 * 5.51415 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46765 * 153.87074 * 3 2 1 28 28 H 1.09000 * 109.47346 * 33.87018 * 3 2 1 29 29 H 0.97003 * 120.00317 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47088 * 60.00155 * 15 13 4 31 31 H 1.08997 * 109.46935 * 299.99872 * 15 13 4 32 32 H 1.08995 * 109.47474 * 149.71564 * 19 18 17 33 33 H 1.09001 * 109.47287 * 29.71669 * 19 18 17 34 34 H 1.09003 * 109.47170 * 60.00199 * 20 19 18 35 35 H 1.08996 * 109.47671 * 299.99738 * 20 19 18 36 36 H 1.09001 * 109.47179 * 299.99854 * 21 20 19 37 37 H 1.09003 * 109.47398 * 59.99856 * 21 20 19 38 38 H 1.08999 * 109.47396 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.47183 * 300.00109 * 22 21 20 40 40 H 1.09003 * 109.47101 * 59.99499 * 22 21 20 41 41 H 1.09000 * 109.46822 * 90.01820 * 25 24 23 42 42 H 1.08998 * 109.47184 * 210.02085 * 25 24 23 43 43 H 1.08997 * 109.47273 * 330.02531 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.0923 1.3781 5 6 3.4718 1.0458 2.0640 6 1 4.0673 0.9781 2.9624 7 6 3.0475 2.2860 1.6034 8 7 2.0195 2.3680 0.7889 9 14 3.9383 3.8371 2.1419 10 1 5.1096 4.0672 1.2586 11 1 3.0141 4.9959 2.0504 12 1 4.3995 3.6813 3.5449 13 6 3.2521 -1.2967 1.9715 14 8 3.6560 -1.3737 3.1126 15 6 2.8817 -2.5477 1.2172 16 6 3.1036 -3.7499 2.0986 17 16 4.5951 -4.6788 2.2285 18 6 3.8603 -5.7145 3.3734 19 6 4.5381 -6.8851 4.0376 20 6 4.3162 -8.1457 3.1994 21 6 5.0048 -9.3341 3.8734 22 6 4.7835 -10.5946 3.0349 23 7 2.6432 -5.3453 3.5905 24 6 2.2055 -4.2962 2.9238 25 6 0.8069 -3.7569 3.0790 26 1 -1.0500 0.0002 0.0001 27 1 3.0089 0.9235 -0.4526 28 1 3.0098 -0.8524 -0.5727 29 1 1.7231 3.2339 0.4676 30 1 3.5029 -2.6317 0.3256 31 1 1.8325 -2.4991 0.9259 32 1 4.1178 -7.0317 5.0326 33 1 5.6068 -6.6872 4.1202 34 1 4.7366 -7.9991 2.2044 35 1 3.2475 -8.3437 3.1168 36 1 6.0735 -9.1360 3.9556 37 1 4.5849 -9.4809 4.8685 38 1 5.2737 -11.4413 3.5153 39 1 3.7148 -10.7930 2.9522 40 1 5.2037 -10.4475 2.0399 41 1 0.7912 -3.0113 3.8739 42 1 0.4888 -3.2974 2.1432 43 1 0.1292 -4.5722 3.3323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890402642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:13 Heat of formation + Delta-G solvation = 52.693185 kcal Electronic energy + Delta-G solvation = -24020.847080 eV Core-core repulsion = 20580.394695 eV Total energy + Delta-G solvation = -3440.452385 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.77122 -38.56414 -36.13238 -35.22344 -33.12527 -32.14653 -31.27511 -30.63701 -29.29560 -26.60448 -25.94350 -25.17303 -23.89053 -22.04552 -21.20601 -19.69554 -18.23408 -17.87516 -17.58383 -16.66204 -16.22971 -15.60266 -15.08297 -14.85071 -14.48947 -14.26875 -14.12571 -13.78908 -13.50852 -13.34004 -12.97809 -12.65768 -12.56836 -12.40785 -12.24260 -12.13917 -12.04611 -11.63929 -11.48775 -11.35302 -11.32744 -11.15567 -11.03032 -10.76564 -10.73394 -10.51777 -10.34554 -9.42711 -9.34011 -9.31574 -8.95215 -8.90299 -8.52917 -8.13596 -7.91726 -6.36901 -3.89060 1.04224 1.66769 2.08506 3.10594 3.13185 3.23667 3.27930 3.62569 3.85648 3.99551 4.15521 4.19543 4.70834 4.76565 4.84434 4.90795 5.01412 5.12313 5.22613 5.23686 5.41328 5.41981 5.43766 5.51663 5.61778 5.66661 5.71627 5.76673 5.81041 5.90700 5.90766 6.03738 6.05817 6.11934 6.16660 6.25407 6.32657 6.65081 6.72462 6.98452 7.53189 7.99344 8.07664 8.38507 8.75065 9.09455 9.30935 9.85544 10.63829 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.002929 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.365305 B = 9557.443109 C =10104.352762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.115 4.115 3 C 0.229 3.771 4 N -0.439 5.439 5 C -0.313 4.313 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.453 3.547 14 O -0.572 6.572 15 C -0.061 4.061 16 C -0.173 4.173 17 S 0.116 5.884 18 C 0.034 3.966 19 C -0.039 4.039 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.153 4.153 23 N -0.466 5.466 24 C 0.063 3.937 25 C -0.074 4.074 26 H 0.200 0.800 27 H 0.114 0.886 28 H 0.061 0.939 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 -17.092 -2.005 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.116 4.116 3 C 0.106 3.894 4 N -0.158 5.158 5 C -0.440 4.440 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.502 5.502 9 Si 0.749 3.251 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.241 3.759 14 O -0.455 6.455 15 C -0.104 4.104 16 C -0.294 4.294 17 S 0.373 5.627 18 C -0.244 4.244 19 C -0.080 4.080 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.210 4.210 23 N -0.180 5.180 24 C -0.067 4.067 25 C -0.133 4.133 26 H 0.217 0.783 27 H 0.132 0.868 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.422 -17.200 -1.592 17.609 hybrid contribution -0.881 1.475 0.243 1.735 sum 2.541 -15.725 -1.349 15.986 Atomic orbital electron populations 1.24295 0.95382 1.06127 1.02015 1.23186 0.94343 0.95677 0.98422 1.18331 0.84320 1.02000 0.84795 1.43699 1.56077 1.05224 1.10829 1.19666 1.31137 0.82407 1.10779 0.87783 1.25273 0.95244 0.99306 0.97493 1.70074 1.20906 1.25683 1.33526 0.86004 0.79118 0.80592 0.79397 1.20252 1.21098 1.19493 1.19777 0.84891 0.84014 0.87245 1.90552 1.50531 1.86246 1.18204 1.20112 1.03693 0.89805 0.96770 1.25072 0.95325 1.02922 1.06117 1.83670 1.16204 1.22660 1.40195 1.26686 0.93672 1.02083 1.01932 1.20211 0.99303 0.89237 0.99200 1.21620 1.01669 0.92987 0.98934 1.21526 1.00722 0.94481 0.99416 1.21769 1.01746 0.97392 1.00096 1.66040 1.12903 1.14667 1.24431 1.19975 0.98723 0.93184 0.94851 1.20303 0.89466 1.00539 1.03005 0.78338 0.86812 0.92144 0.92087 0.89316 0.87961 0.89131 0.89946 0.91702 0.91286 0.91851 0.91780 0.92803 0.92718 0.92713 0.90524 0.90899 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 19.25 29.55 0.57 -4.58 16 2 C -0.11 -2.47 10.95 -37.12 -0.41 -2.87 16 3 C 0.23 4.88 4.91 -6.83 -0.03 4.84 16 4 N -0.44 -10.81 2.60 -117.93 -0.31 -11.12 16 5 C -0.31 -8.45 9.35 -14.94 -0.14 -8.59 16 6 H 0.10 3.00 7.36 -52.48 -0.39 2.61 16 7 C 0.03 0.79 4.90 -17.47 -0.09 0.71 16 8 N -0.86 -22.16 9.39 55.49 0.52 -21.64 16 9 Si 0.92 20.29 29.60 -169.99 -5.03 15.25 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.45 10.77 7.56 -10.98 -0.08 10.69 16 14 O -0.57 -15.71 15.67 5.55 0.09 -15.63 16 15 C -0.06 -1.13 4.52 -29.03 -0.13 -1.27 16 16 C -0.17 -3.18 5.08 -35.92 -0.18 -3.36 16 17 S 0.12 1.83 23.18 -107.50 -2.49 -0.66 16 18 C 0.03 0.52 6.64 -13.46 -0.09 0.43 16 19 C -0.04 -0.43 5.80 -27.88 -0.16 -0.59 16 20 C -0.11 -1.06 5.20 -26.73 -0.14 -1.20 16 21 C -0.12 -0.93 5.93 -26.73 -0.16 -1.09 16 22 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 23 N -0.47 -8.20 10.53 -8.06 -0.08 -8.29 16 24 C 0.06 1.16 6.74 -84.23 -0.57 0.59 16 25 C -0.07 -1.21 10.06 36.01 0.36 -0.85 16 26 H 0.20 3.20 7.80 -54.09 -0.42 2.77 16 27 H 0.11 2.57 6.34 -51.93 -0.33 2.24 16 28 H 0.06 1.05 6.67 -51.93 -0.35 0.71 16 29 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.09 1.42 7.41 -51.93 -0.39 1.03 16 31 H 0.10 1.79 6.14 -51.93 -0.32 1.47 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.07 1.12 6.72 -51.93 -0.35 0.77 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -31.75 375.43 -8.85 -40.60 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.32 Total: 3.61 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.88 Total: -7.80 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.13 Total: -41.05 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.63 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.25 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.49 Total: -0.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.75 -8.85 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890402642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.293 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds