Wall clock time and date at job start Tue Mar 31 2020 12:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47254 * 273.86906 * 3 2 1 5 5 C 1.37097 * 119.99720 * 264.39586 * 4 3 2 6 6 H 1.08003 * 119.99078 * 196.17656 * 5 4 3 7 7 C 1.38937 * 120.00250 * 16.17252 * 5 4 3 8 8 N 1.31409 * 120.00289 * 20.85582 * 7 5 4 9 9 Si 1.86802 * 120.00162 * 200.85365 * 7 5 4 10 10 H 1.48495 * 109.47264 * 84.94092 * 9 7 5 11 11 H 1.48501 * 109.47443 * 204.94396 * 9 7 5 12 12 H 1.48504 * 109.46746 * 324.94501 * 9 7 5 13 13 C 1.34773 * 119.99798 * 84.39054 * 4 3 2 14 14 O 1.21290 * 120.00244 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00102 * 0.02562 * 13 4 3 16 16 C 1.50707 * 109.47015 * 179.97438 * 15 13 4 17 17 S 1.76191 * 126.03824 * 270.25444 * 16 15 13 18 18 C 1.70979 * 90.28157 * 180.02562 * 17 16 15 19 19 C 1.50700 * 124.91697 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.46781 * 269.71927 * 19 18 17 21 21 C 1.52999 * 109.47073 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47408 * 180.02562 * 21 20 19 23 23 N 1.29029 * 110.16586 * 359.71047 * 18 17 16 24 24 C 1.31780 * 117.12516 * 0.23334 * 23 18 17 25 25 C 1.50699 * 122.75015 * 179.97438 * 24 23 18 26 26 H 4.40647 * 5.51415 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46765 * 153.87074 * 3 2 1 28 28 H 1.09000 * 109.47346 * 33.87018 * 3 2 1 29 29 H 0.97003 * 120.00317 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47088 * 60.00155 * 15 13 4 31 31 H 1.08997 * 109.46935 * 299.99872 * 15 13 4 32 32 H 1.08995 * 109.47474 * 149.71564 * 19 18 17 33 33 H 1.09001 * 109.47287 * 29.71669 * 19 18 17 34 34 H 1.09003 * 109.47170 * 60.00199 * 20 19 18 35 35 H 1.08996 * 109.47671 * 299.99738 * 20 19 18 36 36 H 1.09001 * 109.47179 * 299.99854 * 21 20 19 37 37 H 1.09003 * 109.47398 * 59.99856 * 21 20 19 38 38 H 1.08999 * 109.47396 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.47183 * 300.00109 * 22 21 20 40 40 H 1.09003 * 109.47101 * 59.99499 * 22 21 20 41 41 H 1.09000 * 109.46822 * 90.01820 * 25 24 23 42 42 H 1.08998 * 109.47184 * 210.02085 * 25 24 23 43 43 H 1.08997 * 109.47273 * 330.02531 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.0923 1.3781 5 6 3.4718 1.0458 2.0640 6 1 4.0673 0.9781 2.9624 7 6 3.0475 2.2860 1.6034 8 7 2.0195 2.3680 0.7889 9 14 3.9383 3.8371 2.1419 10 1 5.1096 4.0672 1.2586 11 1 3.0141 4.9959 2.0504 12 1 4.3995 3.6813 3.5449 13 6 3.2521 -1.2967 1.9715 14 8 3.6560 -1.3737 3.1126 15 6 2.8817 -2.5477 1.2172 16 6 3.1036 -3.7499 2.0986 17 16 4.5951 -4.6788 2.2285 18 6 3.8603 -5.7145 3.3734 19 6 4.5381 -6.8851 4.0376 20 6 4.3162 -8.1457 3.1994 21 6 5.0048 -9.3341 3.8734 22 6 4.7835 -10.5946 3.0349 23 7 2.6432 -5.3453 3.5905 24 6 2.2055 -4.2962 2.9238 25 6 0.8069 -3.7569 3.0790 26 1 -1.0500 0.0002 0.0001 27 1 3.0089 0.9235 -0.4526 28 1 3.0098 -0.8524 -0.5727 29 1 1.7231 3.2339 0.4676 30 1 3.5029 -2.6317 0.3256 31 1 1.8325 -2.4991 0.9259 32 1 4.1178 -7.0317 5.0326 33 1 5.6068 -6.6872 4.1202 34 1 4.7366 -7.9991 2.2044 35 1 3.2475 -8.3437 3.1168 36 1 6.0735 -9.1360 3.9556 37 1 4.5849 -9.4809 4.8685 38 1 5.2737 -11.4413 3.5153 39 1 3.7148 -10.7930 2.9522 40 1 5.2037 -10.4475 2.0399 41 1 0.7912 -3.0113 3.8739 42 1 0.4888 -3.2974 2.1432 43 1 0.1292 -4.5722 3.3323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890402642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:12 Heat of formation + Delta-G solvation = 35.852726 kcal Electronic energy + Delta-G solvation = -24021.577337 eV Core-core repulsion = 20580.394695 eV Total energy + Delta-G solvation = -3441.182642 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15430 -40.28401 -37.19278 -36.82580 -34.46826 -33.84266 -33.02105 -31.76632 -30.52645 -28.33533 -27.36728 -26.35067 -25.48478 -23.04120 -21.92940 -21.36686 -19.76698 -19.50851 -18.88336 -18.39303 -17.99864 -16.62146 -16.38511 -16.31610 -15.96975 -15.80044 -15.70951 -14.77416 -14.58076 -14.52516 -14.34758 -14.21654 -13.94336 -13.74521 -13.66879 -13.49851 -13.40017 -13.02290 -12.90242 -12.75640 -12.46215 -12.19643 -12.14369 -12.11462 -12.04144 -11.83567 -11.42889 -11.19478 -11.09226 -10.66423 -10.57929 -10.45449 -10.10093 -9.84058 -9.48732 -8.32160 -5.92054 -0.25171 0.41787 0.79666 1.36083 1.42234 1.52019 1.77693 1.89217 2.13959 2.33533 2.39613 3.04254 3.08976 3.23356 3.77821 3.85769 3.88808 4.02834 4.06681 4.07016 4.16001 4.36650 4.45034 4.46916 4.47295 4.66148 4.69010 4.72911 4.76873 4.85590 4.91175 5.00649 5.02613 5.04322 5.12637 5.29758 5.34078 5.41443 5.44649 5.47303 5.50783 6.04566 6.44276 6.78811 7.14240 7.15918 7.41191 7.97825 8.65815 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.002929 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.365305 B = 9557.443109 C =10104.352762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.155 4.155 3 C 0.230 3.770 4 N -0.450 5.450 5 C -0.348 4.348 6 H 0.072 0.928 7 C 0.005 3.995 8 N -0.870 5.870 9 Si 0.982 3.018 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.446 3.554 14 O -0.620 6.620 15 C -0.046 4.046 16 C -0.208 4.208 17 S 0.137 5.863 18 C 0.044 3.956 19 C -0.040 4.040 20 C -0.106 4.106 21 C -0.120 4.120 22 C -0.153 4.153 23 N -0.492 5.492 24 C 0.052 3.948 25 C -0.071 4.071 26 H 0.233 0.767 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.272 0.728 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 -18.156 -2.872 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.157 4.157 3 C 0.108 3.892 4 N -0.168 5.168 5 C -0.476 4.476 6 H 0.090 0.910 7 C -0.199 4.199 8 N -0.507 5.507 9 Si 0.806 3.194 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.236 3.764 14 O -0.506 6.506 15 C -0.088 4.088 16 C -0.329 4.329 17 S 0.394 5.606 18 C -0.234 4.234 19 C -0.081 4.081 20 C -0.145 4.145 21 C -0.158 4.158 22 C -0.211 4.211 23 N -0.207 5.207 24 C -0.079 4.079 25 C -0.131 4.131 26 H 0.249 0.751 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.517 -18.262 -2.508 18.766 hybrid contribution -0.933 1.757 0.550 2.064 sum 2.584 -16.506 -1.958 16.821 Atomic orbital electron populations 1.25145 0.96331 1.04460 1.00181 1.23419 0.94933 0.97251 1.00069 1.18397 0.84733 1.02812 0.83283 1.43885 1.56030 1.04945 1.11981 1.19503 1.32652 0.84319 1.11103 0.90972 1.25898 0.95477 1.01174 0.97350 1.70162 1.20864 1.26383 1.33320 0.85132 0.78466 0.77352 0.78454 1.18924 1.20230 1.20672 1.20616 0.83535 0.85236 0.87046 1.90506 1.52482 1.87159 1.20495 1.19956 1.04696 0.87197 0.96934 1.25161 0.96834 1.03668 1.07266 1.83493 1.14925 1.21975 1.40174 1.27477 0.93061 1.02133 1.00711 1.20458 0.99994 0.88400 0.99260 1.21568 1.01234 0.92783 0.98920 1.21506 1.01093 0.93766 0.99417 1.21774 1.01682 0.97420 1.00183 1.66113 1.14090 1.15185 1.25334 1.20298 0.99443 0.93442 0.94674 1.20302 0.89465 1.00626 1.02668 0.75084 0.88551 0.88378 0.91777 0.86662 0.86920 0.88717 0.88005 0.91501 0.92447 0.90831 0.91467 0.91821 0.93074 0.92592 0.92593 0.90095 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.17 19.25 74.32 1.43 -7.74 16 2 C -0.16 -6.52 10.95 31.12 0.34 -6.18 16 3 C 0.23 9.73 4.91 84.57 0.42 10.15 16 4 N -0.45 -22.54 2.60 -645.42 -1.68 -24.22 16 5 C -0.35 -19.42 9.35 84.04 0.79 -18.63 16 6 H 0.07 4.39 7.36 -2.91 -0.02 4.37 16 7 C 0.00 0.24 4.90 84.92 0.42 0.65 16 8 N -0.87 -44.41 9.39 21.66 0.20 -44.20 16 9 Si 0.98 41.86 29.60 68.60 2.03 43.89 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.45 21.62 7.56 87.66 0.66 22.28 16 14 O -0.62 -35.33 15.67 -3.06 -0.05 -35.38 16 15 C -0.05 -1.67 4.52 29.11 0.13 -1.54 16 16 C -0.21 -7.57 5.08 24.64 0.13 -7.45 16 17 S 0.14 4.20 23.18 -56.49 -1.31 2.90 16 18 C 0.04 1.30 6.64 88.52 0.59 1.89 16 19 C -0.04 -0.82 5.80 29.85 0.17 -0.65 16 20 C -0.11 -1.79 5.20 30.59 0.16 -1.63 16 21 C -0.12 -1.53 5.93 30.59 0.18 -1.35 16 22 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 23 N -0.49 -17.13 10.53 -179.40 -1.89 -19.02 16 24 C 0.05 1.92 6.74 41.52 0.28 2.20 16 25 C -0.07 -2.35 10.06 71.24 0.72 -1.63 16 26 H 0.23 6.74 7.80 -4.42 -0.03 6.71 16 27 H 0.10 4.37 6.34 -2.39 -0.02 4.36 16 28 H 0.10 3.29 6.67 -2.39 -0.02 3.27 16 29 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 30 H 0.12 3.51 7.41 -2.39 -0.02 3.49 16 31 H 0.11 3.84 6.14 -2.39 -0.01 3.83 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.46 6.72 -2.39 -0.02 2.44 16 43 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -70.04 375.43 5.43 -64.61 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 1.00 Total: 22.15 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 7.12 Total: -10.72 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -3.37 Total: -87.44 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.05 Total: -35.38 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.31 Total: 2.90 kcal Total: -70.04 5.43 -64.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890402642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.459 kcal (2) G-P(sol) polarization free energy of solvation -70.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds