Wall clock time and date at job start Tue Mar 31 2020 12:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.67925 * 2 1 4 4 C 1.34777 * 120.00123 * 59.68114 * 3 2 1 5 5 O 1.21756 * 119.99746 * 359.97438 * 4 3 2 6 6 C 1.46233 * 120.00196 * 179.97438 * 4 3 2 7 7 S 1.75664 * 125.22886 * 0.02588 * 6 4 3 8 8 C 1.75475 * 92.09234 * 180.02562 * 7 6 4 9 9 C 1.32759 * 111.36233 * 359.97438 * 8 7 6 10 10 C 1.39545 * 125.22605 * 179.72006 * 6 4 3 11 11 C 1.40538 * 123.71692 * 359.97438 * 10 6 4 12 12 H 1.07997 * 119.99834 * 334.96275 * 11 10 6 13 13 C 1.40313 * 119.99951 * 154.95864 * 11 10 6 14 14 N 1.30636 * 119.99673 * 162.39056 * 13 11 10 15 15 Si 1.86800 * 119.99862 * 342.39011 * 13 11 10 16 16 H 1.48503 * 109.47093 * 94.00718 * 15 13 11 17 17 H 1.48498 * 109.46972 * 214.00549 * 15 13 11 18 18 H 1.48505 * 109.47339 * 334.00596 * 15 13 11 19 19 C 1.53123 * 109.57578 * 120.32315 * 2 1 3 20 20 N 1.46946 * 109.35219 * 119.86679 * 19 2 1 21 21 C 1.46935 * 110.97181 * 297.91227 * 20 19 2 22 22 C 1.53124 * 109.35168 * 62.08850 * 21 20 19 23 23 C 1.53392 * 108.84669 * 359.93995 * 22 21 20 24 24 C 1.53379 * 108.59681 * 58.99990 * 23 22 21 25 25 C 1.46906 * 111.05498 * 61.95992 * 20 19 2 26 26 H 1.09002 * 109.47337 * 180.31795 * 1 2 3 27 27 H 1.08995 * 109.47329 * 300.31603 * 1 2 3 28 28 H 1.09004 * 109.47203 * 60.31943 * 1 2 3 29 29 H 0.97001 * 119.99958 * 239.67602 * 3 2 1 30 30 H 1.07996 * 124.31544 * 179.97438 * 8 7 6 31 31 H 1.07997 * 122.78506 * 179.97438 * 9 8 7 32 32 H 0.97006 * 119.99682 * 179.97438 * 14 13 11 33 33 H 1.08995 * 109.49272 * 359.90591 * 19 2 1 34 34 H 1.08997 * 109.49112 * 239.82765 * 19 2 1 35 35 H 1.09002 * 109.49165 * 182.05217 * 21 20 19 36 36 H 1.08994 * 109.49067 * 302.12297 * 21 20 19 37 37 H 1.09003 * 109.57652 * 240.12975 * 22 21 20 38 38 H 1.09003 * 109.57422 * 119.74861 * 22 21 20 39 39 H 1.08993 * 110.76258 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.57863 * 181.23786 * 24 23 22 41 41 H 1.09000 * 109.57673 * 60.84010 * 24 23 22 42 42 H 1.09003 * 109.48815 * 57.96876 * 25 20 19 43 43 H 1.09006 * 109.48719 * 178.00775 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0233 1.3794 0.0000 4 6 1.6954 2.2124 1.0076 5 8 0.9888 1.8185 1.9175 6 6 2.1883 3.5891 1.0079 7 16 3.2117 4.2993 -0.2308 8 6 3.2518 5.8455 0.5981 9 6 2.5427 5.8114 1.7199 10 6 1.9131 4.5424 1.9891 11 6 1.1136 4.2920 3.1175 12 1 0.3651 3.5141 3.0870 13 6 1.2880 5.0527 4.2836 14 7 0.3529 5.0737 5.1956 15 14 2.8572 6.0352 4.5318 16 1 2.6508 7.4264 4.0549 17 1 3.2067 6.0533 5.9749 18 1 3.9615 5.4070 3.7628 19 6 2.0430 -0.7284 1.2453 20 7 2.8567 -1.8811 0.8347 21 6 2.0541 -2.8457 0.0703 22 6 1.5414 -2.1783 -1.2089 23 6 2.0439 -0.7296 -1.2477 24 6 3.5772 -0.7425 -1.2099 25 6 4.0341 -1.4500 0.0691 26 1 -0.3634 -1.0277 0.0057 27 1 -0.3634 0.5187 0.8871 28 1 -0.3634 0.5089 -0.8929 29 1 2.5860 1.6932 -0.7251 30 1 3.7853 6.7140 0.2411 31 1 2.4427 6.6644 2.3747 32 1 0.4736 5.5993 6.0019 33 1 1.1968 -1.0738 1.8392 34 1 2.6514 -0.0473 1.8403 35 1 2.6705 -3.7061 -0.1903 36 1 1.2078 -3.1737 0.6737 37 1 0.4514 -2.1870 -1.2138 38 1 1.9166 -2.7184 -2.0782 39 1 1.6956 -0.2237 -2.1481 40 1 3.9513 0.2812 -1.2146 41 1 3.9594 -1.2772 -2.0795 42 1 4.6284 -0.7634 0.6720 43 1 4.6368 -2.3201 -0.1916 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892758096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:40 Heat of formation + Delta-G solvation = -3.832975 kcal Electronic energy + Delta-G solvation = -25865.459330 eV Core-core repulsion = 22422.555787 eV Total energy + Delta-G solvation = -3442.903543 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09715 -38.06323 -36.24208 -34.02221 -33.35857 -31.88507 -31.45639 -30.25128 -29.03866 -26.46272 -26.31360 -23.16383 -22.90707 -22.32876 -21.47092 -19.91683 -18.91900 -18.01385 -17.21128 -16.33762 -16.16362 -15.75715 -15.59894 -15.31840 -14.29401 -14.04714 -13.82134 -13.65629 -13.26765 -13.08991 -12.93275 -12.54766 -12.33090 -12.23205 -12.15245 -11.97876 -11.86015 -11.60258 -11.53739 -11.46057 -11.33802 -11.11176 -10.88299 -10.62401 -10.45651 -10.23683 -10.05173 -10.01852 -9.63496 -9.43264 -8.56590 -8.36813 -7.85315 -7.64750 -7.38812 -7.18767 -4.56518 1.87135 2.81051 2.85607 3.04680 3.08798 3.46263 3.49861 3.75866 4.00425 4.15076 4.38337 4.56413 4.74905 4.88946 5.10168 5.16773 5.21312 5.25406 5.27134 5.42159 5.54426 5.65194 5.73431 5.80123 5.87881 5.93417 5.96114 6.03141 6.09522 6.10885 6.18190 6.22900 6.31467 6.55493 6.63634 6.76226 6.79095 6.87470 7.10142 7.17484 7.24323 7.46206 7.64607 8.23719 8.38668 8.52491 8.78348 9.59778 9.78763 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.004438 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.478925 B = 6308.326231 C = 6963.382869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 N -0.742 5.742 4 C 0.602 3.398 5 O -0.550 6.550 6 C -0.427 4.427 7 S -0.024 6.024 8 C -0.177 4.177 9 C -0.164 4.164 10 C 0.108 3.892 11 C -0.360 4.360 12 H 0.124 0.876 13 C 0.078 3.922 14 N -0.769 5.769 15 Si 0.909 3.091 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.241 1.241 19 C 0.058 3.942 20 N -0.532 5.532 21 C 0.052 3.948 22 C -0.146 4.146 23 C -0.091 4.091 24 C -0.150 4.150 25 C 0.055 3.945 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.386 0.614 30 H 0.143 0.857 31 H 0.125 0.875 32 H 0.292 0.708 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.108 -8.035 -9.846 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.072 3.928 3 N -0.395 5.395 4 C 0.398 3.602 5 O -0.433 6.433 6 C -0.546 4.546 7 S 0.232 5.768 8 C -0.312 4.312 9 C -0.198 4.198 10 C 0.097 3.903 11 C -0.390 4.390 12 H 0.141 0.859 13 C -0.147 4.147 14 N -0.391 5.391 15 Si 0.734 3.266 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.164 1.164 19 C -0.071 4.071 20 N -0.252 5.252 21 C -0.077 4.077 22 C -0.185 4.185 23 C -0.110 4.110 24 C -0.189 4.189 25 C -0.074 4.074 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.219 0.781 30 H 0.161 0.839 31 H 0.142 0.858 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.261 -9.070 -9.798 14.351 hybrid contribution -0.023 1.871 0.227 1.885 sum 5.238 -7.199 -9.571 13.071 Atomic orbital electron populations 1.22285 0.94585 1.01233 1.03694 1.20722 0.94266 0.82734 0.95097 1.46026 1.55755 1.10930 1.26814 1.16701 0.79408 0.83340 0.80747 1.90671 1.39552 1.76680 1.36365 1.22469 1.26410 0.97551 1.08164 1.82786 1.56951 1.06292 1.30744 1.24915 1.05479 1.00452 1.00345 1.21503 1.01360 0.98800 0.98106 1.17873 0.90250 0.88322 0.93872 1.19818 1.12810 1.13227 0.93140 0.85879 1.26540 0.97854 0.94612 0.95659 1.69594 1.31695 1.30343 1.07465 0.86457 0.82790 0.79599 0.77750 1.19182 1.20846 1.16391 1.22665 0.97660 0.90961 0.95798 1.62544 1.08189 1.14541 1.39946 1.22198 0.97507 0.95096 0.92890 1.22277 1.01563 0.95219 0.99488 1.21381 0.95606 0.96061 0.97996 1.22245 0.95435 1.01827 0.99373 1.22145 0.93047 0.99222 0.92947 0.92717 0.89549 0.93334 0.78075 0.83929 0.85788 0.89692 0.90076 0.89502 0.90988 0.90709 0.91090 0.91678 0.90302 0.91370 0.91777 0.90611 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 7.78 37.15 0.29 -2.31 16 2 C 0.16 2.55 0.52 -131.55 -0.07 2.48 16 3 N -0.74 -13.69 4.73 -48.78 -0.23 -13.93 16 4 C 0.60 13.93 6.83 -13.05 -0.09 13.84 16 5 O -0.55 -14.28 11.53 5.14 0.06 -14.22 16 6 C -0.43 -10.22 6.51 -35.88 -0.23 -10.46 16 7 S -0.02 -0.48 22.25 -107.50 -2.39 -2.88 16 8 C -0.18 -3.51 11.07 28.86 0.32 -3.19 16 9 C -0.16 -3.67 7.55 -39.12 -0.30 -3.97 16 10 C 0.11 2.72 5.27 -106.21 -0.56 2.17 16 11 C -0.36 -9.80 8.99 -37.94 -0.34 -10.14 16 12 H 0.12 3.74 6.30 -52.49 -0.33 3.41 16 13 C 0.08 1.97 5.48 -17.28 -0.09 1.87 16 14 N -0.77 -19.61 13.92 55.57 0.77 -18.83 16 15 Si 0.91 19.29 24.53 -169.99 -4.17 15.12 16 16 H -0.27 -5.27 6.63 56.52 0.37 -4.89 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.24 -5.29 6.73 56.52 0.38 -4.91 16 19 C 0.06 0.98 4.58 -3.74 -0.02 0.96 16 20 N -0.53 -7.46 5.22 -234.30 -1.22 -8.68 16 21 C 0.05 0.59 6.09 -3.74 -0.02 0.57 16 22 C -0.15 -1.57 5.40 -26.46 -0.14 -1.72 16 23 C -0.09 -1.15 2.55 -90.01 -0.23 -1.38 16 24 C -0.15 -1.78 5.58 -26.46 -0.15 -1.93 16 25 C 0.05 0.69 6.10 -3.75 -0.02 0.67 16 26 H 0.05 0.76 6.42 -51.93 -0.33 0.42 16 27 H 0.09 1.71 6.15 -51.93 -0.32 1.40 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.39 6.62 6.44 -40.82 -0.26 6.35 16 30 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.12 2.63 4.55 -52.49 -0.24 2.40 16 32 H 0.29 6.60 8.29 -40.82 -0.34 6.26 16 33 H 0.08 1.42 7.60 -51.93 -0.39 1.03 16 34 H 0.09 1.75 7.07 -51.93 -0.37 1.38 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.75 6.44 -51.93 -0.33 0.42 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.87 6.89 -51.93 -0.36 0.51 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -27.92 332.28 -9.76 -37.68 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -5.93 Total: 13.26 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.66 Total: -12.53 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.68 Total: -41.44 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.06 Total: -14.22 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.17 Total: 15.12 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.39 Total: -2.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.92 -9.76 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892758096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.846 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds