Wall clock time and date at job start Tue Mar 31 2020 12:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.67925 * 2 1 4 4 C 1.34777 * 120.00123 * 59.68114 * 3 2 1 5 5 O 1.21756 * 119.99746 * 359.97438 * 4 3 2 6 6 C 1.46233 * 120.00196 * 179.97438 * 4 3 2 7 7 S 1.75664 * 125.22886 * 0.02588 * 6 4 3 8 8 C 1.75475 * 92.09234 * 180.02562 * 7 6 4 9 9 C 1.32759 * 111.36233 * 359.97438 * 8 7 6 10 10 C 1.39545 * 125.22605 * 179.72006 * 6 4 3 11 11 C 1.40538 * 123.71692 * 359.97438 * 10 6 4 12 12 H 1.07997 * 119.99834 * 334.96275 * 11 10 6 13 13 C 1.40313 * 119.99951 * 154.95864 * 11 10 6 14 14 N 1.30636 * 119.99673 * 162.39056 * 13 11 10 15 15 Si 1.86800 * 119.99862 * 342.39011 * 13 11 10 16 16 H 1.48503 * 109.47093 * 94.00718 * 15 13 11 17 17 H 1.48498 * 109.46972 * 214.00549 * 15 13 11 18 18 H 1.48505 * 109.47339 * 334.00596 * 15 13 11 19 19 C 1.53123 * 109.57578 * 120.32315 * 2 1 3 20 20 N 1.46946 * 109.35219 * 119.86679 * 19 2 1 21 21 C 1.46935 * 110.97181 * 297.91227 * 20 19 2 22 22 C 1.53124 * 109.35168 * 62.08850 * 21 20 19 23 23 C 1.53392 * 108.84669 * 359.93995 * 22 21 20 24 24 C 1.53379 * 108.59681 * 58.99990 * 23 22 21 25 25 C 1.46906 * 111.05498 * 61.95992 * 20 19 2 26 26 H 1.09002 * 109.47337 * 180.31795 * 1 2 3 27 27 H 1.08995 * 109.47329 * 300.31603 * 1 2 3 28 28 H 1.09004 * 109.47203 * 60.31943 * 1 2 3 29 29 H 0.97001 * 119.99958 * 239.67602 * 3 2 1 30 30 H 1.07996 * 124.31544 * 179.97438 * 8 7 6 31 31 H 1.07997 * 122.78506 * 179.97438 * 9 8 7 32 32 H 0.97006 * 119.99682 * 179.97438 * 14 13 11 33 33 H 1.08995 * 109.49272 * 359.90591 * 19 2 1 34 34 H 1.08997 * 109.49112 * 239.82765 * 19 2 1 35 35 H 1.09002 * 109.49165 * 182.05217 * 21 20 19 36 36 H 1.08994 * 109.49067 * 302.12297 * 21 20 19 37 37 H 1.09003 * 109.57652 * 240.12975 * 22 21 20 38 38 H 1.09003 * 109.57422 * 119.74861 * 22 21 20 39 39 H 1.08993 * 110.76258 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.57863 * 181.23786 * 24 23 22 41 41 H 1.09000 * 109.57673 * 60.84010 * 24 23 22 42 42 H 1.09003 * 109.48815 * 57.96876 * 25 20 19 43 43 H 1.09006 * 109.48719 * 178.00775 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0233 1.3794 0.0000 4 6 1.6954 2.2124 1.0076 5 8 0.9888 1.8185 1.9175 6 6 2.1883 3.5891 1.0079 7 16 3.2117 4.2993 -0.2308 8 6 3.2518 5.8455 0.5981 9 6 2.5427 5.8114 1.7199 10 6 1.9131 4.5424 1.9891 11 6 1.1136 4.2920 3.1175 12 1 0.3651 3.5141 3.0870 13 6 1.2880 5.0527 4.2836 14 7 0.3529 5.0737 5.1956 15 14 2.8572 6.0352 4.5318 16 1 2.6508 7.4264 4.0549 17 1 3.2067 6.0533 5.9749 18 1 3.9615 5.4070 3.7628 19 6 2.0430 -0.7284 1.2453 20 7 2.8567 -1.8811 0.8347 21 6 2.0541 -2.8457 0.0703 22 6 1.5414 -2.1783 -1.2089 23 6 2.0439 -0.7296 -1.2477 24 6 3.5772 -0.7425 -1.2099 25 6 4.0341 -1.4500 0.0691 26 1 -0.3634 -1.0277 0.0057 27 1 -0.3634 0.5187 0.8871 28 1 -0.3634 0.5089 -0.8929 29 1 2.5860 1.6932 -0.7251 30 1 3.7853 6.7140 0.2411 31 1 2.4427 6.6644 2.3747 32 1 0.4736 5.5993 6.0019 33 1 1.1968 -1.0738 1.8392 34 1 2.6514 -0.0473 1.8403 35 1 2.6705 -3.7061 -0.1903 36 1 1.2078 -3.1737 0.6737 37 1 0.4514 -2.1870 -1.2138 38 1 1.9166 -2.7184 -2.0782 39 1 1.6956 -0.2237 -2.1481 40 1 3.9513 0.2812 -1.2146 41 1 3.9594 -1.2772 -2.0795 42 1 4.6284 -0.7634 0.6720 43 1 4.6368 -2.3201 -0.1916 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892758096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:40 Heat of formation + Delta-G solvation = -23.859919 kcal Electronic energy + Delta-G solvation = -25866.327764 eV Core-core repulsion = 22422.555787 eV Total energy + Delta-G solvation = -3443.771977 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.30456 -39.77616 -37.98546 -35.55886 -35.20938 -33.05467 -32.64058 -31.56535 -30.75558 -28.22691 -27.65610 -24.44032 -24.02838 -23.73677 -22.96957 -21.44129 -20.74686 -19.64838 -18.39074 -17.79955 -17.59834 -17.23354 -16.94210 -16.73268 -15.94013 -15.53513 -15.40050 -15.23268 -14.92659 -14.40813 -14.11459 -14.01742 -13.84704 -13.64762 -13.47434 -13.22054 -13.17835 -13.08465 -12.97135 -12.86062 -12.65806 -12.47117 -12.37385 -12.24903 -11.83617 -11.79377 -11.38810 -11.24053 -11.19610 -11.09221 -10.21552 -10.08138 -9.48112 -9.12481 -9.04617 -9.02270 -6.50317 0.12073 1.15858 1.17431 1.33671 1.42647 1.63014 1.70724 2.04659 2.49865 2.53557 3.04820 3.19665 3.49820 3.68062 3.85339 3.97438 4.15661 4.21247 4.24871 4.27112 4.34448 4.42814 4.45316 4.57219 4.68464 4.73702 4.84333 4.86458 4.96142 4.98479 5.00293 5.06283 5.11995 5.14749 5.18124 5.22375 5.26188 5.34438 5.40467 5.79112 5.83459 6.07118 6.21866 6.24187 6.49776 6.63055 6.98445 7.80111 8.00642 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.004438 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.478925 B = 6308.326231 C = 6963.382869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 N -0.725 5.725 4 C 0.592 3.408 5 O -0.588 6.588 6 C -0.458 4.458 7 S 0.045 5.955 8 C -0.156 4.156 9 C -0.198 4.198 10 C 0.096 3.904 11 C -0.411 4.411 12 H 0.068 0.932 13 C 0.041 3.959 14 N -0.815 5.815 15 Si 0.970 3.030 16 H -0.234 1.234 17 H -0.271 1.271 18 H -0.251 1.251 19 C 0.070 3.930 20 N -0.542 5.542 21 C 0.048 3.952 22 C -0.139 4.139 23 C -0.086 4.086 24 C -0.145 4.145 25 C 0.052 3.948 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.395 0.605 30 H 0.193 0.807 31 H 0.136 0.864 32 H 0.303 0.697 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.920 -8.143 -13.409 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.067 3.933 3 N -0.378 5.378 4 C 0.388 3.612 5 O -0.472 6.472 6 C -0.577 4.577 7 S 0.303 5.697 8 C -0.291 4.291 9 C -0.231 4.231 10 C 0.084 3.916 11 C -0.441 4.441 12 H 0.086 0.914 13 C -0.179 4.179 14 N -0.439 5.439 15 Si 0.791 3.209 16 H -0.159 1.159 17 H -0.197 1.197 18 H -0.175 1.175 19 C -0.060 4.060 20 N -0.263 5.263 21 C -0.080 4.080 22 C -0.178 4.178 23 C -0.105 4.105 24 C -0.184 4.184 25 C -0.076 4.076 26 H 0.099 0.901 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.230 0.770 30 H 0.210 0.790 31 H 0.154 0.846 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.071 -9.204 -13.411 18.158 hybrid contribution -0.874 1.710 1.143 2.236 sum 7.197 -7.493 -12.267 16.076 Atomic orbital electron populations 1.22195 0.95026 1.02308 1.01633 1.20967 0.93995 0.81437 0.96942 1.45855 1.54858 1.11561 1.25526 1.16965 0.79058 0.84029 0.81176 1.90670 1.41003 1.77499 1.38039 1.23107 1.26579 0.98199 1.09833 1.82417 1.54171 1.05341 1.27765 1.25544 1.03228 1.01778 0.98548 1.21445 1.03631 0.97851 1.00188 1.18213 0.89916 0.90168 0.93263 1.19574 1.14427 1.14114 0.96016 0.91431 1.27324 1.00839 0.95224 0.94486 1.69622 1.33616 1.32181 1.08504 0.85533 0.77892 0.79388 0.78081 1.15856 1.19682 1.17463 1.22313 0.96527 0.91474 0.95659 1.62502 1.08569 1.13496 1.41708 1.22339 0.97662 0.95027 0.92927 1.22266 1.01800 0.93681 1.00102 1.21413 0.96290 0.96932 0.95872 1.22234 0.94586 1.01568 1.00014 1.22218 0.92420 1.00094 0.92842 0.90081 0.94079 0.92770 0.76996 0.78955 0.84637 0.88594 0.92026 0.93881 0.88416 0.91052 0.90838 0.88628 0.89192 0.92489 0.88539 0.92796 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 7.78 71.98 0.56 -4.59 16 2 C 0.15 4.95 0.52 3.78 0.00 4.95 16 3 N -0.73 -27.31 4.73 -426.45 -2.02 -29.33 16 4 C 0.59 29.02 6.83 86.32 0.59 29.61 16 5 O -0.59 -33.54 11.53 -4.53 -0.05 -33.59 16 6 C -0.46 -22.47 6.51 24.66 0.16 -22.31 16 7 S 0.05 1.67 22.25 -56.49 -1.26 0.41 16 8 C -0.16 -5.60 11.07 66.64 0.74 -4.87 16 9 C -0.20 -8.60 7.55 22.61 0.17 -8.42 16 10 C 0.10 5.01 5.27 -20.89 -0.11 4.90 16 11 C -0.41 -24.22 8.99 23.34 0.21 -24.01 16 12 H 0.07 4.61 6.30 -2.91 -0.02 4.59 16 13 C 0.04 2.19 5.48 85.38 0.47 2.66 16 14 N -0.82 -44.45 13.92 21.89 0.30 -44.14 16 15 Si 0.97 40.19 24.53 68.60 1.68 41.87 16 16 H -0.23 -8.46 6.63 99.48 0.66 -7.80 16 17 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 18 H -0.25 -10.69 6.73 99.48 0.67 -10.02 16 19 C 0.07 2.47 4.58 86.34 0.40 2.87 16 20 N -0.54 -14.80 5.22 -895.20 -4.67 -19.47 16 21 C 0.05 0.97 6.09 86.34 0.53 1.50 16 22 C -0.14 -2.47 5.40 30.77 0.17 -2.31 16 23 C -0.09 -1.93 2.55 -10.40 -0.03 -1.96 16 24 C -0.14 -2.98 5.58 30.77 0.17 -2.80 16 25 C 0.05 1.22 6.10 86.35 0.53 1.75 16 26 H 0.08 2.23 6.42 -2.39 -0.02 2.22 16 27 H 0.04 1.76 6.15 -2.39 -0.01 1.75 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.39 13.19 6.44 -92.71 -0.60 12.59 16 30 H 0.19 4.98 8.06 -2.91 -0.02 4.96 16 31 H 0.14 5.49 4.55 -2.91 -0.01 5.48 16 32 H 0.30 14.43 8.29 -92.70 -0.77 13.66 16 33 H 0.06 2.36 7.60 -2.39 -0.02 2.34 16 34 H 0.04 1.88 7.07 -2.39 -0.02 1.86 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.30 6.44 -2.39 -0.02 1.28 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.30 6.89 -2.39 -0.02 1.28 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -69.44 332.28 -1.10 -70.54 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.36 Total: 36.73 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.55 Total: -23.02 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -6.39 Total: -92.94 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.05 Total: -33.59 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.68 Total: 41.87 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.26 Total: 0.41 kcal Total: -69.44 -1.10 -70.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892758096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.684 kcal (2) G-P(sol) polarization free energy of solvation -69.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds