Wall clock time and date at job start Tue Mar 31 2020 12:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46820 * 2 1 4 4 C 1.52992 * 109.47309 * 120.00005 * 2 1 3 5 5 C 1.50698 * 109.46897 * 240.00327 * 2 1 3 6 6 N 1.30829 * 125.86038 * 5.97792 * 5 2 1 7 7 N 1.40072 * 108.33954 * 179.97438 * 6 5 2 8 8 C 1.46505 * 126.03144 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46998 * 89.97605 * 8 7 6 10 10 C 1.38420 * 122.54066 * 269.73043 * 9 8 7 11 11 C 1.33392 * 114.92161 * 179.76380 * 10 9 8 12 12 S 1.75877 * 109.59283 * 0.47738 * 11 10 9 13 13 C 1.33400 * 122.54196 * 90.02305 * 9 8 7 14 14 C 1.35124 * 107.92933 * 359.97438 * 7 6 5 15 15 O 1.35763 * 126.19563 * 179.97438 * 14 7 6 16 16 C 1.35955 * 107.61519 * 359.75374 * 14 7 6 17 17 C 1.50698 * 126.08385 * 180.23332 * 16 14 7 18 18 C 1.50692 * 109.47284 * 275.83641 * 17 16 14 19 19 H 1.08007 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00233 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99961 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00135 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47194 * 89.99553 * 22 20 18 24 24 H 1.48503 * 109.46872 * 209.99631 * 22 20 18 25 25 H 1.48499 * 109.47337 * 329.99440 * 22 20 18 26 26 H 1.09000 * 109.47068 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47615 * 59.99712 * 1 2 3 28 28 H 1.09003 * 109.47135 * 299.99499 * 1 2 3 29 29 H 1.08999 * 109.47348 * 64.43587 * 3 2 1 30 30 H 1.09002 * 109.47547 * 184.43740 * 3 2 1 31 31 H 1.09002 * 109.47066 * 304.43361 * 3 2 1 32 32 H 1.09000 * 109.47112 * 59.99957 * 4 2 1 33 33 H 1.09003 * 109.47003 * 180.02562 * 4 2 1 34 34 H 1.09007 * 109.47260 * 299.99825 * 4 2 1 35 35 H 1.09003 * 109.46489 * 209.97311 * 8 7 6 36 36 H 1.08994 * 109.47343 * 329.97425 * 8 7 6 37 37 H 1.08000 * 122.53790 * 0.02562 * 10 9 8 38 38 H 1.07997 * 125.20066 * 180.21069 * 11 10 9 39 39 H 1.08004 * 125.19746 * 0.02562 * 13 9 8 40 40 H 0.96702 * 113.99862 * 90.02652 * 15 14 7 41 41 H 1.09003 * 109.47156 * 35.83902 * 17 16 14 42 42 H 1.09000 * 109.47001 * 155.83273 * 17 16 14 43 43 H 0.97001 * 120.00204 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0323 -0.7103 -1.2305 6 7 1.2935 -1.1517 -2.2159 7 7 2.1341 -1.7489 -3.1638 8 6 1.7108 -2.3695 -4.4216 9 6 1.7047 -1.3334 -5.5159 10 6 0.5886 -0.5700 -5.8120 11 6 0.7534 0.3045 -6.8058 12 16 2.3902 0.1786 -7.4369 13 6 2.7725 -1.0863 -6.2762 14 6 3.4045 -1.6506 -2.7139 15 8 4.5160 -2.1095 -3.3440 16 6 3.3686 -1.0045 -1.5182 17 6 4.5571 -0.6692 -0.6545 18 6 4.9070 -1.8585 0.2022 19 1 4.3270 -2.7666 0.1284 20 6 5.9676 -1.7874 1.0804 21 7 6.6741 -0.6818 1.1700 22 14 6.4018 -3.2618 2.1419 23 1 7.3769 -4.1199 1.4222 24 1 7.0011 -2.7940 3.4175 25 1 5.1726 -4.0436 2.4299 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 1.7429 1.9329 0.9270 30 1 3.1270 1.4437 -0.0795 31 1 1.6131 1.9787 -0.8476 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7208 1.2493 34 1 1.6767 -0.2073 2.1392 35 1 2.4033 -3.1698 -4.6829 36 1 0.7081 -2.7804 -4.3047 37 1 -0.3435 -0.6715 -5.2762 38 1 -0.0040 0.9827 -7.1702 39 1 3.7259 -1.5868 -6.1921 40 1 4.9245 -1.4661 -3.9393 41 1 5.4068 -0.4154 -1.2883 42 1 4.3140 0.1799 -0.0157 43 1 7.4205 -0.6319 1.7875 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902286213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:21 Heat of formation + Delta-G solvation = 38.884235 kcal Electronic energy + Delta-G solvation = -25355.388167 eV Core-core repulsion = 21914.336981 eV Total energy + Delta-G solvation = -3441.051186 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38571 -39.32107 -38.40905 -37.23683 -35.26955 -33.69282 -31.98624 -30.40755 -28.68247 -28.01365 -27.80865 -27.30773 -24.72713 -24.22877 -22.46582 -21.55507 -19.93624 -19.64861 -18.83833 -18.37839 -18.14151 -17.31976 -16.65812 -16.44515 -15.81873 -15.63316 -15.07861 -14.60960 -14.56161 -14.50838 -14.30846 -14.05117 -13.84136 -13.75695 -13.35581 -13.21893 -12.96736 -12.91907 -12.81354 -12.74942 -12.62149 -12.45845 -12.38261 -12.05490 -11.85118 -11.68938 -11.65062 -11.49248 -11.32282 -10.87402 -10.41427 -9.90796 -9.80626 -9.42198 -8.99042 -8.05154 -6.13177 -0.04092 0.65104 0.85209 1.01661 1.28378 1.41353 1.42219 1.52501 1.90019 2.00249 2.49637 3.18397 3.24005 3.62621 3.81521 3.93132 4.06400 4.14351 4.24015 4.38927 4.44663 4.49505 4.60884 4.66524 4.78588 4.90033 4.94248 5.01981 5.03156 5.09734 5.14211 5.18568 5.32486 5.33860 5.35664 5.42513 5.45923 5.59701 5.76691 5.82626 5.84759 5.90888 6.02529 6.38824 6.79750 6.90139 6.95134 7.51142 9.01955 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.004196 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.739916 B = 6671.547629 C = 7737.036367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.017 3.983 3 C -0.134 4.134 4 C -0.146 4.146 5 C 0.089 3.911 6 N -0.289 5.289 7 N -0.378 5.378 8 C 0.190 3.810 9 C -0.134 4.134 10 C -0.132 4.132 11 C -0.214 4.214 12 S 0.120 5.880 13 C -0.204 4.204 14 C 0.238 3.762 15 O -0.465 6.465 16 C -0.223 4.223 17 C 0.106 3.894 18 C -0.494 4.494 19 H 0.036 0.964 20 C 0.013 3.987 21 N -0.927 5.927 22 Si 0.944 3.056 23 H -0.279 1.279 24 H -0.279 1.279 25 H -0.271 1.271 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.145 0.855 38 H 0.187 0.813 39 H 0.176 0.824 40 H 0.401 0.599 41 H -0.012 1.012 42 H 0.025 0.975 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.514 2.527 -14.757 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.014 3.986 3 C -0.192 4.192 4 C -0.204 4.204 5 C -0.076 4.076 6 N -0.114 5.114 7 N -0.171 5.171 8 C 0.068 3.932 9 C -0.148 4.148 10 C -0.161 4.161 11 C -0.350 4.350 12 S 0.384 5.616 13 C -0.341 4.341 14 C 0.071 3.929 15 O -0.268 6.268 16 C -0.234 4.234 17 C 0.069 3.931 18 C -0.533 4.533 19 H 0.054 0.946 20 C -0.185 4.185 21 N -0.568 5.568 22 Si 0.770 3.230 23 H -0.205 1.205 24 H -0.205 1.205 25 H -0.196 1.196 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.163 0.837 38 H 0.204 0.796 39 H 0.194 0.806 40 H 0.259 0.741 41 H 0.006 0.994 42 H 0.043 0.957 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.779 2.605 -16.163 20.768 hybrid contribution 0.982 -1.159 1.556 2.175 sum -11.797 1.446 -14.607 18.831 Atomic orbital electron populations 1.21679 0.92221 1.01699 1.02276 1.18990 0.96366 0.94332 0.88863 1.21864 1.01004 0.93869 1.02441 1.22014 1.03500 0.98842 0.96000 1.22120 0.91008 0.98606 0.95824 1.77149 1.16204 1.17399 1.00671 1.49048 1.03439 1.47178 1.17425 1.20342 1.03804 0.92438 0.76638 1.19148 0.94538 1.01907 0.99246 1.20187 0.99998 0.97127 0.98821 1.25907 1.00607 1.05661 1.02792 1.84196 1.07457 1.34705 1.35215 1.25846 1.03191 1.03690 1.01350 1.18466 0.81008 1.00207 0.93214 1.84854 1.36676 1.42700 1.62606 1.20404 0.97079 1.08033 0.97921 1.17370 0.88198 0.95782 0.91787 1.21176 1.12798 0.98792 1.20524 0.94551 1.25622 0.96309 0.98085 0.98481 1.70042 1.20463 1.27787 1.38486 0.85771 0.78362 0.80286 0.78604 1.20530 1.20476 1.19612 0.93424 0.92455 0.90563 0.90226 0.93672 0.92439 0.94450 0.91343 0.91001 0.87309 0.87077 0.83728 0.79607 0.80622 0.74145 0.99397 0.95672 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 7.96 71.98 0.57 -2.90 16 2 C 0.02 0.59 0.75 -52.93 -0.04 0.55 16 3 C -0.13 -4.42 8.36 71.98 0.60 -3.82 16 4 C -0.15 -5.61 8.25 71.98 0.59 -5.01 16 5 C 0.09 3.62 5.61 43.09 0.24 3.86 16 6 N -0.29 -10.85 11.86 -47.42 -0.56 -11.42 16 7 N -0.38 -13.06 3.60 -463.49 -1.67 -14.73 16 8 C 0.19 4.79 6.64 85.63 0.57 5.36 16 9 C -0.13 -3.04 5.38 -20.92 -0.11 -3.16 16 10 C -0.13 -2.78 9.98 21.22 0.21 -2.57 16 11 C -0.21 -3.84 11.23 66.72 0.75 -3.09 16 12 S 0.12 2.13 23.34 -56.49 -1.32 0.81 16 13 C -0.20 -4.14 10.98 66.72 0.73 -3.41 16 14 C 0.24 9.55 7.92 83.66 0.66 10.22 16 15 O -0.46 -16.80 13.53 -90.90 -1.23 -18.03 16 16 C -0.22 -10.11 5.11 -20.01 -0.10 -10.21 16 17 C 0.11 5.59 4.42 29.10 0.13 5.72 16 18 C -0.49 -28.05 7.48 25.60 0.19 -27.86 16 19 H 0.04 2.13 7.74 -2.91 -0.02 2.11 16 20 C 0.01 0.72 5.46 84.66 0.46 1.18 16 21 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 22 Si 0.94 44.99 29.54 68.60 2.03 47.02 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.04 1.75 5.64 -2.39 -0.01 1.74 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 3.20 4.19 -2.39 -0.01 3.19 16 34 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.11 2.47 8.11 -2.39 -0.02 2.45 16 36 H 0.11 2.49 8.13 -2.39 -0.02 2.47 16 37 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 38 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.40 10.62 9.06 -74.06 -0.67 9.95 16 41 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.03 1.37 4.59 -2.39 -0.01 1.36 16 43 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -68.98 367.07 3.35 -65.63 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.36 Total: 20.48 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 5.46 Total: -35.14 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.95 Total: -80.77 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -1.23 Total: -18.03 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.32 Total: 0.81 kcal Total: -68.98 3.35 -65.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902286213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.510 kcal (2) G-P(sol) polarization free energy of solvation -68.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds