Wall clock time and date at job start Tue Mar 31 2020 13:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47320 * 2 1 4 4 H 1.08992 * 109.47146 * 54.99783 * 3 2 1 5 5 C 1.53008 * 109.46920 * 294.99764 * 3 2 1 6 6 C 1.53001 * 109.47183 * 174.99919 * 3 2 1 7 7 H 1.09001 * 109.46973 * 179.97438 * 6 3 2 8 8 O 1.45207 * 109.47003 * 59.99851 * 6 3 2 9 9 C 1.34775 * 116.99678 * 149.99609 * 8 6 3 10 10 O 1.21510 * 120.00198 * 0.02562 * 9 8 6 11 11 C 1.47508 * 119.99849 * 179.97438 * 9 8 6 12 12 C 1.40063 * 119.90172 * 180.02562 * 11 9 8 13 13 C 1.36296 * 120.10398 * 180.27931 * 12 11 9 14 14 C 1.40909 * 119.89384 * 359.47804 * 13 12 11 15 15 C 1.41090 * 120.09793 * 180.25325 * 14 13 12 16 16 H 1.07995 * 120.00332 * 204.79486 * 15 14 13 17 17 C 1.40253 * 119.99825 * 24.79457 * 15 14 13 18 18 N 1.30635 * 119.99755 * 17.74055 * 17 15 14 19 19 Si 1.86802 * 119.99899 * 197.73660 * 17 15 14 20 20 H 1.48495 * 109.47080 * 60.00349 * 19 17 15 21 21 H 1.48500 * 109.46952 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46966 * 300.00272 * 19 17 15 23 23 C 1.40896 * 119.80199 * 0.50006 * 14 13 12 24 24 C 1.36298 * 119.89454 * 359.75560 * 23 14 13 25 25 C 1.50699 * 109.47020 * 299.99732 * 6 3 2 26 26 O 1.20827 * 119.99515 * 119.99865 * 25 6 3 27 27 O 1.34217 * 120.00096 * 300.00074 * 25 6 3 28 28 C 1.45203 * 116.99879 * 180.02562 * 27 25 6 29 29 H 1.09006 * 109.47046 * 59.99722 * 1 2 3 30 30 H 1.08995 * 109.47477 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47145 * 300.00258 * 1 2 3 32 32 H 1.08996 * 109.47145 * 239.99741 * 2 1 3 33 33 H 1.09000 * 109.47181 * 119.99560 * 2 1 3 34 34 H 1.08997 * 109.47324 * 300.00410 * 5 3 2 35 35 H 1.09003 * 109.47119 * 59.99932 * 5 3 2 36 36 H 1.08995 * 109.46869 * 180.02562 * 5 3 2 37 37 H 1.07998 * 119.95254 * 0.02562 * 12 11 9 38 38 H 1.08000 * 120.05485 * 179.72518 * 13 12 11 39 39 H 0.97003 * 119.99677 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.05072 * 179.72809 * 23 14 13 41 41 H 1.08005 * 119.94097 * 180.02562 * 24 23 14 42 42 H 1.09005 * 109.46900 * 179.97438 * 28 27 25 43 43 H 1.08997 * 109.47460 * 299.99757 * 28 27 25 44 44 H 1.08997 * 109.47208 * 59.99997 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5649 1.4443 0.1257 7 1 3.9283 2.4720 0.1253 8 8 4.1438 0.7262 -0.9957 9 6 5.3658 1.1178 -1.4078 10 8 5.9321 2.0339 -0.8452 11 6 6.0163 0.4336 -2.5412 12 6 7.2864 0.8419 -2.9675 13 6 7.8889 0.2163 -4.0179 14 6 7.2365 -0.8500 -4.6682 15 6 7.8584 -1.5041 -5.7526 16 1 7.2586 -2.0154 -6.4909 17 6 9.2558 -1.4904 -5.8718 18 7 9.9966 -1.1909 -4.8383 19 14 10.0577 -1.9004 -7.5084 20 1 9.6002 -0.9346 -8.5395 21 1 11.5339 -1.8163 -7.3711 22 1 9.6764 -3.2766 -7.9154 23 6 5.9590 -1.2576 -4.2357 24 6 5.3621 -0.6227 -3.1877 25 6 3.9635 0.7706 1.4135 26 8 4.6637 -0.2138 1.3886 27 8 3.5407 1.2640 2.5879 28 6 3.9640 0.5642 3.7876 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0699 1.5874 -2.1492 35 1 0.5490 2.1252 -1.3971 36 1 1.9991 3.1540 -1.3076 37 1 7.7876 1.6564 -2.4657 38 1 8.8664 0.5347 -4.3488 39 1 10.9631 -1.1817 -4.9207 40 1 5.4535 -2.0715 -4.7340 41 1 4.3830 -0.9349 -2.8552 42 1 3.5543 1.0658 4.6644 43 1 3.6033 -0.4638 3.7551 44 1 5.0525 0.5657 3.8442 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922564354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:17 Heat of formation + Delta-G solvation = -173.715161 kcal Electronic energy + Delta-G solvation = -27110.662031 eV Core-core repulsion = 23185.346221 eV Total energy + Delta-G solvation = -3925.315810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.87313 -39.45637 -37.66719 -36.81033 -36.35022 -35.04841 -33.97423 -30.81211 -30.14707 -29.56170 -28.71732 -27.04243 -26.01874 -23.93377 -22.66588 -21.44794 -21.09135 -20.24788 -19.59755 -17.74489 -17.61325 -17.27566 -16.91829 -16.31722 -15.96665 -15.44768 -14.95482 -14.68979 -14.39617 -14.02527 -13.93196 -13.59253 -13.27759 -13.17776 -12.92491 -12.69743 -12.39097 -12.23457 -12.16061 -12.04943 -11.87863 -11.70056 -11.47463 -11.28086 -11.17173 -11.05470 -10.98488 -10.86395 -10.74642 -10.65730 -10.59407 -10.17114 -9.97257 -9.60625 -9.51326 -9.39472 -7.75692 -7.65112 -7.09983 -4.68608 2.00359 2.19631 2.45516 2.87555 2.91997 2.94969 3.03115 3.31535 3.62886 3.70200 4.43886 4.46151 4.56791 4.75137 4.93285 5.00521 5.08310 5.19125 5.33744 5.36795 5.41662 5.46312 5.51315 5.55596 5.76904 5.82182 5.93919 5.98228 6.02722 6.18266 6.24395 6.25281 6.30957 6.35656 6.73526 6.79673 6.88664 7.04026 7.06525 7.40175 7.59702 7.72221 7.78052 7.85845 7.99924 8.34930 8.55398 8.64704 8.69400 9.81238 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.002956 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.178616 B = 9469.124336 C =10100.888330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.078 4.078 4 H 0.097 0.903 5 C -0.150 4.150 6 C 0.103 3.897 7 H 0.119 0.881 8 O -0.325 6.325 9 C 0.516 3.484 10 O -0.549 6.549 11 C -0.271 4.271 12 C -0.031 4.031 13 C -0.184 4.184 14 C 0.132 3.868 15 C -0.434 4.434 16 H 0.087 0.913 17 C 0.072 3.928 18 N -0.762 5.762 19 Si 0.917 3.083 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.261 1.261 23 C -0.239 4.239 24 C -0.025 4.025 25 C 0.448 3.552 26 O -0.485 6.485 27 O -0.359 6.359 28 C 0.035 3.965 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.290 0.710 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.048 3.639 8.325 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.096 4.096 4 H 0.115 0.885 5 C -0.207 4.207 6 C 0.046 3.954 7 H 0.136 0.864 8 O -0.242 6.242 9 C 0.368 3.632 10 O -0.442 6.442 11 C -0.274 4.274 12 C -0.050 4.050 13 C -0.203 4.203 14 C 0.129 3.871 15 C -0.461 4.461 16 H 0.105 0.895 17 C -0.151 4.151 18 N -0.385 5.385 19 Si 0.740 3.260 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.259 4.259 24 C -0.043 4.043 25 C 0.289 3.711 26 O -0.370 6.370 27 O -0.276 6.276 28 C -0.059 4.059 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.141 0.859 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.418 3.590 8.612 15.533 hybrid contribution 0.759 -0.329 -0.182 0.847 sum -11.659 3.261 8.430 14.752 Atomic orbital electron populations 1.21801 0.95376 1.01726 1.01825 1.21603 0.96100 0.95293 1.03062 1.21319 0.89162 0.98385 1.00757 0.88466 1.21871 1.01663 1.00427 0.96708 1.22051 0.95261 0.97118 0.80992 0.86398 1.86786 1.34285 1.59120 1.44004 1.21741 0.77840 0.80825 0.82756 1.90697 1.64172 1.31254 1.58105 1.18135 0.98817 1.07477 1.02960 1.20446 0.92154 0.97256 0.95180 1.20973 1.01662 0.98338 0.99370 1.17843 0.90602 0.88761 0.89907 1.19908 0.91453 1.27327 1.07379 0.89452 1.26179 0.97864 0.92705 0.98304 1.69738 1.07726 1.30796 1.30208 0.86208 0.78043 0.80365 0.81396 1.18337 1.19940 1.18558 1.20706 0.99029 1.04254 1.01881 1.20531 0.97098 0.92827 0.93894 1.24134 0.77588 0.83313 0.86062 1.90725 1.33949 1.24938 1.87383 1.86472 1.69938 1.55995 1.15179 1.23262 1.01129 0.97509 0.83974 0.92177 0.92693 0.92894 0.90253 0.92579 0.91135 0.91601 0.92392 0.88066 0.85914 0.89871 0.88178 0.87967 0.88048 0.91898 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 37.16 0.36 -0.98 16 2 C -0.12 -1.43 5.04 -26.73 -0.13 -1.57 16 3 C -0.08 -0.90 2.22 -90.61 -0.20 -1.10 16 4 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 5 C -0.15 -1.59 8.81 37.16 0.33 -1.27 16 6 C 0.10 1.62 2.20 -27.88 -0.06 1.56 16 7 H 0.12 1.84 7.16 -51.93 -0.37 1.47 16 8 O -0.32 -6.22 7.41 -47.39 -0.35 -6.57 16 9 C 0.52 11.65 7.82 34.51 0.27 11.92 16 10 O -0.55 -13.17 15.58 -19.27 -0.30 -13.47 16 11 C -0.27 -6.51 5.89 -104.75 -0.62 -7.12 16 12 C -0.03 -0.78 9.52 -39.60 -0.38 -1.16 16 13 C -0.18 -4.70 8.63 -39.27 -0.34 -5.04 16 14 C 0.13 3.37 5.57 -106.80 -0.60 2.77 16 15 C -0.43 -10.64 9.04 -37.74 -0.34 -10.98 16 16 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 17 C 0.07 1.67 5.14 -17.30 -0.09 1.58 16 18 N -0.76 -18.43 10.95 55.56 0.61 -17.82 16 19 Si 0.92 17.06 29.60 -169.99 -5.03 12.03 16 20 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 21 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 22 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 23 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 24 C -0.02 -0.56 9.54 -39.60 -0.38 -0.94 16 25 C 0.45 7.46 5.96 36.00 0.21 7.68 16 26 O -0.48 -9.83 16.22 -25.41 -0.41 -10.24 16 27 O -0.36 -4.83 10.47 -39.22 -0.41 -5.24 16 28 C 0.03 0.36 10.56 101.05 1.07 1.43 16 29 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.04 7.83 -51.93 -0.41 0.64 16 33 H 0.06 0.71 7.05 -51.93 -0.37 0.34 16 34 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 35 H 0.07 0.56 6.57 -51.93 -0.34 0.22 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 38 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 39 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 40 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.10 2.07 7.59 -52.48 -0.40 1.68 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 44 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -29.88 372.32 -7.84 -37.72 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.28 Total: 7.24 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.28 Total: -9.25 kcal Atomic # 7 Polarization: -18.43 SS G_CDS: 0.61 Total: -17.82 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -1.47 Total: -35.53 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.88 -7.84 -37.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922564354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.997 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds