Wall clock time and date at job start Tue Mar 31 2020 12:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47459 * 2 1 4 4 C 1.53004 * 109.47030 * 120.00550 * 2 1 3 5 5 C 1.50703 * 112.99463 * 297.92703 * 4 2 1 6 6 O 1.20827 * 120.00241 * 6.20081 * 5 4 2 7 7 O 1.34226 * 119.99674 * 186.19995 * 5 4 2 8 8 C 1.45199 * 117.00039 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47419 * 179.97438 * 8 7 5 10 10 C 1.38300 * 119.92730 * 90.00056 * 9 8 7 11 11 C 1.38105 * 120.06827 * 180.02562 * 10 9 8 12 12 C 1.38881 * 119.93044 * 359.97138 * 11 10 9 13 13 O 1.35750 * 120.06733 * 180.02562 * 12 11 10 14 14 C 1.34832 * 117.00180 * 354.57711 * 13 12 11 15 15 H 1.07997 * 119.99725 * 5.07934 * 14 13 12 16 16 C 1.38657 * 119.99986 * 185.08235 * 14 13 12 17 17 N 1.31558 * 119.99501 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99876 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46936 * 90.00119 * 18 16 14 20 20 H 1.48493 * 109.47147 * 209.99728 * 18 16 14 21 21 H 1.48500 * 109.46931 * 329.99884 * 18 16 14 22 22 C 1.38874 * 119.85854 * 0.28142 * 12 11 10 23 23 C 1.38098 * 119.93425 * 359.48784 * 22 12 11 24 24 C 1.54028 * 113.82196 * 69.75441 * 4 2 1 25 25 O 1.44446 * 85.42628 * 91.80936 * 24 4 2 26 26 C 1.44181 * 93.37924 * 24.08907 * 25 24 4 27 27 H 1.09008 * 109.46571 * 305.32118 * 1 2 3 28 28 H 1.08997 * 109.47237 * 65.32261 * 1 2 3 29 29 H 1.08995 * 109.47567 * 185.32524 * 1 2 3 30 30 H 1.09002 * 109.46714 * 240.00056 * 2 1 3 31 31 H 1.09002 * 109.46997 * 300.00181 * 3 2 1 32 32 H 1.09002 * 109.47112 * 60.00300 * 3 2 1 33 33 H 1.08997 * 109.47417 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47177 * 59.99987 * 8 7 5 35 35 H 1.08995 * 109.47354 * 299.99751 * 8 7 5 36 36 H 1.07998 * 119.96795 * 359.97438 * 10 9 8 37 37 H 1.07996 * 120.03477 * 179.97438 * 11 10 9 38 38 H 0.97009 * 119.99400 * 180.02562 * 17 16 14 39 39 H 1.08007 * 120.03020 * 179.72462 * 22 12 11 40 40 H 1.08004 * 119.96714 * 180.22989 * 23 22 12 41 41 H 1.08997 * 113.86885 * 205.91120 * 24 4 2 42 42 H 1.09004 * 113.86253 * 337.62112 * 24 4 2 43 43 H 1.09000 * 113.86337 * 221.76947 * 26 25 24 44 44 H 1.08993 * 113.86333 * 90.05916 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6237 -0.0458 2.5304 6 8 0.8640 0.8932 2.4990 7 8 2.0968 -0.4873 3.7063 8 6 1.6528 0.2108 4.8995 9 6 2.2821 -0.4207 6.1146 10 6 3.5008 0.0400 6.5785 11 6 4.0804 -0.5369 7.6914 12 6 3.4379 -1.5803 8.3451 13 8 4.0049 -2.1490 9.4396 14 6 5.2427 -1.7321 9.7743 15 1 5.7046 -0.9211 9.2309 16 6 5.9224 -2.3446 10.8161 17 7 5.3598 -3.3328 11.4776 18 14 7.6370 -1.7665 11.2802 19 1 7.5380 -0.6954 12.3040 20 1 8.4119 -2.9073 11.8309 21 1 8.3241 -1.2372 10.0748 22 6 2.2167 -2.0440 7.8736 23 6 1.6400 -1.4598 6.7631 24 6 1.7877 -2.2408 1.2368 25 8 3.0994 -2.3370 0.6397 26 6 3.5371 -1.0796 1.1930 27 1 -0.3633 0.5942 0.8386 28 1 -0.3633 0.4290 -0.9338 29 1 -0.3634 -1.0231 0.0954 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 0.5676 0.1441 4.9768 35 1 1.9491 1.2580 4.8393 36 1 4.0002 0.8511 6.0695 37 1 5.0323 -0.1771 8.0530 38 1 5.8353 -3.7611 12.2067 39 1 1.7167 -2.8582 8.3772 40 1 0.6885 -1.8176 6.3981 41 1 1.7216 -2.6851 2.2299 42 1 0.9771 -2.5478 0.5757 43 1 4.1111 -0.4676 0.4973 44 1 4.0063 -1.1685 2.1727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924206130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:51 Heat of formation + Delta-G solvation = -102.672226 kcal Electronic energy + Delta-G solvation = -26643.967342 eV Core-core repulsion = 22721.732185 eV Total energy + Delta-G solvation = -3922.235157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74949 -39.75424 -39.06508 -37.21612 -36.29343 -34.86186 -32.47863 -30.85499 -30.29799 -29.53673 -28.05065 -26.28220 -26.14777 -24.98883 -23.09561 -22.30326 -22.10140 -20.64237 -19.55414 -18.11871 -17.61465 -17.27192 -16.86747 -16.68601 -16.35495 -15.67426 -15.11055 -14.68337 -14.59352 -14.36191 -14.04540 -13.85830 -13.77660 -13.75030 -13.37472 -13.10284 -12.82311 -12.52442 -12.42238 -12.21985 -12.13168 -11.81664 -11.68641 -11.56029 -11.39237 -11.27256 -11.01969 -10.95273 -10.85877 -10.74544 -10.52341 -10.47831 -10.00936 -9.89997 -9.44906 -8.93700 -8.31257 -7.37351 -6.55387 -4.14087 1.87502 1.96113 2.11312 2.79926 3.07738 3.08914 3.13513 3.27471 3.80279 3.88662 4.08403 4.40706 4.61571 4.70413 4.94262 4.96498 5.02331 5.08625 5.10398 5.12740 5.13588 5.17041 5.19552 5.44593 5.48463 5.53545 5.56159 5.60014 5.65298 5.68299 5.72051 5.74271 5.80883 6.05121 6.07513 6.09756 6.28900 6.52330 6.55636 6.76529 6.93106 7.10817 7.22438 7.31962 7.66867 7.70472 7.89257 8.89797 9.57205 10.61967 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.002479 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.106431 B =11291.799977 C =11565.949267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.058 4.058 3 C -0.159 4.159 4 C -0.127 4.127 5 C 0.466 3.534 6 O -0.501 6.501 7 O -0.348 6.348 8 C 0.130 3.870 9 C -0.206 4.206 10 C -0.044 4.044 11 C -0.238 4.238 12 C 0.163 3.837 13 O -0.171 6.171 14 C -0.394 4.394 15 H 0.094 0.906 16 C 0.041 3.959 17 N -0.858 5.858 18 Si 0.943 3.057 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.196 4.196 23 C -0.048 4.048 24 C 0.058 3.942 25 O -0.371 6.371 26 C 0.057 3.943 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.272 0.728 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 6.190 -20.102 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.077 4.077 3 C -0.216 4.216 4 C -0.128 4.128 5 C 0.309 3.691 6 O -0.389 6.389 7 O -0.265 6.265 8 C 0.058 3.942 9 C -0.207 4.207 10 C -0.063 4.063 11 C -0.257 4.257 12 C 0.108 3.892 13 O -0.073 6.073 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.164 4.164 17 N -0.492 5.492 18 Si 0.767 3.233 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.215 4.215 23 C -0.067 4.067 24 C -0.019 4.019 25 O -0.290 6.290 26 C -0.020 4.020 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.449 5.943 -19.846 21.697 hybrid contribution 0.726 0.563 0.459 1.027 sum -5.723 6.506 -19.386 21.234 Atomic orbital electron populations 1.22006 0.94057 1.02149 1.03311 1.20774 0.96844 0.96270 0.93787 1.21996 1.00634 0.95414 1.03514 1.24006 0.99255 0.97434 0.92146 1.23326 0.78150 0.81904 0.85738 1.90561 1.33361 1.27358 1.87639 1.86637 1.66545 1.58339 1.14989 1.21723 0.98352 0.94755 0.79354 1.18845 0.99122 1.04128 0.98623 1.20610 0.93266 0.97524 0.94877 1.21143 1.03217 1.01339 0.99993 1.19437 0.92218 0.90930 0.86566 1.83978 1.30550 1.56931 1.35869 1.21374 0.89787 1.18420 1.17398 0.88854 1.25334 0.99933 0.95578 0.95604 1.70041 1.37887 1.21164 1.20117 0.85682 0.79980 0.78429 0.79203 1.19777 1.20142 1.19080 1.20198 0.96606 1.04487 1.00199 1.20497 0.98153 0.93825 0.94194 1.24079 0.87356 0.90256 1.00170 1.89763 1.28299 1.41471 1.69425 1.24066 0.92687 0.84562 1.00708 0.90235 0.92328 0.92968 0.89424 0.92152 0.90589 0.92918 0.91161 0.91194 0.87370 0.85259 0.91823 0.86195 0.86935 0.88548 0.88107 0.88257 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.83 37.16 0.33 -1.01 16 2 C -0.06 -0.50 2.29 -90.62 -0.21 -0.71 16 3 C -0.16 -1.36 8.84 37.15 0.33 -1.03 16 4 C -0.13 -1.26 0.53 -154.58 -0.08 -1.34 16 5 C 0.47 5.72 6.66 36.01 0.24 5.96 16 6 O -0.50 -6.85 11.90 -18.75 -0.22 -7.07 16 7 O -0.35 -4.78 9.47 -39.25 -0.37 -5.15 16 8 C 0.13 1.83 5.59 36.01 0.20 2.03 16 9 C -0.21 -3.44 5.52 -104.58 -0.58 -4.01 16 10 C -0.04 -0.79 9.69 -39.61 -0.38 -1.17 16 11 C -0.24 -4.97 9.17 -39.39 -0.36 -5.33 16 12 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 13 O -0.17 -4.74 9.76 0.04 0.00 -4.74 16 14 C -0.39 -10.69 9.49 30.89 0.29 -10.39 16 15 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 16 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 17 N -0.86 -24.56 13.67 55.48 0.76 -23.80 16 18 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 C -0.20 -3.98 9.99 -39.40 -0.39 -4.37 16 23 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 24 C 0.06 0.55 8.13 37.64 0.31 0.86 16 25 O -0.37 -4.16 12.38 -35.23 -0.44 -4.60 16 26 C 0.06 0.55 8.15 37.64 0.31 0.86 16 27 H 0.08 0.84 5.95 -51.92 -0.31 0.53 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.40 6.96 -51.93 -0.36 0.04 16 30 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.81 5.88 -51.93 -0.31 0.50 16 33 H 0.05 0.41 7.38 -51.93 -0.38 0.03 16 34 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 40 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.10 0.94 7.98 -51.93 -0.41 0.53 16 42 H 0.10 0.76 7.08 -51.93 -0.37 0.39 16 43 H 0.10 0.78 7.41 -51.93 -0.38 0.39 16 44 H 0.10 1.03 7.65 -51.93 -0.40 0.63 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -30.39 362.92 -6.57 -36.96 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.00 Total: 4.34 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -0.74 Total: -16.33 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.76 Total: -23.80 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.03 Total: -21.55 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.39 -6.57 -36.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924206130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.713 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds