Wall clock time and date at job start Tue Mar 31 2020 12:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47459 * 2 1 4 4 C 1.53004 * 109.47030 * 120.00550 * 2 1 3 5 5 C 1.50703 * 112.99463 * 297.92703 * 4 2 1 6 6 O 1.20827 * 120.00241 * 6.20081 * 5 4 2 7 7 O 1.34226 * 119.99674 * 186.19995 * 5 4 2 8 8 C 1.45199 * 117.00039 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47419 * 179.97438 * 8 7 5 10 10 C 1.38300 * 119.92730 * 90.00056 * 9 8 7 11 11 C 1.38105 * 120.06827 * 180.02562 * 10 9 8 12 12 C 1.38881 * 119.93044 * 359.97138 * 11 10 9 13 13 O 1.35750 * 120.06733 * 180.02562 * 12 11 10 14 14 C 1.34832 * 117.00180 * 354.57711 * 13 12 11 15 15 H 1.07997 * 119.99725 * 5.07934 * 14 13 12 16 16 C 1.38657 * 119.99986 * 185.08235 * 14 13 12 17 17 N 1.31558 * 119.99501 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99876 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46936 * 90.00119 * 18 16 14 20 20 H 1.48493 * 109.47147 * 209.99728 * 18 16 14 21 21 H 1.48500 * 109.46931 * 329.99884 * 18 16 14 22 22 C 1.38874 * 119.85854 * 0.28142 * 12 11 10 23 23 C 1.38098 * 119.93425 * 359.48784 * 22 12 11 24 24 C 1.54028 * 113.82196 * 69.75441 * 4 2 1 25 25 O 1.44446 * 85.42628 * 91.80936 * 24 4 2 26 26 C 1.44181 * 93.37924 * 24.08907 * 25 24 4 27 27 H 1.09008 * 109.46571 * 305.32118 * 1 2 3 28 28 H 1.08997 * 109.47237 * 65.32261 * 1 2 3 29 29 H 1.08995 * 109.47567 * 185.32524 * 1 2 3 30 30 H 1.09002 * 109.46714 * 240.00056 * 2 1 3 31 31 H 1.09002 * 109.46997 * 300.00181 * 3 2 1 32 32 H 1.09002 * 109.47112 * 60.00300 * 3 2 1 33 33 H 1.08997 * 109.47417 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47177 * 59.99987 * 8 7 5 35 35 H 1.08995 * 109.47354 * 299.99751 * 8 7 5 36 36 H 1.07998 * 119.96795 * 359.97438 * 10 9 8 37 37 H 1.07996 * 120.03477 * 179.97438 * 11 10 9 38 38 H 0.97009 * 119.99400 * 180.02562 * 17 16 14 39 39 H 1.08007 * 120.03020 * 179.72462 * 22 12 11 40 40 H 1.08004 * 119.96714 * 180.22989 * 23 22 12 41 41 H 1.08997 * 113.86885 * 205.91120 * 24 4 2 42 42 H 1.09004 * 113.86253 * 337.62112 * 24 4 2 43 43 H 1.09000 * 113.86337 * 221.76947 * 26 25 24 44 44 H 1.08993 * 113.86333 * 90.05916 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6237 -0.0458 2.5304 6 8 0.8640 0.8932 2.4990 7 8 2.0968 -0.4873 3.7063 8 6 1.6528 0.2108 4.8995 9 6 2.2821 -0.4207 6.1146 10 6 3.5008 0.0400 6.5785 11 6 4.0804 -0.5369 7.6914 12 6 3.4379 -1.5803 8.3451 13 8 4.0049 -2.1490 9.4396 14 6 5.2427 -1.7321 9.7743 15 1 5.7046 -0.9211 9.2309 16 6 5.9224 -2.3446 10.8161 17 7 5.3598 -3.3328 11.4776 18 14 7.6370 -1.7665 11.2802 19 1 7.5380 -0.6954 12.3040 20 1 8.4119 -2.9073 11.8309 21 1 8.3241 -1.2372 10.0748 22 6 2.2167 -2.0440 7.8736 23 6 1.6400 -1.4598 6.7631 24 6 1.7877 -2.2408 1.2368 25 8 3.0994 -2.3370 0.6397 26 6 3.5371 -1.0796 1.1930 27 1 -0.3633 0.5942 0.8386 28 1 -0.3633 0.4290 -0.9338 29 1 -0.3634 -1.0231 0.0954 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 0.5676 0.1441 4.9768 35 1 1.9491 1.2580 4.8393 36 1 4.0002 0.8511 6.0695 37 1 5.0323 -0.1771 8.0530 38 1 5.8353 -3.7611 12.2067 39 1 1.7167 -2.8582 8.3772 40 1 0.6885 -1.8176 6.3981 41 1 1.7216 -2.6851 2.2299 42 1 0.9771 -2.5478 0.5757 43 1 4.1111 -0.4676 0.4973 44 1 4.0063 -1.1685 2.1727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924206130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:50 Heat of formation + Delta-G solvation = -120.156444 kcal Electronic energy + Delta-G solvation = -26644.725514 eV Core-core repulsion = 22721.732185 eV Total energy + Delta-G solvation = -3922.993330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.60256 -40.96480 -40.49898 -38.61570 -37.57989 -35.64107 -34.37864 -32.26242 -31.85180 -30.46252 -28.73093 -27.81384 -26.98245 -26.57118 -24.02261 -23.70298 -23.10793 -22.14684 -20.45984 -19.90729 -18.93630 -18.48196 -17.93359 -17.69198 -17.11898 -16.68515 -16.49972 -16.22825 -16.11299 -15.57868 -15.33853 -15.15061 -14.84277 -14.62856 -14.52279 -14.36745 -14.29085 -13.90601 -13.55003 -13.19635 -13.15228 -13.02089 -12.83570 -12.63476 -12.51386 -12.40699 -12.28592 -12.17870 -12.12251 -11.97598 -11.66901 -11.58848 -11.21418 -10.91208 -10.80273 -10.70134 -9.85353 -9.06982 -8.49966 -6.18435 0.41521 0.54341 1.01261 1.35518 1.43038 1.52841 1.72146 2.16300 2.51065 2.80557 3.03461 3.12323 3.35682 3.44914 3.72308 3.86710 3.90584 3.95386 4.12839 4.23801 4.27426 4.29755 4.35072 4.43625 4.46055 4.48824 4.53468 4.72774 4.79718 4.83004 4.84689 4.97691 4.98188 5.00133 5.02339 5.10918 5.16495 5.21009 5.25953 5.39223 5.47711 5.64504 5.65418 5.67280 5.99162 6.10856 6.70586 6.94610 7.72530 8.72743 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.002479 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.106431 B =11291.799977 C =11565.949267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.056 4.056 3 C -0.157 4.157 4 C -0.122 4.122 5 C 0.468 3.532 6 O -0.513 6.513 7 O -0.357 6.357 8 C 0.132 3.868 9 C -0.181 4.181 10 C -0.043 4.043 11 C -0.245 4.245 12 C 0.126 3.874 13 O -0.226 6.226 14 C -0.415 4.415 15 H 0.104 0.896 16 C -0.021 4.021 17 N -0.918 5.918 18 Si 1.019 2.981 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.252 1.252 22 C -0.206 4.206 23 C -0.041 4.041 24 C 0.057 3.943 25 O -0.388 6.388 26 C 0.055 3.945 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.274 0.726 39 H 0.119 0.881 40 H 0.150 0.850 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 7.754 -23.308 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.074 4.074 3 C -0.214 4.214 4 C -0.123 4.123 5 C 0.312 3.688 6 O -0.401 6.401 7 O -0.274 6.274 8 C 0.059 3.941 9 C -0.182 4.182 10 C -0.061 4.061 11 C -0.264 4.264 12 C 0.075 3.925 13 O -0.132 6.132 14 C -0.491 4.491 15 H 0.122 0.878 16 C -0.219 4.219 17 N -0.556 5.556 18 Si 0.838 3.162 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.176 1.176 22 C -0.225 4.225 23 C -0.059 4.059 24 C -0.019 4.019 25 O -0.307 6.307 26 C -0.021 4.021 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.159 0.841 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.167 0.833 41 H 0.109 0.891 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.785 7.539 -23.109 25.237 hybrid contribution 0.549 0.200 1.107 1.252 sum -6.236 7.739 -22.002 24.142 Atomic orbital electron populations 1.21983 0.93961 1.02364 1.03066 1.20831 0.96898 0.96217 0.93503 1.21976 1.01154 0.95284 1.03017 1.24109 0.99416 0.97506 0.91273 1.23771 0.77653 0.81685 0.85727 1.90577 1.33922 1.27969 1.87673 1.86605 1.66921 1.58493 1.15344 1.21660 0.98931 0.94987 0.78498 1.19245 0.97935 1.02269 0.98779 1.20960 0.93620 0.97870 0.93638 1.21249 1.03217 1.01077 1.00904 1.19996 0.93536 0.92189 0.86816 1.83950 1.31396 1.59312 1.38572 1.21853 0.90283 1.18999 1.17996 0.87848 1.26604 1.04424 0.95582 0.95282 1.70183 1.40169 1.23574 1.21632 0.84585 0.74216 0.78108 0.79324 1.18765 1.19637 1.17557 1.20453 0.95959 1.04905 1.01223 1.20897 0.99247 0.93195 0.92559 1.24213 0.87414 0.89827 1.00467 1.89755 1.29118 1.42135 1.69650 1.24161 0.92773 0.84314 1.00869 0.92365 0.91057 0.92149 0.87990 0.90962 0.92744 0.92119 0.89658 0.89913 0.84085 0.85869 0.91727 0.86340 0.83264 0.89084 0.86000 0.86254 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.83 71.98 0.64 -1.59 16 2 C -0.06 -0.80 2.29 -10.79 -0.02 -0.82 16 3 C -0.16 -2.28 8.84 71.98 0.64 -1.64 16 4 C -0.12 -2.07 0.53 -52.23 -0.03 -2.10 16 5 C 0.47 10.21 6.66 71.24 0.47 10.69 16 6 O -0.51 -12.71 11.90 21.96 0.26 -12.45 16 7 O -0.36 -8.68 9.47 -51.38 -0.49 -9.17 16 8 C 0.13 3.21 5.59 71.24 0.40 3.60 16 9 C -0.18 -5.52 5.52 -19.83 -0.11 -5.63 16 10 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 11 C -0.25 -10.31 9.17 22.39 0.21 -10.10 16 12 C 0.13 6.09 6.65 22.58 0.15 6.24 16 13 O -0.23 -13.34 9.76 -22.76 -0.22 -13.56 16 14 C -0.42 -23.68 9.49 67.92 0.64 -23.04 16 15 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 16 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 17 N -0.92 -55.52 13.67 21.61 0.30 -55.23 16 18 Si 1.02 41.97 29.55 68.60 2.03 44.00 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 22 C -0.21 -8.47 9.99 22.39 0.22 -8.24 16 23 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 24 C 0.06 0.94 8.13 72.29 0.59 1.53 16 25 O -0.39 -7.75 12.38 -148.98 -1.84 -9.59 16 26 C 0.06 0.94 8.15 72.30 0.59 1.53 16 27 H 0.06 1.10 5.95 -2.38 -0.01 1.08 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.74 6.96 -2.39 -0.02 0.72 16 30 H 0.10 1.22 8.09 -2.39 -0.02 1.20 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 1.04 5.88 -2.39 -0.01 1.03 16 33 H 0.06 0.76 7.38 -2.39 -0.02 0.75 16 34 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 35 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 36 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 37 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 38 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 39 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 40 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 41 H 0.09 1.58 7.98 -2.39 -0.02 1.56 16 42 H 0.12 1.45 7.08 -2.38 -0.02 1.43 16 43 H 0.12 1.51 7.41 -2.39 -0.02 1.49 16 44 H 0.09 1.69 7.65 -2.39 -0.02 1.67 16 Total: -1.00 -70.06 362.92 6.33 -63.73 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 1.02 Total: 24.87 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 5.28 Total: -32.60 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.30 Total: -55.23 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -2.29 Total: -44.77 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -70.06 6.33 -63.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924206130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.426 kcal (2) G-P(sol) polarization free energy of solvation -70.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds