Wall clock time and date at job start Tue Mar 31 2020 12:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.43116 * 2 1 4 4 O 1.20833 * 119.99655 * 239.99672 * 3 2 1 5 5 O 1.34222 * 120.00432 * 60.27939 * 3 2 1 6 6 C 1.45201 * 117.00137 * 179.71953 * 5 3 2 7 7 C 1.53006 * 109.46884 * 179.97438 * 6 5 3 8 8 O 1.42898 * 109.47206 * 65.00487 * 7 6 5 9 9 C 1.42898 * 113.99948 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46993 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00339 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99872 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99648 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00290 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47175 * 89.99549 * 14 12 10 16 16 H 1.48488 * 109.47341 * 210.00161 * 14 12 10 17 17 H 1.48508 * 109.46844 * 330.00195 * 14 12 10 18 18 C 1.53071 * 109.43458 * 240.08721 * 2 1 3 19 19 C 1.53388 * 108.31140 * 288.21311 * 18 2 1 20 20 O 1.42830 * 108.33783 * 295.22647 * 19 18 2 21 21 C 1.35847 * 117.85069 * 49.21912 * 20 19 18 22 22 C 1.39155 * 118.49232 * 163.02798 * 21 20 19 23 23 C 1.37966 * 120.21610 * 179.56299 * 22 21 20 24 24 C 1.38288 * 119.95395 * 0.03036 * 23 22 21 25 25 C 1.38106 * 119.98990 * 0.07617 * 24 23 22 26 26 C 1.38363 * 121.81072 * 342.74143 * 21 20 19 27 27 H 1.08997 * 109.47234 * 59.99768 * 1 2 3 28 28 H 1.09003 * 109.46893 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46768 * 299.99869 * 1 2 3 30 30 H 1.08997 * 109.47380 * 299.99656 * 6 5 3 31 31 H 1.08997 * 109.47403 * 60.00337 * 6 5 3 32 32 H 1.09007 * 109.46990 * 185.00264 * 7 6 5 33 33 H 1.09004 * 109.47486 * 304.99771 * 7 6 5 34 34 H 1.09001 * 109.46855 * 299.99481 * 9 8 7 35 35 H 1.09001 * 109.47288 * 59.99617 * 9 8 7 36 36 H 0.97001 * 119.99579 * 179.97438 * 13 12 10 37 37 H 1.09006 * 109.69649 * 47.86830 * 18 2 1 38 38 H 1.08994 * 109.69756 * 168.46603 * 18 2 1 39 39 H 1.08997 * 109.69145 * 175.52634 * 19 18 2 40 40 H 1.09001 * 109.74593 * 54.96042 * 19 18 2 41 41 H 1.07999 * 119.88793 * 359.55776 * 22 21 20 42 42 H 1.07997 * 120.02102 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.00246 * 180.08758 * 24 23 22 44 44 H 1.07998 * 119.84483 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0314 1.4211 0.0000 4 8 2.7259 1.8167 -0.9062 5 8 1.7113 2.2458 1.0094 6 6 2.2344 3.5988 0.9465 7 6 1.7666 4.3840 2.1736 8 8 2.3385 3.8121 3.3516 9 6 1.9626 4.4744 4.5607 10 6 2.6189 3.7911 5.7327 11 1 3.2594 2.9368 5.5704 12 6 2.4025 4.2573 7.0121 13 7 2.9757 3.6613 8.0348 14 14 1.2953 5.7353 7.2930 15 1 -0.1029 5.2760 7.4905 16 1 1.7496 6.4719 8.4996 17 1 1.3592 6.6331 6.1117 18 6 2.0394 -0.7198 -1.2512 19 6 1.7705 -2.2210 -1.0866 20 8 2.5544 -2.7006 0.0068 21 6 2.5069 -2.0072 1.1740 22 6 2.9571 -2.6293 2.3345 23 6 2.9334 -1.9549 3.5379 24 6 2.4604 -0.6566 3.5925 25 6 2.0107 -0.0367 2.4432 26 6 2.0318 -0.7090 1.2324 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.3237 3.5668 0.9289 31 1 1.8705 4.0874 0.0427 32 1 2.0842 5.4228 2.0830 33 1 0.6794 4.3411 2.2398 34 1 2.2840 5.5151 4.5199 35 1 0.8795 4.4328 4.6762 36 1 2.8237 3.9895 8.9349 37 1 1.5124 -0.3471 -2.1296 38 1 3.1098 -0.5479 -1.3638 39 1 2.0524 -2.7468 -1.9988 40 1 0.7129 -2.3852 -0.8800 41 1 3.3261 -3.6435 2.2930 42 1 3.2839 -2.4406 4.4365 43 1 2.4428 -0.1274 4.5338 44 1 1.6414 0.9771 2.4886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924416735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:31 Heat of formation + Delta-G solvation = -144.313336 kcal Electronic energy + Delta-G solvation = -27739.654298 eV Core-core repulsion = 23815.613447 eV Total energy + Delta-G solvation = -3924.040851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51910 -39.94591 -37.52786 -37.29537 -36.26052 -35.47992 -32.72929 -30.88204 -30.29179 -30.17766 -28.55146 -27.63579 -25.46594 -24.00943 -22.96480 -22.16946 -21.90432 -21.29520 -19.28666 -18.27634 -17.21949 -17.08131 -16.72915 -16.67727 -16.12322 -16.03190 -15.42721 -14.93120 -14.86253 -14.50637 -14.25738 -13.88440 -13.72878 -13.61787 -13.42752 -12.94299 -12.64403 -12.57659 -12.50504 -12.39727 -12.13337 -11.92450 -11.78753 -11.38727 -11.21168 -11.08699 -10.91395 -10.80535 -10.75751 -10.58832 -10.45640 -10.26163 -9.91145 -9.24635 -8.95627 -8.72914 -8.54943 -8.09385 -6.15543 -4.14888 1.33298 1.58398 2.18920 2.61664 3.19814 3.21115 3.28730 3.28840 3.88857 4.14575 4.30881 4.31538 4.42533 4.50275 4.63351 4.74756 4.99986 5.04526 5.10975 5.15754 5.20016 5.24792 5.32885 5.39119 5.43335 5.51779 5.55761 5.63969 5.68379 5.72173 5.75002 5.84934 5.90219 5.98868 6.17145 6.42423 6.48910 6.51230 6.66499 6.82669 6.92038 6.92425 7.42715 7.53427 7.73334 7.90826 8.58935 8.95683 9.43335 10.97265 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.003805 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.433621 B = 7357.621791 C = 8703.217601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.002 4.002 3 C 0.478 3.522 4 O -0.510 6.510 5 O -0.335 6.335 6 C 0.070 3.930 7 C 0.058 3.942 8 O -0.374 6.374 9 C 0.168 3.832 10 C -0.519 4.519 11 H 0.084 0.916 12 C 0.074 3.926 13 N -0.893 5.893 14 Si 0.874 3.126 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.142 4.142 19 C 0.064 3.936 20 O -0.317 6.317 21 C 0.135 3.865 22 C -0.158 4.158 23 C -0.080 4.080 24 C -0.139 4.139 25 C -0.069 4.069 26 C -0.169 4.169 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.003 0.997 35 H 0.000 1.000 36 H 0.267 0.733 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.137 0.863 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 -9.688 -17.959 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.004 4.004 3 C 0.321 3.679 4 O -0.398 6.398 5 O -0.251 6.251 6 C -0.003 4.003 7 C -0.020 4.020 8 O -0.294 6.294 9 C 0.093 3.907 10 C -0.557 4.557 11 H 0.102 0.898 12 C -0.128 4.128 13 N -0.532 5.532 14 Si 0.701 3.299 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.179 4.179 19 C -0.011 4.011 20 O -0.231 6.231 21 C 0.090 3.910 22 C -0.176 4.176 23 C -0.098 4.098 24 C -0.157 4.157 25 C -0.086 4.086 26 C -0.170 4.170 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.018 0.982 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.557 -9.846 -18.050 21.299 hybrid contribution -0.719 1.456 0.187 1.635 sum -6.276 -8.390 -17.863 20.709 Atomic orbital electron populations 1.21993 0.90679 1.03501 1.03670 1.19316 0.97931 0.88065 0.95049 1.23261 0.77303 0.87969 0.79383 1.90636 1.35484 1.77018 1.36635 1.86579 1.69215 1.24006 1.45294 1.23228 1.00235 0.78786 0.98091 1.22402 0.97969 0.95356 0.86288 1.87975 1.71123 1.56557 1.13712 1.20637 0.94559 0.92708 0.82756 1.20852 1.30031 1.16336 0.88452 0.89837 1.24750 0.95700 0.96754 0.95613 1.69869 1.43527 1.40789 0.98974 0.86879 0.81375 0.83381 0.78278 1.19898 1.20779 1.19162 1.22233 1.04111 0.95153 0.96440 1.23009 0.95481 0.93712 0.88901 1.85978 1.65633 1.52273 1.19258 1.18585 0.97099 0.89648 0.85631 1.20516 1.06122 1.00811 0.90188 1.21077 0.97151 0.94660 0.96891 1.21312 0.99909 0.95023 0.99500 1.21633 0.95416 1.00885 0.90683 1.19290 1.08829 0.94146 0.94725 0.91580 0.90909 0.90295 0.90278 0.90271 0.91811 0.93013 0.97920 0.98210 0.92331 0.89030 0.89139 0.87110 0.91411 0.85402 0.85276 0.84560 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.17 37.16 0.30 -1.09 16 2 C 0.00 -0.03 0.61 -156.74 -0.10 -0.13 16 3 C 0.48 7.14 6.36 36.00 0.23 7.37 16 4 O -0.51 -8.44 15.53 -18.76 -0.29 -8.73 16 5 O -0.33 -5.25 7.20 -42.00 -0.30 -5.55 16 6 C 0.07 1.04 5.85 37.16 0.22 1.26 16 7 C 0.06 0.94 6.33 37.16 0.24 1.18 16 8 O -0.37 -8.32 10.30 -38.79 -0.40 -8.72 16 9 C 0.17 4.11 4.76 36.00 0.17 4.28 16 10 C -0.52 -14.92 9.99 -34.44 -0.34 -15.27 16 11 H 0.08 2.63 8.06 -52.48 -0.42 2.21 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 13 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 14 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 18 C -0.14 -1.47 4.39 -26.49 -0.12 -1.59 16 19 C 0.06 0.57 6.96 37.36 0.26 0.83 16 20 O -0.32 -3.91 10.27 -19.26 -0.20 -4.11 16 21 C 0.14 1.87 6.47 -39.20 -0.25 1.61 16 22 C -0.16 -2.09 9.94 -39.34 -0.39 -2.48 16 23 C -0.08 -1.09 10.04 -39.66 -0.40 -1.49 16 24 C -0.14 -2.22 10.04 -39.61 -0.40 -2.62 16 25 C -0.07 -1.10 8.95 -39.53 -0.35 -1.46 16 26 C -0.17 -2.41 4.70 -104.44 -0.49 -2.91 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.61 6.65 -51.93 -0.35 0.26 16 29 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.08 0.97 8.13 -51.93 -0.42 0.54 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.00 0.07 7.20 -51.93 -0.37 -0.30 16 35 H 0.00 0.01 7.57 -51.93 -0.39 -0.39 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.09 1.11 7.71 -51.93 -0.40 0.71 16 39 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.51 6.57 -51.93 -0.34 0.17 16 41 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 44 H 0.15 2.66 5.32 -52.49 -0.28 2.38 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -32.99 361.10 -7.54 -40.53 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.37 Total: 1.59 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.52 Total: -10.47 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.77 Total: -26.15 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.19 Total: -27.11 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.99 -7.54 -40.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924416735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.788 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds