Wall clock time and date at job start Tue Mar 31 2020 12:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.43116 * 2 1 4 4 O 1.20833 * 119.99655 * 239.99672 * 3 2 1 5 5 O 1.34222 * 120.00432 * 60.27939 * 3 2 1 6 6 C 1.45201 * 117.00137 * 179.71953 * 5 3 2 7 7 C 1.53006 * 109.46884 * 179.97438 * 6 5 3 8 8 O 1.42898 * 109.47206 * 65.00487 * 7 6 5 9 9 C 1.42898 * 113.99948 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46993 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00339 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99872 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99648 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00290 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47175 * 89.99549 * 14 12 10 16 16 H 1.48488 * 109.47341 * 210.00161 * 14 12 10 17 17 H 1.48508 * 109.46844 * 330.00195 * 14 12 10 18 18 C 1.53071 * 109.43458 * 240.08721 * 2 1 3 19 19 C 1.53388 * 108.31140 * 288.21311 * 18 2 1 20 20 O 1.42830 * 108.33783 * 295.22647 * 19 18 2 21 21 C 1.35847 * 117.85069 * 49.21912 * 20 19 18 22 22 C 1.39155 * 118.49232 * 163.02798 * 21 20 19 23 23 C 1.37966 * 120.21610 * 179.56299 * 22 21 20 24 24 C 1.38288 * 119.95395 * 0.03036 * 23 22 21 25 25 C 1.38106 * 119.98990 * 0.07617 * 24 23 22 26 26 C 1.38363 * 121.81072 * 342.74143 * 21 20 19 27 27 H 1.08997 * 109.47234 * 59.99768 * 1 2 3 28 28 H 1.09003 * 109.46893 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46768 * 299.99869 * 1 2 3 30 30 H 1.08997 * 109.47380 * 299.99656 * 6 5 3 31 31 H 1.08997 * 109.47403 * 60.00337 * 6 5 3 32 32 H 1.09007 * 109.46990 * 185.00264 * 7 6 5 33 33 H 1.09004 * 109.47486 * 304.99771 * 7 6 5 34 34 H 1.09001 * 109.46855 * 299.99481 * 9 8 7 35 35 H 1.09001 * 109.47288 * 59.99617 * 9 8 7 36 36 H 0.97001 * 119.99579 * 179.97438 * 13 12 10 37 37 H 1.09006 * 109.69649 * 47.86830 * 18 2 1 38 38 H 1.08994 * 109.69756 * 168.46603 * 18 2 1 39 39 H 1.08997 * 109.69145 * 175.52634 * 19 18 2 40 40 H 1.09001 * 109.74593 * 54.96042 * 19 18 2 41 41 H 1.07999 * 119.88793 * 359.55776 * 22 21 20 42 42 H 1.07997 * 120.02102 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.00246 * 180.08758 * 24 23 22 44 44 H 1.07998 * 119.84483 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0314 1.4211 0.0000 4 8 2.7259 1.8167 -0.9062 5 8 1.7113 2.2458 1.0094 6 6 2.2344 3.5988 0.9465 7 6 1.7666 4.3840 2.1736 8 8 2.3385 3.8121 3.3516 9 6 1.9626 4.4744 4.5607 10 6 2.6189 3.7911 5.7327 11 1 3.2594 2.9368 5.5704 12 6 2.4025 4.2573 7.0121 13 7 2.9757 3.6613 8.0348 14 14 1.2953 5.7353 7.2930 15 1 -0.1029 5.2760 7.4905 16 1 1.7496 6.4719 8.4996 17 1 1.3592 6.6331 6.1117 18 6 2.0394 -0.7198 -1.2512 19 6 1.7705 -2.2210 -1.0866 20 8 2.5544 -2.7006 0.0068 21 6 2.5069 -2.0072 1.1740 22 6 2.9571 -2.6293 2.3345 23 6 2.9334 -1.9549 3.5379 24 6 2.4604 -0.6566 3.5925 25 6 2.0107 -0.0367 2.4432 26 6 2.0318 -0.7090 1.2324 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.3237 3.5668 0.9289 31 1 1.8705 4.0874 0.0427 32 1 2.0842 5.4228 2.0830 33 1 0.6794 4.3411 2.2398 34 1 2.2840 5.5151 4.5199 35 1 0.8795 4.4328 4.6762 36 1 2.8237 3.9895 8.9349 37 1 1.5124 -0.3471 -2.1296 38 1 3.1098 -0.5479 -1.3638 39 1 2.0524 -2.7468 -1.9988 40 1 0.7129 -2.3852 -0.8800 41 1 3.3261 -3.6435 2.2930 42 1 3.2839 -2.4406 4.4365 43 1 2.4428 -0.1274 4.5338 44 1 1.6414 0.9771 2.4886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924416735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:30 Heat of formation + Delta-G solvation = -164.453135 kcal Electronic energy + Delta-G solvation = -27740.527625 eV Core-core repulsion = 23815.613447 eV Total energy + Delta-G solvation = -3924.914178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57396 -41.06304 -38.89944 -38.49974 -37.59744 -36.48889 -34.87873 -32.03033 -31.57333 -31.29891 -29.71025 -29.31542 -26.41032 -25.01561 -24.16530 -23.93922 -23.34330 -22.43604 -20.29533 -19.35485 -19.08999 -18.32007 -17.97109 -17.87474 -17.30003 -17.15159 -16.88346 -16.38255 -16.31766 -15.94169 -15.28994 -15.10535 -14.90722 -14.64460 -14.58475 -14.52173 -14.24523 -13.80033 -13.59208 -13.40303 -13.26401 -13.06177 -13.01745 -12.84070 -12.65643 -12.48543 -12.26560 -12.06226 -11.88452 -11.77791 -11.69870 -11.59918 -11.38638 -11.31841 -10.92535 -10.41351 -9.84846 -9.19407 -8.35853 -6.43631 0.21605 0.42475 1.01889 1.34002 1.36900 1.47239 1.52357 2.29882 2.30769 2.75215 2.93153 2.97064 3.21737 3.33708 3.59801 3.68029 3.87315 3.92616 4.06986 4.08399 4.20765 4.27407 4.34198 4.42107 4.46726 4.47498 4.53207 4.55138 4.58968 4.66027 4.74271 4.74839 4.85849 4.92834 4.99509 5.06729 5.19308 5.27380 5.33018 5.43533 5.46927 5.66017 5.78920 5.92122 6.42214 6.55649 6.60023 6.71452 7.20262 8.81137 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.003805 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.433621 B = 7357.621791 C = 8703.217601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.004 4.004 3 C 0.475 3.525 4 O -0.529 6.529 5 O -0.347 6.347 6 C 0.069 3.931 7 C 0.051 3.949 8 O -0.404 6.404 9 C 0.179 3.821 10 C -0.543 4.543 11 H 0.029 0.971 12 C 0.015 3.985 13 N -0.942 5.942 14 Si 0.953 3.047 15 H -0.260 1.260 16 H -0.276 1.276 17 H -0.243 1.243 18 C -0.138 4.138 19 C 0.060 3.940 20 O -0.323 6.323 21 C 0.135 3.865 22 C -0.157 4.157 23 C -0.078 4.078 24 C -0.167 4.167 25 C -0.086 4.086 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.272 0.728 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.144 0.856 40 H 0.089 0.911 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.109 0.891 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 -9.461 -20.269 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.005 4.005 3 C 0.319 3.681 4 O -0.419 6.419 5 O -0.263 6.263 6 C -0.004 4.004 7 C -0.026 4.026 8 O -0.324 6.324 9 C 0.104 3.896 10 C -0.581 4.581 11 H 0.048 0.952 12 C -0.183 4.183 13 N -0.581 5.581 14 Si 0.774 3.226 15 H -0.184 1.184 16 H -0.201 1.201 17 H -0.166 1.166 18 C -0.176 4.176 19 C -0.014 4.014 20 O -0.237 6.237 21 C 0.090 3.910 22 C -0.176 4.176 23 C -0.096 4.096 24 C -0.185 4.185 25 C -0.104 4.104 26 C -0.173 4.173 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.081 0.919 37 H 0.134 0.866 38 H 0.086 0.914 39 H 0.162 0.838 40 H 0.107 0.893 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.127 0.873 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.563 -9.627 -20.393 23.785 hybrid contribution -0.012 1.284 0.822 1.524 sum -7.575 -8.343 -19.570 22.583 Atomic orbital electron populations 1.22011 0.88505 1.04892 1.04020 1.19520 0.99659 0.86184 0.95147 1.23851 0.76783 0.88794 0.78691 1.90616 1.36359 1.77594 1.37307 1.86605 1.69263 1.24510 1.45885 1.23289 0.99449 0.78924 0.98725 1.22742 0.98858 0.96663 0.84297 1.87932 1.72133 1.57550 1.14791 1.20351 0.94557 0.92477 0.82248 1.21127 1.30195 1.15580 0.91182 0.95226 1.25808 0.97282 1.00449 0.94797 1.70036 1.45310 1.42984 0.99766 0.85644 0.79042 0.78793 0.79090 1.18419 1.20109 1.16616 1.22266 1.02921 0.96210 0.96179 1.23395 0.96409 0.92711 0.88916 1.85978 1.66278 1.52171 1.19254 1.18724 0.96210 0.89469 0.86589 1.20827 1.05281 1.01797 0.89660 1.21256 0.96440 0.93588 0.98314 1.21234 1.02186 0.96461 0.98653 1.21512 0.96687 1.00374 0.91795 1.19417 1.08674 0.94567 0.94659 0.89468 0.88979 0.91734 0.91853 0.86928 0.89270 0.91339 0.96668 0.96823 0.91881 0.86551 0.91365 0.83788 0.89337 0.82840 0.83248 0.87269 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.17 71.98 0.59 -1.85 16 2 C 0.00 -0.09 0.61 -53.63 -0.03 -0.13 16 3 C 0.47 14.13 6.36 71.23 0.45 14.58 16 4 O -0.53 -17.33 15.53 21.94 0.34 -16.99 16 5 O -0.35 -11.05 7.20 -48.69 -0.35 -11.40 16 6 C 0.07 2.03 5.85 71.98 0.42 2.45 16 7 C 0.05 1.62 6.33 71.98 0.46 2.07 16 8 O -0.40 -18.42 10.30 -145.58 -1.50 -19.92 16 9 C 0.18 8.76 4.76 71.24 0.34 9.10 16 10 C -0.54 -32.70 9.99 25.60 0.26 -32.44 16 11 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 12 C 0.01 0.86 5.47 84.66 0.46 1.32 16 13 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 14 Si 0.95 42.59 27.47 68.60 1.88 44.47 16 15 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 18 C -0.14 -2.56 4.39 30.75 0.13 -2.43 16 19 C 0.06 0.85 6.96 72.11 0.50 1.35 16 20 O -0.32 -7.18 10.27 -91.83 -0.94 -8.12 16 21 C 0.14 3.62 6.47 22.52 0.15 3.76 16 22 C -0.16 -4.03 9.94 22.43 0.22 -3.81 16 23 C -0.08 -2.21 10.04 22.22 0.22 -1.98 16 24 C -0.17 -5.82 10.04 22.25 0.22 -5.60 16 25 C -0.09 -2.96 8.95 22.30 0.20 -2.76 16 26 C -0.17 -4.95 4.70 -19.75 -0.09 -5.04 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.27 6.65 -2.39 -0.02 1.25 16 29 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 30 H 0.06 2.04 8.13 -2.39 -0.02 2.02 16 31 H 0.11 2.54 8.13 -2.39 -0.02 2.52 16 32 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 35 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.12 1.57 8.10 -2.38 -0.02 1.55 16 38 H 0.07 1.59 7.71 -2.39 -0.02 1.57 16 39 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 0.95 6.57 -2.39 -0.02 0.94 16 41 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 42 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 43 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 44 H 0.13 5.04 5.32 -2.91 -0.02 5.02 16 Total: -1.00 -76.13 361.10 5.18 -70.96 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.94 Total: 20.98 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 4.50 Total: -21.40 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.30 Total: -58.58 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -2.45 Total: -56.43 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.47 kcal Total: -76.13 5.18 -70.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924416735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.497 kcal (2) G-P(sol) polarization free energy of solvation -76.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds