Wall clock time and date at job start Tue Mar 31 2020 12:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46896 * 2 1 4 4 C 1.50697 * 109.47179 * 240.00334 * 2 1 3 5 5 O 1.21284 * 119.99775 * 239.99859 * 4 2 1 6 6 N 1.34773 * 120.00548 * 59.99897 * 4 2 1 7 7 C 1.46503 * 120.00441 * 180.02562 * 6 4 2 8 8 H 1.09004 * 115.51305 * 9.57931 * 7 6 4 9 9 C 1.52995 * 117.44114 * 224.24213 * 7 6 4 10 10 H 1.08993 * 119.54328 * 4.11123 * 9 7 6 11 11 C 1.54387 * 118.12385 * 160.80955 * 9 7 6 12 12 N 1.48152 * 104.62162 * 87.18357 * 11 9 7 13 13 C 1.36930 * 127.83599 * 140.41477 * 12 11 9 14 14 H 1.08000 * 120.00242 * 344.91604 * 13 12 11 15 15 C 1.38815 * 119.99683 * 164.91289 * 13 12 11 16 16 N 1.31610 * 120.00154 * 350.66731 * 15 13 12 17 17 Si 1.86803 * 119.99895 * 170.66005 * 15 13 12 18 18 H 1.48506 * 109.47034 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47061 * 120.00042 * 17 15 13 20 20 H 1.48492 * 109.47324 * 240.00381 * 17 15 13 21 21 C 1.51829 * 104.54741 * 320.14236 * 12 11 9 22 22 C 1.52992 * 117.44344 * 154.99718 * 7 6 4 23 23 H 1.08998 * 119.54545 * 355.88655 * 22 7 6 24 24 C 1.50694 * 109.47224 * 119.99680 * 2 1 3 25 25 C 1.33391 * 125.20570 * 299.98251 * 24 2 1 26 26 C 1.38420 * 114.91972 * 179.97438 * 25 24 2 27 27 C 1.33388 * 114.92714 * 0.02562 * 26 25 24 28 28 S 1.75883 * 125.20145 * 119.97362 * 24 2 1 29 29 H 1.08995 * 109.47350 * 300.00312 * 1 2 3 30 30 H 1.09006 * 109.46725 * 60.00217 * 1 2 3 31 31 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46706 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46850 * 299.99865 * 3 2 1 34 34 H 1.08999 * 109.47107 * 60.00133 * 3 2 1 35 35 H 0.97005 * 119.99948 * 359.97438 * 6 4 2 36 36 H 1.08999 * 110.41278 * 205.97465 * 11 9 7 37 37 H 1.09009 * 110.40557 * 328.28325 * 11 9 7 38 38 H 0.97006 * 120.00203 * 179.97438 * 16 15 13 39 39 H 1.08993 * 111.95577 * 281.19315 * 21 12 11 40 40 H 1.09003 * 110.52428 * 157.59516 * 21 12 11 41 41 H 1.07993 * 122.53902 * 0.02562 * 25 24 2 42 42 H 1.08006 * 122.53845 * 180.26604 * 26 25 24 43 43 H 1.07992 * 125.20952 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9408 -3.6508 8 1 2.6745 -1.9035 -3.4741 9 6 2.7449 -0.0780 -4.7882 10 1 2.8219 1.0010 -4.6553 11 6 3.6580 -0.7507 -5.8357 12 7 2.7257 -1.2929 -6.8514 13 6 2.8794 -1.3031 -8.2121 14 1 3.6277 -0.6775 -8.6758 15 6 2.0732 -2.1177 -8.9954 16 7 1.2919 -3.0118 -8.4278 17 14 2.0973 -1.9447 -10.8552 18 1 3.0534 -0.8757 -11.2406 19 1 2.5202 -3.2303 -11.4665 20 1 0.7381 -1.5909 -11.3371 21 6 1.5619 -1.8425 -6.0461 22 6 1.3810 -0.7839 -4.9368 23 1 0.4422 -0.2306 -4.9147 24 6 2.0324 -0.7103 1.2304 25 6 1.7752 -0.3459 2.4876 26 6 2.3452 -1.1531 3.4570 27 6 3.0657 -2.1726 2.9872 28 16 3.0473 -2.1468 1.2286 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.1488 0.5386 -2.5436 36 1 4.3254 -0.0160 -6.2860 37 1 4.2335 -1.5552 -5.3775 38 1 0.7283 -3.5808 -8.9751 39 1 1.7912 -2.8147 -5.6099 40 1 0.6653 -1.9036 -6.6630 41 1 1.1676 0.5131 2.7307 42 1 2.2132 -0.9733 4.5137 43 1 3.5809 -2.9026 3.5937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961453051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:33 Heat of formation + Delta-G solvation = 59.948317 kcal Electronic energy + Delta-G solvation = -24328.040304 eV Core-core repulsion = 20887.902525 eV Total energy + Delta-G solvation = -3440.137779 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.51047 -38.65473 -37.75575 -35.13806 -34.43734 -32.58242 -30.21256 -28.53166 -27.68227 -27.18185 -25.79358 -24.85647 -23.19463 -21.60225 -20.63031 -20.09000 -19.25920 -18.83395 -17.61129 -16.86168 -16.56061 -15.99717 -15.31355 -15.23086 -14.76287 -14.53543 -13.97550 -13.65400 -13.60127 -13.27333 -13.05300 -12.78742 -12.67389 -12.52671 -12.37000 -12.23646 -12.03145 -11.65216 -11.52728 -11.51273 -11.32200 -11.04107 -10.86484 -10.67431 -10.47557 -10.27103 -10.14151 -9.71439 -9.44347 -9.23993 -8.78972 -8.64515 -8.47413 -8.24087 -6.90393 -5.81174 -3.14211 1.04797 1.80242 2.28064 2.42013 2.74806 3.01237 3.36963 3.43006 3.45393 4.18995 4.23794 4.40484 4.45875 4.71499 4.73548 5.08418 5.08921 5.22461 5.28973 5.31770 5.33107 5.39347 5.39453 5.50820 5.54187 5.59634 5.73909 5.76059 5.84579 5.85732 6.06441 6.09784 6.15287 6.30768 6.48050 6.49436 6.65914 6.69527 6.84976 7.26511 7.40784 7.48633 7.67589 8.06466 8.11988 9.04190 9.70903 10.47161 11.33917 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.031998 B = 0.002544 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.845862 B =11003.159332 C =11279.932022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.009 4.009 3 C -0.135 4.135 4 C 0.522 3.478 5 O -0.519 6.519 6 N -0.686 5.686 7 C 0.092 3.908 8 H 0.133 0.867 9 C -0.181 4.181 10 H 0.103 0.897 11 C 0.158 3.842 12 N -0.598 5.598 13 C -0.224 4.224 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.916 5.916 17 Si 0.912 3.088 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.185 3.815 22 C -0.176 4.176 23 H 0.102 0.898 24 C -0.189 4.189 25 C -0.136 4.136 26 C -0.147 4.147 27 C -0.275 4.275 28 S 0.234 5.766 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.400 0.600 36 H 0.052 0.948 37 H 0.026 0.974 38 H 0.254 0.746 39 H 0.032 0.968 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.708 8.382 21.970 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.014 4.014 3 C -0.193 4.193 4 C 0.308 3.692 5 O -0.397 6.397 6 N -0.334 5.334 7 C -0.013 4.013 8 H 0.151 0.849 9 C -0.202 4.202 10 H 0.121 0.879 11 C 0.031 3.969 12 N -0.323 5.323 13 C -0.353 4.353 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.563 5.563 17 Si 0.742 3.258 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.217 1.217 21 C 0.061 3.939 22 C -0.197 4.197 23 H 0.120 0.880 24 C -0.307 4.307 25 C -0.168 4.168 26 C -0.178 4.178 27 C -0.411 4.411 28 S 0.500 5.500 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.110 0.890 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.610 6.621 20.668 21.712 hybrid contribution -1.033 1.465 0.294 1.816 sum -1.643 8.086 20.962 22.528 Atomic orbital electron populations 1.21895 0.90991 1.03426 1.03080 1.19209 0.97350 0.95766 0.89082 1.21888 1.02234 0.92143 1.03063 1.20432 0.79868 0.84291 0.84597 1.90432 1.38492 1.26596 1.84170 1.45283 1.52145 1.31189 1.04737 1.21946 1.02198 0.97619 0.79576 0.84929 1.24381 0.98793 0.98084 0.98954 0.87893 1.21057 0.91474 0.95473 0.88851 1.46072 1.16671 1.68485 1.01027 1.19055 1.17696 1.18878 0.79623 0.90466 1.24872 1.00458 0.96841 0.98236 1.69889 1.29623 1.22939 1.33825 0.86050 0.77350 0.77349 0.85022 1.20406 1.21706 1.21658 1.21704 0.93488 0.90680 0.88071 1.24592 0.94739 1.04281 0.96115 0.88008 1.24172 1.07089 1.02708 0.96751 1.19831 1.03766 1.02102 0.91057 1.19942 1.01196 0.96585 1.00066 1.26695 1.06420 1.03704 1.04235 1.85672 1.45981 1.23027 0.95366 0.90893 0.91430 0.91511 0.91575 0.91476 0.90886 0.76520 0.92986 0.95612 0.93605 0.94952 0.88968 0.85119 0.85633 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.23 37.16 0.31 -0.78 16 2 C -0.01 -0.09 0.76 -156.81 -0.12 -0.21 16 3 C -0.13 -1.06 8.23 37.16 0.31 -0.75 16 4 C 0.52 6.87 6.47 -10.99 -0.07 6.80 16 5 O -0.52 -8.55 12.42 5.55 0.07 -8.48 16 6 N -0.69 -8.54 5.35 -53.81 -0.29 -8.82 16 7 C 0.09 1.48 5.97 -67.94 -0.41 1.07 16 8 H 0.13 2.44 7.40 -51.93 -0.38 2.05 16 9 C -0.18 -3.09 7.06 -89.22 -0.63 -3.72 16 10 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 11 C 0.16 3.29 7.05 -2.41 -0.02 3.27 16 12 N -0.60 -15.10 3.45 -165.70 -0.57 -15.67 16 13 C -0.22 -6.18 10.36 -15.06 -0.16 -6.34 16 14 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 15 C -0.01 -0.20 5.41 -17.43 -0.09 -0.29 16 16 N -0.92 -26.57 10.84 55.49 0.60 -25.97 16 17 Si 0.91 21.77 29.56 -169.99 -5.03 16.74 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 C 0.19 4.34 5.92 -0.29 0.00 4.34 16 22 C -0.18 -3.17 6.96 -89.22 -0.62 -3.79 16 23 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 24 C -0.19 -2.15 5.12 -36.01 -0.18 -2.33 16 25 C -0.14 -1.36 9.31 -41.21 -0.38 -1.75 16 26 C -0.15 -1.50 10.18 -41.21 -0.42 -1.92 16 27 C -0.27 -3.00 11.23 29.04 0.33 -2.67 16 28 S 0.23 3.02 19.58 -107.50 -2.11 0.92 16 29 H 0.07 0.47 7.94 -51.93 -0.41 0.06 16 30 H 0.07 0.45 7.56 -51.93 -0.39 0.05 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 34 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 35 H 0.40 3.85 7.66 -40.82 -0.31 3.53 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 2.40 6.58 -51.93 -0.34 2.06 16 41 H 0.13 1.02 8.01 -52.49 -0.42 0.60 16 42 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -31.37 360.71 -10.47 -41.84 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.42 Total: 3.09 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -2.17 Total: -9.08 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.26 Total: -50.46 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.07 Total: -8.48 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.11 Total: 0.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.37 -10.47 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961453051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.793 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds