Wall clock time and date at job start Tue Mar 31 2020 12:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47122 * 2 1 4 4 C 1.37475 * 122.44463 * 265.02639 * 3 2 1 5 5 C 1.36651 * 113.29506 * 180.02562 * 4 3 2 6 6 C 1.46581 * 125.46091 * 179.97438 * 5 4 3 7 7 O 1.21704 * 119.99778 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00224 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99898 * 179.97438 * 8 6 5 10 10 H 1.08993 * 115.52092 * 350.41709 * 9 8 6 11 11 C 1.53006 * 117.44214 * 205.00096 * 9 8 6 12 12 H 1.09004 * 119.53393 * 5.71486 * 11 9 8 13 13 C 1.54384 * 118.12379 * 160.81331 * 11 9 8 14 14 N 1.48140 * 104.62037 * 87.19000 * 13 11 9 15 15 C 1.36933 * 127.83916 * 140.41436 * 14 13 11 16 16 H 1.08004 * 120.00032 * 195.57335 * 15 14 13 17 17 C 1.38804 * 120.00138 * 15.57530 * 15 14 13 18 18 N 1.31620 * 120.00157 * 9.09926 * 17 15 14 19 19 Si 1.86798 * 120.00453 * 189.10169 * 17 15 14 20 20 H 1.48502 * 109.46996 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47706 * 119.99544 * 19 17 15 22 22 H 1.48502 * 109.47339 * 240.00214 * 19 17 15 23 23 C 1.48150 * 104.32442 * 320.41564 * 14 13 11 24 24 C 1.53003 * 117.43817 * 135.76067 * 9 8 6 25 25 H 1.08993 * 119.54182 * 355.88842 * 24 9 8 26 26 S 1.75833 * 109.08092 * 359.97438 * 5 4 3 27 27 C 1.33811 * 122.45106 * 84.73793 * 3 2 1 28 28 C 1.50705 * 124.52078 * 359.97438 * 27 3 2 29 29 H 1.09003 * 109.47553 * 300.00383 * 1 2 3 30 30 H 1.09000 * 109.47064 * 60.00369 * 1 2 3 31 31 H 1.09003 * 109.47059 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47113 * 239.99918 * 2 1 3 33 33 H 1.09000 * 109.47064 * 119.99631 * 2 1 3 34 34 H 1.08000 * 123.35410 * 359.97286 * 4 3 2 35 35 H 0.97004 * 119.99522 * 0.02562 * 8 6 5 36 36 H 1.08998 * 110.40730 * 205.97943 * 13 11 9 37 37 H 1.09003 * 110.40296 * 328.40640 * 13 11 9 38 38 H 0.97001 * 120.00586 * 180.02562 * 18 17 15 39 39 H 1.08997 * 110.40717 * 158.36930 * 23 14 13 40 40 H 1.08998 * 110.40989 * 280.68292 * 23 14 13 41 41 H 1.09002 * 109.46577 * 90.00771 * 28 27 3 42 42 H 1.08996 * 109.46903 * 209.99871 * 28 27 3 43 43 H 1.08998 * 109.47057 * 330.00544 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3730 2.0827 -1.1558 5 6 2.8055 3.3608 -0.9393 6 6 3.2345 4.3009 -1.9788 7 8 3.2233 3.9623 -3.1477 8 7 3.6415 5.5403 -1.6402 9 6 4.0708 6.4797 -2.6791 10 1 4.1882 6.0556 -3.6762 11 6 5.0372 7.5924 -2.2680 12 1 5.4478 7.6016 -1.2582 13 6 5.8467 8.2996 -3.3762 14 7 4.9649 9.3949 -3.8423 15 6 5.3212 10.6715 -4.1862 16 1 4.5662 11.4396 -4.2673 17 6 6.6526 10.9785 -4.4305 18 7 7.5464 10.0155 -4.5085 19 14 7.1760 12.7584 -4.6486 20 1 5.9903 13.6427 -4.5167 21 1 8.1754 13.1115 -3.6086 22 1 7.7781 12.9360 -5.9944 23 6 3.6100 8.7957 -3.8519 24 6 3.5624 7.9195 -2.5816 25 1 2.8540 8.1873 -1.7977 26 16 2.7648 3.6968 0.7862 27 6 2.1740 2.1323 1.1244 28 6 1.8571 1.6191 2.5055 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3063 1.6367 -2.1371 35 1 3.6508 5.8101 -0.7084 36 1 6.7736 8.7045 -2.9702 37 1 6.0580 7.6084 -4.1922 38 1 8.4770 10.2301 -4.6789 39 1 2.8494 9.5750 -3.8047 40 1 3.4712 8.1838 -4.7432 41 1 2.7454 1.1540 2.9329 42 1 1.5415 2.4489 3.1378 43 1 1.0553 0.8833 2.4445 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962495162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:24 Heat of formation + Delta-G solvation = 25.236641 kcal Electronic energy + Delta-G solvation = -23519.097858 eV Core-core repulsion = 20077.454868 eV Total energy + Delta-G solvation = -3441.642990 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.26699 -40.15091 -39.32551 -36.15392 -34.49667 -33.82414 -32.45563 -32.08403 -28.97354 -28.47464 -27.39664 -24.85026 -24.72747 -23.16175 -22.06526 -21.52494 -20.94398 -19.64686 -19.01960 -18.86891 -17.81364 -17.09560 -16.72912 -16.21734 -16.14221 -15.56455 -15.26263 -15.07024 -14.98550 -14.67754 -14.59192 -14.08192 -13.83577 -13.60406 -13.39306 -13.34251 -13.23743 -12.92002 -12.89635 -12.76244 -12.60774 -12.41334 -12.15254 -12.02337 -11.91512 -11.84708 -11.72115 -11.59323 -11.32010 -10.89007 -10.74295 -9.92564 -9.60649 -9.36276 -8.94626 -7.92996 -5.30290 -0.56245 0.42545 0.85888 1.27100 1.46984 1.47549 1.59021 1.79500 2.00630 2.47578 2.80040 3.27080 3.52750 3.64251 3.78020 3.82450 3.85415 4.05632 4.10183 4.15779 4.33269 4.39266 4.46849 4.53778 4.61733 4.69570 4.73483 4.75688 4.84650 4.94779 4.96285 4.98748 5.11242 5.16574 5.23096 5.31181 5.33697 5.41652 5.45967 5.47939 5.54142 5.61980 6.14605 6.30788 6.98329 6.98546 7.65227 8.43634 9.21240 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.036826 B = 0.002238 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.149480 B =12508.994414 C =12781.315845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.133 4.133 4 C -0.046 4.046 5 C -0.302 4.302 6 C 0.592 3.408 7 O -0.574 6.574 8 N -0.681 5.681 9 C 0.113 3.887 10 H 0.109 0.891 11 C -0.176 4.176 12 H 0.129 0.871 13 C 0.189 3.811 14 N -0.616 5.616 15 C -0.240 4.240 16 H 0.084 0.916 17 C -0.064 4.064 18 N -0.949 5.949 19 Si 0.983 3.017 20 H -0.263 1.263 21 H -0.289 1.289 22 H -0.293 1.293 23 C 0.149 3.851 24 C -0.163 4.163 25 H 0.137 0.863 26 S 0.233 5.767 27 C -0.183 4.183 28 C -0.089 4.089 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.411 0.589 36 H 0.061 0.939 37 H -0.004 1.004 38 H 0.250 0.750 39 H 0.066 0.934 40 H 0.019 0.981 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.169 -20.040 18.754 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.080 4.080 5 C -0.421 4.421 6 C 0.380 3.620 7 O -0.455 6.455 8 N -0.329 5.329 9 C 0.006 3.994 10 H 0.126 0.874 11 C -0.197 4.197 12 H 0.146 0.854 13 C 0.063 3.937 14 N -0.340 5.340 15 C -0.368 4.368 16 H 0.102 0.898 17 C -0.258 4.258 18 N -0.597 5.597 19 Si 0.811 3.189 20 H -0.187 1.187 21 H -0.216 1.216 22 H -0.220 1.220 23 C 0.023 3.977 24 C -0.184 4.184 25 H 0.154 0.846 26 S 0.502 5.498 27 C -0.303 4.303 28 C -0.148 4.148 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.160 0.840 35 H 0.248 0.752 36 H 0.080 0.920 37 H 0.014 0.986 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.623 -18.792 18.770 29.850 hybrid contribution 0.442 -0.146 -1.310 1.390 sum -13.181 -18.938 17.460 28.935 Atomic orbital electron populations 1.21750 0.94226 1.02502 1.01877 1.20304 0.96373 0.89664 1.03789 1.18805 1.05369 0.99731 0.90607 1.20778 0.95062 0.91665 1.00502 1.24251 1.19167 1.00338 0.98387 1.17326 0.76059 0.81097 0.87473 1.90807 1.56309 1.77807 1.20592 1.45018 1.65806 1.12028 1.10098 1.21431 1.01007 0.84391 0.92536 0.87367 1.24364 0.93274 1.00486 1.01585 0.85358 1.20799 0.93743 0.87653 0.91520 1.45487 1.02956 1.09040 1.76560 1.19438 0.93049 0.84835 1.39487 0.89804 1.25795 0.96622 1.02038 1.01338 1.70105 1.01828 1.32037 1.55682 0.84948 0.78086 0.79134 0.76731 1.18716 1.21564 1.22030 1.21251 0.88136 0.94579 0.93727 1.24297 0.97755 0.94997 1.01333 0.84573 1.82778 1.59717 1.11520 0.95739 1.24506 1.05425 0.98720 1.01682 1.20599 1.03731 1.02408 0.88021 0.92079 0.93802 0.90911 0.90911 0.89181 0.83990 0.75167 0.92010 0.98593 0.94054 0.91548 0.96302 0.88974 0.89881 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.82 71.98 0.71 -0.73 16 2 C -0.06 -0.69 5.54 29.85 0.17 -0.53 16 3 C -0.13 -2.17 5.04 -21.05 -0.11 -2.28 16 4 C -0.05 -1.02 9.78 21.72 0.21 -0.80 16 5 C -0.30 -7.31 6.45 24.08 0.16 -7.16 16 6 C 0.59 18.57 7.78 86.42 0.67 19.24 16 7 O -0.57 -22.89 16.41 -4.36 -0.07 -22.96 16 8 N -0.68 -19.38 5.56 -446.59 -2.48 -21.87 16 9 C 0.11 3.96 5.98 44.99 0.27 4.22 16 10 H 0.11 4.44 7.40 -2.39 -0.02 4.42 16 11 C -0.18 -6.68 7.06 -9.88 -0.07 -6.75 16 12 H 0.13 4.24 8.14 -2.38 -0.02 4.23 16 13 C 0.19 9.53 5.70 86.53 0.49 10.02 16 14 N -0.62 -32.49 3.38 -688.17 -2.33 -34.82 16 15 C -0.24 -13.54 10.35 84.03 0.87 -12.67 16 16 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 17 C -0.06 -3.68 5.40 84.86 0.46 -3.23 16 18 N -0.95 -57.72 10.86 21.65 0.24 -57.49 16 19 Si 0.98 45.68 29.56 68.60 2.03 47.71 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 C 0.15 6.38 7.04 86.53 0.61 6.99 16 24 C -0.16 -5.71 7.06 -9.88 -0.07 -5.78 16 25 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 26 S 0.23 3.73 22.10 -56.49 -1.25 2.49 16 27 C -0.18 -2.53 6.28 24.68 0.15 -2.37 16 28 C -0.09 -0.61 9.71 71.24 0.69 0.08 16 29 H 0.06 0.53 7.21 -2.39 -0.02 0.51 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.09 0.69 7.48 -2.39 -0.02 0.68 16 34 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.41 9.09 7.94 -92.71 -0.74 8.36 16 36 H 0.06 3.47 6.51 -2.39 -0.02 3.45 16 37 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.09 0.44 6.37 -2.39 -0.02 0.43 16 Total: -1.00 -72.97 366.67 1.64 -71.33 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.29 Total: 17.35 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.21 Total: -1.74 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -4.57 Total: -114.17 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.07 Total: -22.96 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.25 Total: 2.49 kcal Total: -72.97 1.64 -71.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962495162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.568 kcal (2) G-P(sol) polarization free energy of solvation -72.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds