Wall clock time and date at job start Tue Mar 31 2020 12:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32763 * 123.45885 * 2 1 4 4 S 1.75509 * 110.57486 * 179.97438 * 3 2 1 5 5 C 1.70447 * 92.44543 * 0.02562 * 4 3 2 6 6 C 1.36010 * 110.81546 * 359.97438 * 5 4 3 7 7 C 1.47192 * 123.46052 * 180.02562 * 6 5 4 8 8 O 1.21634 * 120.00023 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99750 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00026 * 180.02562 * 9 7 6 11 11 C 1.53954 * 113.57731 * 252.72317 * 10 9 7 12 12 C 1.52908 * 86.77845 * 220.66035 * 11 10 9 13 13 C 1.52907 * 121.13480 * 150.61457 * 12 11 10 14 14 C 1.53946 * 86.78296 * 100.82332 * 13 12 11 15 15 N 1.46503 * 113.58595 * 139.33673 * 14 13 12 16 16 C 1.36935 * 120.00186 * 107.27272 * 15 14 13 17 17 H 1.08000 * 119.99849 * 0.02562 * 16 15 14 18 18 C 1.38804 * 120.00173 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00074 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00232 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47341 * 60.00361 * 20 18 16 22 22 H 1.48500 * 109.47437 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47253 * 300.00195 * 20 18 16 24 24 C 1.52913 * 121.13630 * 259.17415 * 12 11 10 25 25 C 1.52909 * 88.04610 * 24.89452 * 12 11 10 26 26 H 1.09000 * 109.47244 * 90.02233 * 1 2 3 27 27 H 1.08999 * 109.47386 * 210.02499 * 1 2 3 28 28 H 1.08998 * 109.47093 * 330.02349 * 1 2 3 29 29 H 1.07996 * 124.71353 * 359.97438 * 3 2 1 30 30 H 1.07992 * 124.58999 * 180.02562 * 5 4 3 31 31 H 0.97001 * 120.00372 * 359.97438 * 9 7 6 32 32 H 1.09001 * 112.81927 * 23.90376 * 10 9 7 33 33 H 1.09001 * 113.65797 * 335.12485 * 11 10 9 34 34 H 1.08993 * 113.66435 * 106.18609 * 11 10 9 35 35 H 1.09009 * 113.66384 * 215.29103 * 13 12 11 36 36 H 1.09001 * 113.66522 * 346.34954 * 13 12 11 37 37 H 1.09002 * 113.57964 * 270.12811 * 14 13 12 38 38 H 0.96997 * 119.99708 * 287.27981 * 15 14 13 39 39 H 0.97002 * 120.00606 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.65980 * 13.65462 * 24 12 11 41 41 H 1.09002 * 113.65999 * 144.61586 * 24 12 11 42 42 H 1.08992 * 113.66752 * 220.62964 * 25 12 11 43 43 H 1.09002 * 113.65963 * 89.57317 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2389 1.1076 0.0000 4 16 3.9498 0.7163 0.0007 5 6 3.6410 -0.9600 0.0003 6 6 2.3032 -1.2050 0.0002 7 6 1.7261 -2.5590 0.0003 8 8 0.5186 -2.7055 0.0007 9 7 2.5357 -3.6366 0.0001 10 6 1.9613 -4.9843 -0.0003 11 6 2.1053 -5.7155 1.3468 12 6 2.4285 -6.9694 0.5336 13 6 3.3400 -8.0618 1.0936 14 6 2.0559 -8.8478 1.4147 15 7 2.1605 -10.2818 1.1335 16 6 2.2513 -11.1771 2.1657 17 1 2.2452 -10.8261 3.1871 18 6 2.3510 -12.5357 1.8994 19 7 2.3588 -12.9634 0.6547 20 14 2.4740 -13.7570 3.3074 21 1 1.2665 -13.6473 4.1648 22 1 2.5701 -15.1345 2.7610 23 1 3.6838 -13.4602 4.1159 24 6 1.3724 -8.0482 0.2907 25 6 2.8962 -6.0520 -0.5969 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 1.8374 2.1102 -0.0004 30 1 4.4043 -1.7240 0.0009 31 1 3.4986 -3.5198 -0.0006 32 1 0.9506 -5.0130 -0.4075 33 1 2.9396 -5.3589 1.9510 34 1 1.1737 -5.7861 1.9081 35 1 3.9671 -8.5376 0.3395 36 1 3.8980 -7.7551 1.9784 37 1 1.6529 -8.6387 2.4056 38 1 2.1657 -10.5970 0.2162 39 1 2.4281 -13.9129 0.4684 40 1 0.3585 -7.7305 0.5339 41 1 1.4454 -8.5189 -0.6898 42 1 2.5963 -6.3915 -1.5882 43 1 3.9527 -5.7901 -0.5389 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963672482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:09 Heat of formation + Delta-G solvation = 44.624912 kcal Electronic energy + Delta-G solvation = -23552.484462 eV Core-core repulsion = 20111.682210 eV Total energy + Delta-G solvation = -3440.802252 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68607 -39.60309 -37.41500 -35.83897 -33.79562 -32.47643 -31.02603 -29.48538 -27.96844 -25.77720 -25.27476 -24.99727 -23.98264 -22.56267 -20.90984 -20.18658 -19.10248 -18.09856 -17.80567 -17.17626 -16.96736 -16.09590 -15.40348 -15.04549 -14.81744 -14.54489 -14.18451 -13.91607 -13.73176 -13.55478 -13.37076 -12.97623 -12.73959 -12.59079 -12.42357 -12.35036 -12.15284 -12.09775 -11.66322 -11.31485 -11.25650 -10.98207 -10.87908 -10.68740 -10.36720 -10.09991 -9.91862 -9.78083 -9.71040 -9.36328 -9.30318 -9.09842 -8.84060 -8.69157 -6.93579 -5.76350 -3.04775 0.38140 1.15599 1.52644 1.66088 3.01008 3.12151 3.44525 3.48891 3.49908 4.25888 4.53941 4.57780 4.65549 4.71319 4.79136 4.80414 4.89417 4.93929 5.23375 5.31126 5.40717 5.46062 5.51256 5.56743 5.66202 5.71469 5.80112 5.90743 5.92729 5.95238 5.99866 6.08946 6.20117 6.23108 6.28230 6.38224 6.44105 6.51314 6.65390 6.94619 7.15369 7.34430 7.70851 8.05194 8.42551 9.53367 10.12290 10.46704 11.46067 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.035866 B = 0.001988 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.500200 B =14079.783822 C =14350.119658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.050 4.050 3 C -0.246 4.246 4 S 0.182 5.818 5 C -0.212 4.212 6 C -0.151 4.151 7 C 0.576 3.424 8 O -0.532 6.532 9 N -0.713 5.713 10 C 0.124 3.876 11 C -0.124 4.124 12 C -0.102 4.102 13 C -0.149 4.149 14 C 0.168 3.832 15 N -0.713 5.713 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.129 4.129 25 C -0.130 4.130 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.397 0.603 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.256 30.416 -3.351 30.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.061 4.061 3 C -0.381 4.381 4 S 0.449 5.551 5 C -0.350 4.350 6 C -0.170 4.170 7 C 0.362 3.638 8 O -0.410 6.410 9 N -0.363 5.363 10 C 0.020 3.980 11 C -0.163 4.163 12 C -0.103 4.103 13 C -0.190 4.190 14 C 0.057 3.943 15 N -0.351 5.351 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.168 4.168 25 C -0.168 4.168 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.186 0.814 30 H 0.187 0.813 31 H 0.232 0.768 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.722 31.041 -3.189 31.426 hybrid contribution -0.447 -1.630 0.395 1.736 sum 3.275 29.411 -2.794 29.724 Atomic orbital electron populations 1.20672 0.88555 1.03819 1.02998 1.19898 0.97658 0.89838 0.98703 1.25322 0.96324 1.02700 1.13747 1.83038 1.05770 0.96762 1.69515 1.25653 0.99631 1.02926 1.06781 1.20253 0.92088 0.94563 1.10058 1.17623 0.86488 0.83580 0.76151 1.90751 1.14030 1.86388 1.49791 1.45948 1.09637 1.05909 1.74829 1.22672 0.99065 0.78478 0.97786 1.23141 1.02167 0.94698 0.96247 1.22077 0.99837 0.92288 0.96106 1.23640 0.99069 0.96289 0.99971 1.21534 0.92783 0.84256 0.95771 1.42411 1.86498 0.99578 1.06643 1.19264 1.42392 0.87556 0.88135 0.91184 1.24761 1.02945 0.97019 0.96298 1.69649 1.57391 1.14099 1.17026 0.86265 0.77880 0.80617 0.81404 1.21245 1.21712 1.21282 1.23213 0.96810 0.95585 1.01152 1.23178 0.99004 0.95462 0.99205 0.90968 0.88804 0.91897 0.81421 0.81284 0.76847 0.86641 0.89910 0.90863 0.90305 0.92753 0.90803 0.78120 0.93453 0.92039 0.90021 0.90778 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.55 36.00 0.34 -0.59 16 2 C -0.05 -0.47 6.01 -104.06 -0.63 -1.10 16 3 C -0.25 -1.78 10.91 28.86 0.31 -1.47 16 4 S 0.18 1.10 23.02 -107.50 -2.48 -1.37 16 5 C -0.21 -1.54 10.38 29.93 0.31 -1.23 16 6 C -0.15 -1.50 5.98 -104.63 -0.63 -2.12 16 7 C 0.58 6.89 7.79 -12.62 -0.10 6.80 16 8 O -0.53 -8.03 13.81 5.25 0.07 -7.96 16 9 N -0.71 -7.19 5.32 -54.00 -0.29 -7.47 16 10 C 0.12 1.44 4.24 -66.95 -0.28 1.16 16 11 C -0.12 -1.54 7.64 -26.28 -0.20 -1.74 16 12 C -0.10 -1.42 1.11 -154.71 -0.17 -1.59 16 13 C -0.15 -2.52 7.64 -26.29 -0.20 -2.72 16 14 C 0.17 3.34 4.48 -66.95 -0.30 3.04 16 15 N -0.71 -17.97 5.40 -52.48 -0.28 -18.25 16 16 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 20 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.13 -2.12 7.59 -26.28 -0.20 -2.32 16 25 C -0.13 -1.49 7.59 -26.29 -0.20 -1.69 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.07 6.02 -51.93 -0.31 0.76 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.17 0.81 7.01 -52.49 -0.37 0.44 16 31 H 0.40 2.93 7.22 -40.82 -0.29 2.63 16 32 H 0.12 1.54 7.46 -51.93 -0.39 1.15 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.43 8.14 -51.92 -0.42 1.00 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 38 H 0.38 10.26 7.92 -40.82 -0.32 9.94 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.39 8.12 -51.93 -0.42 0.96 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -32.19 367.16 -10.22 -42.41 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.30 Total: 10.20 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.18 Total: -12.99 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.15 Total: -53.27 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.07 Total: -7.96 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.48 Total: -1.37 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.19 -10.22 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963672482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.039 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds