Wall clock time and date at job start Tue Mar 31 2020 12:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32763 * 123.45885 * 2 1 4 4 S 1.75509 * 110.57486 * 179.97438 * 3 2 1 5 5 C 1.70447 * 92.44543 * 0.02562 * 4 3 2 6 6 C 1.36010 * 110.81546 * 359.97438 * 5 4 3 7 7 C 1.47192 * 123.46052 * 180.02562 * 6 5 4 8 8 O 1.21634 * 120.00023 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99750 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00026 * 180.02562 * 9 7 6 11 11 C 1.53954 * 113.57731 * 252.72317 * 10 9 7 12 12 C 1.52908 * 86.77845 * 220.66035 * 11 10 9 13 13 C 1.52907 * 121.13480 * 150.61457 * 12 11 10 14 14 C 1.53946 * 86.78296 * 100.82332 * 13 12 11 15 15 N 1.46503 * 113.58595 * 139.33673 * 14 13 12 16 16 C 1.36935 * 120.00186 * 107.27272 * 15 14 13 17 17 H 1.08000 * 119.99849 * 0.02562 * 16 15 14 18 18 C 1.38804 * 120.00173 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00074 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00232 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47341 * 60.00361 * 20 18 16 22 22 H 1.48500 * 109.47437 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47253 * 300.00195 * 20 18 16 24 24 C 1.52913 * 121.13630 * 259.17415 * 12 11 10 25 25 C 1.52909 * 88.04610 * 24.89452 * 12 11 10 26 26 H 1.09000 * 109.47244 * 90.02233 * 1 2 3 27 27 H 1.08999 * 109.47386 * 210.02499 * 1 2 3 28 28 H 1.08998 * 109.47093 * 330.02349 * 1 2 3 29 29 H 1.07996 * 124.71353 * 359.97438 * 3 2 1 30 30 H 1.07992 * 124.58999 * 180.02562 * 5 4 3 31 31 H 0.97001 * 120.00372 * 359.97438 * 9 7 6 32 32 H 1.09001 * 112.81927 * 23.90376 * 10 9 7 33 33 H 1.09001 * 113.65797 * 335.12485 * 11 10 9 34 34 H 1.08993 * 113.66435 * 106.18609 * 11 10 9 35 35 H 1.09009 * 113.66384 * 215.29103 * 13 12 11 36 36 H 1.09001 * 113.66522 * 346.34954 * 13 12 11 37 37 H 1.09002 * 113.57964 * 270.12811 * 14 13 12 38 38 H 0.96997 * 119.99708 * 287.27981 * 15 14 13 39 39 H 0.97002 * 120.00606 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.65980 * 13.65462 * 24 12 11 41 41 H 1.09002 * 113.65999 * 144.61586 * 24 12 11 42 42 H 1.08992 * 113.66752 * 220.62964 * 25 12 11 43 43 H 1.09002 * 113.65963 * 89.57317 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2389 1.1076 0.0000 4 16 3.9498 0.7163 0.0007 5 6 3.6410 -0.9600 0.0003 6 6 2.3032 -1.2050 0.0002 7 6 1.7261 -2.5590 0.0003 8 8 0.5186 -2.7055 0.0007 9 7 2.5357 -3.6366 0.0001 10 6 1.9613 -4.9843 -0.0003 11 6 2.1053 -5.7155 1.3468 12 6 2.4285 -6.9694 0.5336 13 6 3.3400 -8.0618 1.0936 14 6 2.0559 -8.8478 1.4147 15 7 2.1605 -10.2818 1.1335 16 6 2.2513 -11.1771 2.1657 17 1 2.2452 -10.8261 3.1871 18 6 2.3510 -12.5357 1.8994 19 7 2.3588 -12.9634 0.6547 20 14 2.4740 -13.7570 3.3074 21 1 1.2665 -13.6473 4.1648 22 1 2.5701 -15.1345 2.7610 23 1 3.6838 -13.4602 4.1159 24 6 1.3724 -8.0482 0.2907 25 6 2.8962 -6.0520 -0.5969 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 1.8374 2.1102 -0.0004 30 1 4.4043 -1.7240 0.0009 31 1 3.4986 -3.5198 -0.0006 32 1 0.9506 -5.0130 -0.4075 33 1 2.9396 -5.3589 1.9510 34 1 1.1737 -5.7861 1.9081 35 1 3.9671 -8.5376 0.3395 36 1 3.8980 -7.7551 1.9784 37 1 1.6529 -8.6387 2.4056 38 1 2.1657 -10.5970 0.2162 39 1 2.4281 -13.9129 0.4684 40 1 0.3585 -7.7305 0.5339 41 1 1.4454 -8.5189 -0.6898 42 1 2.5963 -6.3915 -1.5882 43 1 3.9527 -5.7901 -0.5389 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963672482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:09 Heat of formation + Delta-G solvation = 24.781103 kcal Electronic energy + Delta-G solvation = -23553.344954 eV Core-core repulsion = 20111.682210 eV Total energy + Delta-G solvation = -3441.662744 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73242 -40.58155 -38.17835 -37.14694 -35.31038 -33.85561 -31.97617 -31.16474 -28.61659 -26.77591 -26.67247 -26.16784 -25.50610 -23.66576 -21.86509 -21.47724 -19.95315 -19.37624 -18.64165 -18.59887 -17.93951 -17.04573 -16.86508 -16.16087 -16.07994 -15.75508 -15.38033 -15.29633 -14.69299 -14.55760 -14.17853 -14.11159 -13.67109 -13.64794 -13.55810 -13.39456 -13.08232 -13.00182 -12.96044 -12.81069 -12.77836 -12.34084 -12.28060 -12.09417 -11.89514 -11.82180 -11.36890 -11.06142 -10.90353 -10.80139 -10.66051 -10.07811 -9.83100 -9.23499 -8.96785 -7.94092 -5.22237 -0.20515 0.64951 0.97513 0.97888 1.46937 1.50015 1.56091 2.19601 2.31693 2.56814 3.36773 3.49612 3.53274 3.66969 3.75422 3.84086 3.95044 4.02514 4.21929 4.28518 4.34437 4.40223 4.50882 4.61510 4.65538 4.73149 4.78966 4.81751 4.82113 4.93970 4.98776 5.00644 5.06633 5.08798 5.13157 5.26651 5.29759 5.44278 5.54474 5.58819 5.63485 5.70944 6.28244 6.56328 7.23570 7.33772 8.11822 8.34853 9.29032 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.035866 B = 0.001988 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.500200 B =14079.783822 C =14350.119658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.079 4.079 3 C -0.247 4.247 4 S 0.240 5.760 5 C -0.206 4.206 6 C -0.184 4.184 7 C 0.572 3.428 8 O -0.574 6.574 9 N -0.701 5.701 10 C 0.131 3.869 11 C -0.119 4.119 12 C -0.090 4.090 13 C -0.137 4.137 14 C 0.146 3.854 15 N -0.729 5.729 16 C -0.244 4.244 17 H 0.075 0.925 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 0.973 3.027 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.277 1.277 24 C -0.123 4.123 25 C -0.117 4.117 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.189 0.811 30 H 0.195 0.805 31 H 0.413 0.587 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 32.944 -2.798 33.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.090 4.090 3 C -0.382 4.382 4 S 0.508 5.492 5 C -0.344 4.344 6 C -0.202 4.202 7 C 0.359 3.641 8 O -0.455 6.455 9 N -0.352 5.352 10 C 0.026 3.974 11 C -0.158 4.158 12 C -0.091 4.091 13 C -0.178 4.178 14 C 0.037 3.963 15 N -0.367 5.367 16 C -0.376 4.376 17 H 0.093 0.907 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.802 3.198 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.203 1.203 24 C -0.162 4.162 25 C -0.155 4.155 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.206 0.794 30 H 0.212 0.788 31 H 0.250 0.750 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.205 0.795 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.784 33.636 -2.614 34.229 hybrid contribution -1.036 -2.264 0.236 2.500 sum 4.749 31.372 -2.378 31.818 Atomic orbital electron populations 1.20577 0.89279 1.03267 1.02566 1.20001 0.97697 0.90639 1.00661 1.25634 0.97387 1.03067 1.12123 1.82911 1.03939 0.94992 1.67398 1.26026 0.99107 1.04815 1.04468 1.20145 0.93281 0.93493 1.13323 1.18021 0.86098 0.84699 0.75281 1.90733 1.15874 1.87065 1.51861 1.45763 1.10356 1.04849 1.74199 1.22377 0.98425 0.79464 0.97110 1.23166 1.02350 0.93640 0.96604 1.21888 0.97370 0.91932 0.97912 1.23392 0.97751 0.96479 1.00128 1.21915 0.95521 0.82131 0.96754 1.42597 1.87062 1.01508 1.05490 1.19662 1.40607 0.88308 0.88997 0.90712 1.25582 1.03894 0.98908 0.98683 1.69809 1.59388 1.13920 1.18982 0.85212 0.78178 0.77846 0.78533 1.20504 1.22200 1.20319 1.23083 0.97741 0.95947 0.99433 1.23148 1.00328 0.93819 0.98160 0.91429 0.91607 0.90099 0.79412 0.78800 0.74970 0.88593 0.88176 0.91870 0.91455 0.91866 0.91342 0.79477 0.94056 0.91685 0.90664 0.90607 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 9.55 71.23 0.68 -1.16 16 2 C -0.08 -1.42 6.01 -19.46 -0.12 -1.54 16 3 C -0.25 -2.99 10.91 66.64 0.73 -2.26 16 4 S 0.24 2.07 23.02 -56.49 -1.30 0.77 16 5 C -0.21 -2.37 10.38 67.30 0.70 -1.67 16 6 C -0.18 -3.41 5.98 -19.87 -0.12 -3.53 16 7 C 0.57 13.41 7.79 86.60 0.67 14.08 16 8 O -0.57 -17.95 13.81 -4.14 -0.06 -18.01 16 9 N -0.70 -12.84 5.32 -442.99 -2.36 -15.20 16 10 C 0.13 2.87 4.24 45.63 0.19 3.06 16 11 C -0.12 -2.76 7.64 30.89 0.24 -2.53 16 12 C -0.09 -2.38 1.11 -52.31 -0.06 -2.44 16 13 C -0.14 -4.50 7.64 30.88 0.24 -4.26 16 14 C 0.15 5.83 4.48 45.62 0.20 6.04 16 15 N -0.73 -37.47 5.40 -319.94 -1.73 -39.19 16 16 C -0.24 -13.76 9.97 84.03 0.84 -12.92 16 17 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 19 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16 20 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 C -0.12 -4.07 7.59 30.88 0.23 -3.84 16 25 C -0.12 -2.40 7.59 30.88 0.23 -2.16 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.61 6.02 -2.39 -0.01 1.59 16 28 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 29 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.19 1.06 7.01 -2.91 -0.02 1.03 16 31 H 0.41 4.77 7.22 -92.71 -0.67 4.10 16 32 H 0.10 2.55 7.46 -2.39 -0.02 2.53 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.77 8.10 -2.39 -0.02 2.75 16 38 H 0.37 20.55 7.92 -92.71 -0.73 19.81 16 39 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.11 1.74 8.12 -2.39 -0.02 1.72 16 Total: -1.00 -71.79 367.16 1.63 -70.16 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.37 Total: 31.85 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 5.13 Total: -19.23 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -3.80 Total: -114.20 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.06 Total: -18.01 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.30 Total: 0.77 kcal Total: -71.79 1.63 -70.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963672482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.945 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds