Wall clock time and date at job start Tue Mar 31 2020 12:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75503 * 124.70926 * 2 1 4 4 C 1.70451 * 92.44247 * 179.97438 * 3 2 1 5 5 C 1.36006 * 110.81687 * 359.97438 * 4 3 2 6 6 C 1.47197 * 123.46064 * 179.97438 * 5 4 3 7 7 O 1.21625 * 119.99982 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99791 * 0.02820 * 6 5 4 9 9 C 1.46493 * 119.99868 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47271 * 180.02562 * 9 8 6 11 11 H 1.09000 * 115.51467 * 330.41226 * 10 9 8 12 12 C 1.53005 * 117.44585 * 184.99851 * 10 9 8 13 13 H 1.09004 * 119.53462 * 4.11748 * 12 10 9 14 14 C 1.54384 * 118.12205 * 160.80877 * 12 10 9 15 15 N 1.48143 * 104.61711 * 87.19267 * 14 12 10 16 16 C 1.36939 * 127.83674 * 140.39609 * 15 14 12 17 17 H 1.08001 * 119.99906 * 195.57433 * 16 15 14 18 18 C 1.38812 * 120.00312 * 15.56306 * 16 15 14 19 19 N 1.31625 * 119.99672 * 9.01799 * 18 16 15 20 20 Si 1.86797 * 120.00362 * 189.00706 * 18 16 15 21 21 H 1.48506 * 109.46993 * 94.44849 * 20 18 16 22 22 H 1.48497 * 109.47586 * 214.45044 * 20 18 16 23 23 H 1.48499 * 109.47089 * 334.45613 * 20 18 16 24 24 C 1.48142 * 104.32554 * 320.41189 * 15 14 12 25 25 C 1.53005 * 117.44403 * 115.75602 * 10 9 8 26 26 H 1.09003 * 119.53649 * 355.89043 * 25 10 9 27 27 C 1.32766 * 124.71099 * 179.69190 * 2 1 3 28 28 C 1.50701 * 123.45992 * 0.04096 * 27 2 1 29 29 H 1.08992 * 109.47191 * 0.02737 * 1 2 3 30 30 H 1.08997 * 109.47117 * 240.02542 * 1 2 3 31 31 H 1.09006 * 109.47008 * 120.02572 * 1 2 3 32 32 H 1.08001 * 124.59151 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00188 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.47345 * 299.99857 * 9 8 6 35 35 H 1.08993 * 109.47517 * 60.00213 * 9 8 6 36 36 H 1.09007 * 110.40752 * 205.97836 * 14 12 10 37 37 H 1.09000 * 110.40595 * 328.40505 * 14 12 10 38 38 H 0.96999 * 119.99337 * 179.97438 * 19 18 16 39 39 H 1.08998 * 110.40917 * 280.80516 * 24 15 14 40 40 H 1.09000 * 110.50924 * 158.41688 * 24 15 14 41 41 H 1.08997 * 109.47173 * 90.02126 * 28 27 2 42 42 H 1.09002 * 109.47016 * 210.01955 * 28 27 2 43 43 H 1.08993 * 109.47150 * 330.02140 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5064 1.4427 0.0000 4 6 3.9476 0.5328 0.0008 5 6 3.6777 -0.8002 0.0016 6 6 4.7201 -1.8395 0.0018 7 8 4.4072 -3.0148 0.0021 8 7 6.0214 -1.4886 0.0018 9 6 7.0589 -2.5228 0.0026 10 6 8.4385 -1.8613 0.0030 11 1 8.4923 -0.8871 -0.4829 12 6 9.6593 -2.7761 -0.1144 13 1 9.5164 -3.8467 -0.2615 14 6 10.9970 -2.1503 -0.5645 15 7 11.6234 -1.6664 0.6877 16 6 12.9447 -1.7236 1.0426 17 1 13.2348 -1.5687 2.0713 18 6 13.9114 -1.9808 0.0802 19 7 13.5838 -1.9936 -1.1946 20 14 15.6772 -2.3084 0.5941 21 1 15.8950 -3.7727 0.7116 22 1 16.6012 -1.7508 -0.4259 23 1 15.9391 -1.6624 1.9053 24 6 10.4960 -1.1069 1.4691 25 6 9.3289 -2.0880 1.2265 26 1 8.9399 -2.6461 2.0782 27 6 2.2630 -1.0914 0.0059 28 6 1.7027 -2.4903 0.0125 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5134 0.8902 31 1 -0.3633 -0.5143 -0.8898 32 1 4.9408 0.9572 0.0006 33 1 6.2710 -0.5512 0.0020 34 1 6.9534 -3.1426 0.8929 35 1 6.9537 -3.1437 -0.8869 36 1 11.6277 -2.9022 -1.0391 37 1 10.8173 -1.3187 -1.2458 38 1 14.2594 -2.1730 -1.8671 39 1 10.2381 -0.1123 1.1054 40 1 10.7472 -1.0699 2.5291 41 1 1.5685 -2.8328 -1.0135 42 1 2.3933 -3.1559 0.5304 43 1 0.7410 -2.4940 0.5254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978203330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:23 Heat of formation + Delta-G solvation = 44.164442 kcal Electronic energy + Delta-G solvation = -23509.815025 eV Core-core repulsion = 20068.992806 eV Total energy + Delta-G solvation = -3440.822219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.15658 -38.87081 -37.60292 -35.03642 -33.52356 -32.57510 -30.81869 -29.62819 -27.67680 -27.14147 -25.77852 -25.05256 -23.86381 -21.18729 -20.70135 -19.84663 -19.27521 -18.73112 -17.80045 -17.06699 -16.80957 -15.68189 -15.44408 -14.92816 -14.64061 -14.55833 -14.23010 -13.93991 -13.65722 -13.25061 -13.14227 -12.94065 -12.87458 -12.72557 -12.65034 -12.36470 -12.10939 -11.96577 -11.84432 -11.27482 -11.11829 -11.08781 -10.85936 -10.66447 -10.32465 -10.13708 -9.94513 -9.75766 -9.42817 -9.15718 -9.01826 -8.91015 -8.66249 -8.57512 -6.88909 -5.81645 -3.16137 0.48610 1.22447 1.61478 1.73700 3.08392 3.23907 3.37051 3.42438 3.44441 4.12135 4.34264 4.44711 4.66129 4.78753 4.87127 4.95713 5.04818 5.15548 5.27879 5.32883 5.37356 5.42632 5.45693 5.49482 5.54013 5.60230 5.77716 5.79804 5.87867 5.90034 5.95271 5.99734 6.20963 6.30938 6.40123 6.54306 6.64145 6.68758 6.89849 7.33589 7.44021 7.51372 7.70095 8.14682 8.19133 9.09220 9.71907 10.48830 11.32645 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.033941 B = 0.002101 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.763471 B =13325.000639 C =13774.710660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.213 4.213 3 S 0.181 5.819 4 C -0.213 4.213 5 C -0.146 4.146 6 C 0.575 3.425 7 O -0.536 6.536 8 N -0.718 5.718 9 C 0.156 3.844 10 C -0.151 4.151 11 H 0.102 0.898 12 C -0.161 4.161 13 H 0.104 0.896 14 C 0.184 3.816 15 N -0.594 5.594 16 C -0.227 4.227 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.916 5.916 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.154 3.846 25 C -0.171 4.171 26 H 0.103 0.897 27 C -0.057 4.057 28 C -0.098 4.098 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.023 0.977 38 H 0.254 0.746 39 H 0.023 0.977 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.199 5.684 1.570 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.330 4.330 3 S 0.449 5.551 4 C -0.351 4.351 5 C -0.164 4.164 6 C 0.360 3.640 7 O -0.414 6.414 8 N -0.369 5.369 9 C 0.033 3.967 10 C -0.170 4.170 11 H 0.120 0.880 12 C -0.181 4.181 13 H 0.122 0.878 14 C 0.058 3.942 15 N -0.318 5.318 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.562 5.562 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.028 3.972 25 C -0.191 4.191 26 H 0.121 0.879 27 C -0.068 4.068 28 C -0.157 4.157 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.188 0.812 33 H 0.234 0.766 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.407 6.391 1.491 27.211 hybrid contribution 1.599 -1.106 0.186 1.953 sum -24.809 5.285 1.677 25.421 Atomic orbital electron populations 1.20282 0.87504 1.02689 1.03056 1.24164 1.00375 0.95590 1.12874 1.82980 0.93656 1.08305 1.70114 1.25612 1.04824 0.97586 1.07101 1.20150 0.93980 0.92441 1.09815 1.17574 0.81980 0.87913 0.76501 1.90739 1.81900 1.18628 1.50146 1.45909 1.05378 1.10710 1.74924 1.20890 0.84113 0.89448 1.02262 1.22529 0.90130 1.01049 1.03284 0.88005 1.24242 0.95139 0.97676 1.01063 0.87829 1.21069 0.87457 0.97107 0.88575 1.45210 1.02559 1.67214 1.16810 1.19016 0.80228 1.43052 0.93208 0.90549 1.24908 0.98115 1.02174 0.95159 1.69902 1.32935 1.54370 0.98986 0.86082 0.84088 0.78004 0.77463 1.21508 1.21666 1.20496 1.21132 0.86901 0.93194 0.96006 1.24003 0.99846 1.03877 0.91410 0.87896 1.19719 0.90247 0.96720 1.00069 1.20630 1.00710 0.91543 1.02808 0.91498 0.90553 0.90574 0.81184 0.76585 0.91261 0.90933 0.89130 0.95885 0.93554 0.95906 0.93180 0.91088 0.88993 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 9.46 36.01 0.34 -0.10 16 2 C -0.21 -1.84 6.44 -36.18 -0.23 -2.07 16 3 S 0.18 1.38 23.00 -107.50 -2.47 -1.09 16 4 C -0.21 -1.91 10.38 29.93 0.31 -1.60 16 5 C -0.15 -1.66 5.98 -104.63 -0.63 -2.28 16 6 C 0.57 7.75 7.79 -12.62 -0.10 7.65 16 7 O -0.54 -8.73 14.21 5.26 0.07 -8.65 16 8 N -0.72 -8.69 5.52 -61.46 -0.34 -9.03 16 9 C 0.16 2.12 5.95 -4.04 -0.02 2.10 16 10 C -0.15 -2.29 5.39 -90.61 -0.49 -2.78 16 11 H 0.10 1.53 8.04 -51.93 -0.42 1.11 16 12 C -0.16 -3.01 6.85 -89.22 -0.61 -3.62 16 13 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 14 C 0.18 4.37 5.70 -2.41 -0.01 4.36 16 15 N -0.59 -15.17 3.38 -168.87 -0.57 -15.74 16 16 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 17 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 18 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 19 N -0.92 -26.73 10.86 55.49 0.60 -26.13 16 20 Si 0.91 21.90 29.56 -169.99 -5.03 16.88 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.15 3.19 7.04 -2.41 -0.02 3.17 16 25 C -0.17 -3.00 6.74 -89.21 -0.60 -3.60 16 26 H 0.10 1.67 8.12 -51.93 -0.42 1.25 16 27 C -0.06 -0.61 6.01 -104.06 -0.63 -1.23 16 28 C -0.10 -0.98 9.26 36.01 0.33 -0.65 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.39 7.94 -51.93 -0.41 -0.02 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.17 1.16 7.01 -52.49 -0.37 0.79 16 33 H 0.40 3.93 6.90 -40.82 -0.28 3.65 16 34 H 0.07 0.99 7.94 -51.93 -0.41 0.57 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 2.42 6.51 -51.92 -0.34 2.08 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.12 6.04 -51.93 -0.31 0.81 16 43 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -32.04 363.76 -11.13 -43.17 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.28 Total: 2.53 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -2.60 Total: -7.41 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.31 Total: -50.90 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.47 Total: -1.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.04 -11.13 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978203330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.332 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds