Wall clock time and date at job start Tue Mar 31 2020 12:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75503 * 124.70926 * 2 1 4 4 C 1.70451 * 92.44247 * 179.97438 * 3 2 1 5 5 C 1.36006 * 110.81687 * 359.97438 * 4 3 2 6 6 C 1.47197 * 123.46064 * 179.97438 * 5 4 3 7 7 O 1.21625 * 119.99982 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99791 * 0.02820 * 6 5 4 9 9 C 1.46493 * 119.99868 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47271 * 180.02562 * 9 8 6 11 11 H 1.09000 * 115.51467 * 330.41226 * 10 9 8 12 12 C 1.53005 * 117.44585 * 184.99851 * 10 9 8 13 13 H 1.09004 * 119.53462 * 4.11748 * 12 10 9 14 14 C 1.54384 * 118.12205 * 160.80877 * 12 10 9 15 15 N 1.48143 * 104.61711 * 87.19267 * 14 12 10 16 16 C 1.36939 * 127.83674 * 140.39609 * 15 14 12 17 17 H 1.08001 * 119.99906 * 195.57433 * 16 15 14 18 18 C 1.38812 * 120.00312 * 15.56306 * 16 15 14 19 19 N 1.31625 * 119.99672 * 9.01799 * 18 16 15 20 20 Si 1.86797 * 120.00362 * 189.00706 * 18 16 15 21 21 H 1.48506 * 109.46993 * 94.44849 * 20 18 16 22 22 H 1.48497 * 109.47586 * 214.45044 * 20 18 16 23 23 H 1.48499 * 109.47089 * 334.45613 * 20 18 16 24 24 C 1.48142 * 104.32554 * 320.41189 * 15 14 12 25 25 C 1.53005 * 117.44403 * 115.75602 * 10 9 8 26 26 H 1.09003 * 119.53649 * 355.89043 * 25 10 9 27 27 C 1.32766 * 124.71099 * 179.69190 * 2 1 3 28 28 C 1.50701 * 123.45992 * 0.04096 * 27 2 1 29 29 H 1.08992 * 109.47191 * 0.02737 * 1 2 3 30 30 H 1.08997 * 109.47117 * 240.02542 * 1 2 3 31 31 H 1.09006 * 109.47008 * 120.02572 * 1 2 3 32 32 H 1.08001 * 124.59151 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00188 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.47345 * 299.99857 * 9 8 6 35 35 H 1.08993 * 109.47517 * 60.00213 * 9 8 6 36 36 H 1.09007 * 110.40752 * 205.97836 * 14 12 10 37 37 H 1.09000 * 110.40595 * 328.40505 * 14 12 10 38 38 H 0.96999 * 119.99337 * 179.97438 * 19 18 16 39 39 H 1.08998 * 110.40917 * 280.80516 * 24 15 14 40 40 H 1.09000 * 110.50924 * 158.41688 * 24 15 14 41 41 H 1.08997 * 109.47173 * 90.02126 * 28 27 2 42 42 H 1.09002 * 109.47016 * 210.01955 * 28 27 2 43 43 H 1.08993 * 109.47150 * 330.02140 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5064 1.4427 0.0000 4 6 3.9476 0.5328 0.0008 5 6 3.6777 -0.8002 0.0016 6 6 4.7201 -1.8395 0.0018 7 8 4.4072 -3.0148 0.0021 8 7 6.0214 -1.4886 0.0018 9 6 7.0589 -2.5228 0.0026 10 6 8.4385 -1.8613 0.0030 11 1 8.4923 -0.8871 -0.4829 12 6 9.6593 -2.7761 -0.1144 13 1 9.5164 -3.8467 -0.2615 14 6 10.9970 -2.1503 -0.5645 15 7 11.6234 -1.6664 0.6877 16 6 12.9447 -1.7236 1.0426 17 1 13.2348 -1.5687 2.0713 18 6 13.9114 -1.9808 0.0802 19 7 13.5838 -1.9936 -1.1946 20 14 15.6772 -2.3084 0.5941 21 1 15.8950 -3.7727 0.7116 22 1 16.6012 -1.7508 -0.4259 23 1 15.9391 -1.6624 1.9053 24 6 10.4960 -1.1069 1.4691 25 6 9.3289 -2.0880 1.2265 26 1 8.9399 -2.6461 2.0782 27 6 2.2630 -1.0914 0.0059 28 6 1.7027 -2.4903 0.0125 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5134 0.8902 31 1 -0.3633 -0.5143 -0.8898 32 1 4.9408 0.9572 0.0006 33 1 6.2710 -0.5512 0.0020 34 1 6.9534 -3.1426 0.8929 35 1 6.9537 -3.1437 -0.8869 36 1 11.6277 -2.9022 -1.0391 37 1 10.8173 -1.3187 -1.2458 38 1 14.2594 -2.1730 -1.8671 39 1 10.2381 -0.1123 1.1054 40 1 10.7472 -1.0699 2.5291 41 1 1.5685 -2.8328 -1.0135 42 1 2.3933 -3.1559 0.5304 43 1 0.7410 -2.4940 0.5254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978203330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:21 Heat of formation + Delta-G solvation = 25.500339 kcal Electronic energy + Delta-G solvation = -23510.624362 eV Core-core repulsion = 20068.992806 eV Total energy + Delta-G solvation = -3441.631555 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.16627 -40.33483 -38.43057 -36.37079 -35.10610 -33.45193 -32.55913 -30.29673 -29.10446 -28.84662 -27.06719 -26.07948 -24.89623 -22.86515 -21.89031 -21.05128 -20.82895 -19.52832 -18.85044 -18.53670 -17.91880 -16.95661 -16.57787 -16.41881 -16.03387 -15.44084 -15.34474 -15.11265 -14.81533 -14.63833 -14.48154 -14.14888 -13.90791 -13.60985 -13.49692 -13.33919 -13.19551 -12.92660 -12.90503 -12.78615 -12.73830 -12.63903 -12.31023 -11.99535 -11.94256 -11.78006 -11.73061 -11.07550 -10.87387 -10.71649 -10.55202 -10.12263 -9.59031 -9.24950 -8.92070 -7.92890 -5.29281 -0.22578 0.60030 0.94351 0.95171 1.45549 1.47369 1.56514 2.07549 2.30910 2.46572 2.72444 3.24891 3.59535 3.67271 3.73029 3.82708 3.92083 4.12711 4.18818 4.25454 4.33511 4.40240 4.44074 4.55065 4.63044 4.66236 4.72279 4.74640 4.85363 4.87150 4.92566 5.00608 5.01063 5.12839 5.19987 5.31828 5.33069 5.42676 5.44288 5.51773 5.63561 5.65387 6.17020 6.50196 7.00050 7.17871 7.67184 8.45362 9.20833 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.033941 B = 0.002101 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.763471 B =13325.000639 C =13774.710660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.215 4.215 3 S 0.233 5.767 4 C -0.212 4.212 5 C -0.176 4.176 6 C 0.573 3.427 7 O -0.572 6.572 8 N -0.710 5.710 9 C 0.165 3.835 10 C -0.109 4.109 11 H 0.110 0.890 12 C -0.176 4.176 13 H 0.113 0.887 14 C 0.189 3.811 15 N -0.621 5.621 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.064 4.064 19 N -0.947 5.947 20 Si 0.980 3.020 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.266 1.266 24 C 0.149 3.851 25 C -0.160 4.160 26 H 0.123 0.877 27 C -0.086 4.086 28 C -0.093 4.093 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.191 0.809 33 H 0.412 0.588 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.003 0.997 38 H 0.250 0.750 39 H 0.029 0.971 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.060 7.196 2.624 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.332 4.332 3 S 0.501 5.499 4 C -0.350 4.350 5 C -0.194 4.194 6 C 0.360 3.640 7 O -0.453 6.453 8 N -0.362 5.362 9 C 0.042 3.958 10 C -0.128 4.128 11 H 0.128 0.872 12 C -0.196 4.196 13 H 0.131 0.869 14 C 0.064 3.936 15 N -0.345 5.345 16 C -0.369 4.369 17 H 0.099 0.901 18 C -0.258 4.258 19 N -0.595 5.595 20 Si 0.808 3.192 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.190 1.190 24 C 0.024 3.976 25 C -0.180 4.180 26 H 0.141 0.859 27 C -0.096 4.096 28 C -0.152 4.152 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.208 0.792 33 H 0.249 0.751 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -28.295 7.938 2.570 29.500 hybrid contribution 2.094 -1.453 -0.136 2.552 sum -26.201 6.485 2.434 27.101 Atomic orbital electron populations 1.20414 0.85616 1.03976 1.03783 1.24557 1.01851 0.95623 1.11137 1.82844 0.92038 1.06762 1.68237 1.25939 1.06731 0.97050 1.05283 1.20066 0.93799 0.92771 1.12790 1.17932 0.82477 0.87973 0.75626 1.90722 1.82457 1.20224 1.51928 1.45757 1.04783 1.11048 1.74620 1.20674 0.83377 0.89587 1.02176 1.22402 0.89580 1.00241 1.00623 0.87232 1.23930 0.94586 0.98563 1.02542 0.86899 1.20796 0.89362 0.95504 0.87979 1.45534 1.03037 1.68143 1.17804 1.19393 0.81718 1.42264 0.93491 0.90148 1.25757 1.02168 1.02661 0.95219 1.70096 1.33820 1.55699 0.99905 0.85037 0.79102 0.77621 0.77412 1.21411 1.22016 1.19032 1.21290 0.86581 0.93971 0.95795 1.23933 0.99445 1.02639 0.91959 0.85877 1.19840 0.90396 0.97368 1.01986 1.20536 1.00981 0.91219 1.02447 0.89939 0.89732 0.89893 0.79228 0.75118 0.91317 0.91235 0.92907 0.97910 0.94126 0.95349 0.92489 0.91492 0.91644 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.46 71.24 0.67 -0.03 16 2 C -0.21 -3.22 6.44 24.51 0.16 -3.06 16 3 S 0.23 2.83 23.00 -56.49 -1.30 1.54 16 4 C -0.21 -3.28 10.38 67.30 0.70 -2.58 16 5 C -0.18 -3.80 5.98 -19.87 -0.12 -3.92 16 6 C 0.57 15.04 7.79 86.60 0.67 15.72 16 7 O -0.57 -18.83 14.21 -4.11 -0.06 -18.89 16 8 N -0.71 -15.97 5.52 -466.62 -2.58 -18.55 16 9 C 0.17 4.23 5.95 86.38 0.51 4.74 16 10 C -0.11 -3.12 5.39 -10.79 -0.06 -3.18 16 11 H 0.11 3.04 8.04 -2.39 -0.02 3.02 16 12 C -0.18 -6.51 6.85 -9.88 -0.07 -6.58 16 13 H 0.11 3.97 8.14 -2.38 -0.02 3.95 16 14 C 0.19 9.27 5.70 86.53 0.49 9.76 16 15 N -0.62 -32.06 3.38 -688.17 -2.33 -34.38 16 16 C -0.24 -13.49 10.35 84.03 0.87 -12.62 16 17 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16 18 C -0.06 -3.67 5.40 84.86 0.46 -3.21 16 19 N -0.95 -57.10 10.86 21.65 0.24 -56.87 16 20 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.15 6.01 7.04 86.53 0.61 6.61 16 25 C -0.16 -5.31 6.74 -9.88 -0.07 -5.37 16 26 H 0.12 3.65 8.12 -2.39 -0.02 3.63 16 27 C -0.09 -1.74 6.01 -19.46 -0.12 -1.85 16 28 C -0.09 -1.86 9.26 71.24 0.66 -1.20 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.64 7.94 -2.39 -0.02 0.62 16 31 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.19 1.99 7.01 -2.91 -0.02 1.97 16 33 H 0.41 7.07 6.90 -92.71 -0.64 6.44 16 34 H 0.07 1.83 7.94 -2.39 -0.02 1.81 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 2.96 6.51 -2.38 -0.02 2.94 16 37 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.66 6.04 -2.39 -0.01 1.64 16 43 H 0.08 1.20 7.38 -2.39 -0.02 1.18 16 Total: -1.00 -71.50 363.76 1.77 -69.73 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.39 Total: 16.55 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.38 Total: -6.77 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.67 Total: -109.80 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.06 Total: -18.89 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.30 Total: 1.54 kcal Total: -71.50 1.77 -69.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978203330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.228 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds