Wall clock time and date at job start Tue Mar 31 2020 12:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47603 * 2 1 4 4 C 1.33811 * 124.52438 * 89.99787 * 3 2 1 5 5 C 1.37465 * 115.10376 * 180.02562 * 4 3 2 6 6 C 1.36645 * 113.29950 * 359.97438 * 5 4 3 7 7 C 1.46586 * 125.46597 * 179.97438 * 6 5 4 8 8 O 1.21702 * 119.99486 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00518 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00228 * 180.27921 * 9 7 6 11 11 C 1.52998 * 109.47333 * 179.72609 * 10 9 7 12 12 H 1.09001 * 115.51330 * 330.41728 * 11 10 9 13 13 C 1.53004 * 117.44336 * 184.99751 * 11 10 9 14 14 H 1.08989 * 119.53641 * 4.11745 * 13 11 10 15 15 C 1.54389 * 118.11862 * 160.80749 * 13 11 10 16 16 N 1.48145 * 104.61683 * 87.19626 * 15 13 11 17 17 C 1.36940 * 127.84264 * 140.39285 * 16 15 13 18 18 H 1.07997 * 120.00410 * 195.59207 * 17 16 15 19 19 C 1.38813 * 119.99741 * 15.59199 * 17 16 15 20 20 N 1.31625 * 119.99894 * 9.09658 * 19 17 16 21 21 Si 1.86791 * 120.00062 * 189.09911 * 19 17 16 22 22 H 1.48500 * 109.47450 * 89.99525 * 21 19 17 23 23 H 1.48498 * 109.47287 * 209.99906 * 21 19 17 24 24 H 1.48506 * 109.47046 * 329.99917 * 21 19 17 25 25 C 1.48148 * 104.32186 * 320.40866 * 16 15 13 26 26 C 1.53004 * 117.44182 * 115.75595 * 11 10 9 27 27 H 1.08987 * 119.54401 * 355.88567 * 26 11 10 28 28 S 1.70623 * 124.52126 * 270.27213 * 3 2 1 29 29 H 1.09001 * 109.46973 * 300.00295 * 1 2 3 30 30 H 1.09002 * 109.46791 * 59.99448 * 1 2 3 31 31 H 1.08990 * 109.47279 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46973 * 239.99705 * 2 1 3 33 33 H 1.09005 * 109.46818 * 120.00019 * 2 1 3 34 34 H 1.08004 * 122.45099 * 359.97438 * 4 3 2 35 35 H 1.08002 * 123.35477 * 179.97438 * 5 4 3 36 36 H 0.97003 * 119.99889 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.46884 * 299.72491 * 10 9 7 38 38 H 1.08998 * 109.47118 * 59.72282 * 10 9 7 39 39 H 1.09006 * 110.40275 * 205.97206 * 15 13 11 40 40 H 1.08996 * 110.41228 * 328.40652 * 15 13 11 41 41 H 0.96994 * 119.99554 * 180.02562 * 20 19 17 42 42 H 1.08998 * 110.40875 * 280.80368 * 25 16 15 43 43 H 1.09002 * 110.50501 * 158.42441 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2853 2.1357 1.1025 5 6 2.7369 3.4144 0.8774 6 6 2.8464 3.7234 -0.4491 7 6 3.2999 5.0088 -0.9884 8 8 3.6172 5.9080 -0.2322 9 7 3.3654 5.1949 -2.3216 10 6 3.8245 6.4775 -2.8605 11 6 3.8108 6.4225 -4.3894 12 1 3.9770 5.4374 -4.8253 13 6 4.3698 7.6308 -5.1435 14 1 4.8170 8.4529 -4.5849 15 6 4.7857 7.4396 -6.6180 16 7 3.5440 7.6768 -7.3904 17 6 3.4089 8.3402 -8.5807 18 1 2.4324 8.6610 -8.9124 19 6 4.5270 8.6005 -9.3610 20 7 5.6861 8.0588 -9.0516 21 14 4.3869 9.7195 -10.8501 22 1 4.6524 11.1224 -10.4418 23 1 5.3787 9.3061 -11.8751 24 1 3.0180 9.6198 -11.4172 25 6 2.4815 7.0336 -6.5828 26 6 2.8505 7.3631 -5.1203 27 1 2.1660 7.9858 -4.5445 28 16 2.3486 2.3346 -1.4058 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1440 1.7376 2.0964 35 1 2.9810 4.1061 1.6702 36 1 3.1121 4.4783 -2.9244 37 1 3.1617 7.2729 -2.5196 38 1 4.8384 6.6755 -2.5131 39 1 5.5499 8.1660 -6.8945 40 1 5.1476 6.4247 -6.7824 41 1 6.4674 8.2410 -9.5966 42 1 2.4835 5.9553 -6.7416 43 1 1.5063 7.4519 -6.8322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978469082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:09 Heat of formation + Delta-G solvation = 44.233932 kcal Electronic energy + Delta-G solvation = -23202.282250 eV Core-core repulsion = 19761.463045 eV Total energy + Delta-G solvation = -3440.819206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.91845 -38.83673 -38.10711 -35.01843 -34.13316 -33.35392 -30.94405 -29.39960 -27.38968 -27.12172 -25.60641 -24.55916 -22.73323 -21.63372 -21.16072 -20.24042 -19.31762 -19.19193 -18.06927 -16.83796 -16.56333 -15.89464 -15.41936 -15.34350 -14.80345 -14.59321 -14.40040 -14.07127 -13.89600 -13.50179 -13.29309 -13.06965 -12.80803 -12.68677 -12.62790 -12.23488 -11.95162 -11.85458 -11.56525 -11.27460 -11.14435 -11.11532 -10.85105 -10.66374 -10.34035 -10.22122 -10.13674 -9.75399 -9.46870 -9.18146 -9.07401 -8.91059 -8.85571 -8.64753 -6.88091 -5.80902 -3.15332 0.22076 1.14300 1.56946 2.11055 3.00957 3.07368 3.37736 3.42988 3.44812 4.12170 4.23114 4.45352 4.56014 4.66196 4.79356 4.87952 4.93974 5.08736 5.24836 5.27653 5.37539 5.37843 5.43008 5.46140 5.48860 5.68584 5.71981 5.76741 5.84440 5.87551 5.91559 5.96119 6.06241 6.21488 6.28143 6.53949 6.64730 6.69209 6.90675 7.33192 7.35947 7.52054 7.70761 8.03384 8.19855 9.09958 9.72669 10.49657 11.33418 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025728 B = 0.002168 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.043509 B =12912.134619 C =13573.831550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.192 4.192 4 C -0.154 4.154 5 C -0.053 4.053 6 C -0.267 4.267 7 C 0.588 3.412 8 O -0.533 6.533 9 N -0.719 5.719 10 C 0.156 3.844 11 C -0.152 4.152 12 H 0.103 0.897 13 C -0.160 4.160 14 H 0.104 0.896 15 C 0.184 3.816 16 N -0.594 5.594 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.154 3.846 26 C -0.171 4.171 27 H 0.103 0.897 28 S 0.205 5.795 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.399 0.601 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.024 0.976 41 H 0.254 0.746 42 H 0.024 0.976 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -16.096 19.656 26.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.312 4.312 4 C -0.185 4.185 5 C -0.086 4.086 6 C -0.387 4.387 7 C 0.374 3.626 8 O -0.412 6.412 9 N -0.370 5.370 10 C 0.033 3.967 11 C -0.171 4.171 12 H 0.121 0.879 13 C -0.181 4.181 14 H 0.122 0.878 15 C 0.058 3.942 16 N -0.318 5.318 17 C -0.355 4.355 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.562 5.562 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.027 3.973 26 C -0.191 4.191 27 H 0.121 0.879 28 S 0.473 5.527 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.042 0.958 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.628 -15.610 18.340 25.263 hybrid contribution -0.026 0.483 0.633 0.797 sum -7.654 -15.127 18.973 25.444 Atomic orbital electron populations 1.21810 0.93956 1.02267 1.02696 1.20171 0.96451 0.89324 1.03624 1.24289 1.06970 1.02108 0.97829 1.19946 1.04867 0.94117 0.99577 1.20742 0.96477 0.96197 0.95196 1.24620 1.16485 0.99470 0.98149 1.16942 0.77710 0.85624 0.82298 1.90831 1.49480 1.42796 1.58090 1.45921 1.67724 1.17267 1.06084 1.20926 1.00090 0.84242 0.91472 1.22530 1.06104 0.96925 0.91544 0.87912 1.24242 0.96972 0.97329 0.99513 0.87805 1.21071 0.90680 0.99619 0.82838 1.45209 1.02151 1.62745 1.21681 1.19004 0.94210 1.28194 0.94102 0.90559 1.24905 0.96206 1.00673 0.98551 1.69898 0.99839 1.45837 1.40613 0.86102 0.77222 0.80364 0.81963 1.21485 1.21654 1.20545 1.21139 0.93227 0.95439 0.87447 1.24006 0.93826 1.02903 0.98375 0.87861 1.83082 1.59659 1.02478 1.07508 0.92166 0.92255 0.91795 0.90488 0.89762 0.83902 0.82983 0.76668 0.91101 0.90780 0.89140 0.95838 0.93545 0.95840 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.90 37.16 0.37 -0.37 16 2 C -0.06 -0.30 6.36 -27.88 -0.18 -0.48 16 3 C -0.19 -1.47 5.53 -35.86 -0.20 -1.67 16 4 C -0.15 -1.24 9.99 -41.42 -0.41 -1.66 16 5 C -0.05 -0.53 10.01 -40.44 -0.40 -0.94 16 6 C -0.27 -3.00 6.45 -36.79 -0.24 -3.24 16 7 C 0.59 8.13 7.78 -12.90 -0.10 8.03 16 8 O -0.53 -9.13 16.84 5.19 0.09 -9.04 16 9 N -0.72 -9.03 5.55 -61.65 -0.34 -9.37 16 10 C 0.16 2.15 5.95 -4.04 -0.02 2.13 16 11 C -0.15 -2.33 5.39 -90.62 -0.49 -2.82 16 12 H 0.10 1.56 8.04 -51.93 -0.42 1.14 16 13 C -0.16 -3.00 6.85 -89.21 -0.61 -3.61 16 14 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 15 C 0.18 4.37 5.70 -2.41 -0.01 4.36 16 16 N -0.59 -15.16 3.38 -168.86 -0.57 -15.73 16 17 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 18 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 19 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 20 N -0.92 -26.71 10.87 55.49 0.60 -26.11 16 21 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 C 0.15 3.18 7.04 -2.41 -0.02 3.17 16 26 C -0.17 -3.00 6.74 -89.21 -0.60 -3.60 16 27 H 0.10 1.68 8.12 -51.94 -0.42 1.26 16 28 S 0.20 1.75 22.10 -107.50 -2.38 -0.63 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.40 4.25 7.52 -40.82 -0.31 3.95 16 37 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -32.03 370.90 -11.72 -43.75 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.52 Total: 2.12 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -3.17 Total: -7.45 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.31 Total: -51.21 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.38 Total: -0.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.03 -11.72 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978469082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.988 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds