Wall clock time and date at job start Tue Mar 31 2020 12:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32766 * 123.45872 * 2 1 4 4 S 1.75505 * 110.57543 * 180.02562 * 3 2 1 5 5 C 1.70447 * 92.44578 * 359.81723 * 4 3 2 6 6 C 1.36012 * 110.81774 * 0.31883 * 5 4 3 7 7 C 1.47185 * 123.46313 * 179.89114 * 6 5 4 8 8 O 1.21637 * 120.00026 * 186.43455 * 7 6 5 9 9 N 1.34771 * 120.00286 * 6.43154 * 7 6 5 10 10 C 1.47677 * 134.45310 * 355.99874 * 9 7 6 11 11 C 1.53457 * 85.96648 * 155.67821 * 10 9 7 12 12 C 1.47674 * 134.45496 * 175.93662 * 9 7 6 13 13 C 1.52631 * 113.67574 * 268.79919 * 11 10 9 14 14 C 1.53181 * 109.34541 * 286.01873 * 13 11 10 15 15 C 1.53135 * 109.36105 * 300.95202 * 14 13 11 16 16 N 1.46901 * 109.10392 * 56.43075 * 15 14 13 17 17 C 1.36936 * 120.68793 * 124.64080 * 16 15 14 18 18 H 1.07997 * 120.00387 * 333.73733 * 17 16 15 19 19 C 1.38814 * 119.99580 * 153.73471 * 17 16 15 20 20 N 1.31624 * 120.00168 * 344.79002 * 19 17 16 21 21 Si 1.86799 * 119.99786 * 164.79056 * 19 17 16 22 22 H 1.48497 * 109.47609 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47250 * 120.00183 * 21 19 17 24 24 H 1.48504 * 109.47004 * 239.99986 * 21 19 17 25 25 C 1.47122 * 118.61549 * 304.66379 * 16 15 14 26 26 H 1.09004 * 109.46844 * 269.97759 * 1 2 3 27 27 H 1.09000 * 109.47112 * 29.97234 * 1 2 3 28 28 H 1.09000 * 109.47065 * 149.97886 * 1 2 3 29 29 H 1.07997 * 124.71650 * 0.05346 * 3 2 1 30 30 H 1.07998 * 124.59629 * 180.21060 * 5 4 3 31 31 H 1.09005 * 113.79034 * 41.41592 * 10 9 7 32 32 H 1.08997 * 113.79271 * 269.94640 * 10 9 7 33 33 H 1.09004 * 113.78797 * 90.06269 * 12 9 7 34 34 H 1.08994 * 113.90268 * 318.60872 * 12 9 7 35 35 H 1.09004 * 109.49035 * 45.98549 * 13 11 10 36 36 H 1.08998 * 109.49150 * 166.05745 * 13 11 10 37 37 H 1.08998 * 109.49262 * 180.98087 * 14 13 11 38 38 H 1.09004 * 109.48505 * 60.91596 * 14 13 11 39 39 H 1.09002 * 109.52739 * 296.54496 * 15 14 13 40 40 H 1.08997 * 109.53279 * 176.32436 * 15 14 13 41 41 H 0.96996 * 119.99670 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.64123 * 291.71421 * 25 16 15 43 43 H 1.09001 * 109.80666 * 171.19364 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9499 0.7163 -0.0007 5 6 3.6411 -0.9599 0.0044 6 6 2.3033 -1.2050 -0.0005 7 6 1.7262 -2.5590 -0.0001 8 8 0.5253 -2.7084 -0.1228 9 7 2.5284 -3.6334 0.1360 10 6 3.9893 -3.8282 0.2284 11 6 3.6595 -5.1359 0.9606 12 6 2.2986 -5.0874 0.2536 13 6 3.5699 -4.9837 2.4766 14 6 4.9795 -4.8259 3.0550 15 6 5.8179 -6.0546 2.6914 16 7 5.8216 -6.2193 1.2317 17 6 7.0009 -6.2829 0.5386 18 1 7.8870 -5.8105 0.9359 19 6 7.0573 -6.9546 -0.6749 20 7 6.0866 -7.7742 -1.0192 21 14 8.5107 -6.6953 -1.8193 22 1 9.4595 -5.7326 -1.2043 23 1 9.1992 -7.9913 -2.0466 24 1 8.0293 -6.1563 -3.1166 25 6 4.5320 -6.3141 0.5300 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 1.8375 2.1102 0.0008 30 1 4.4043 -1.7240 0.0090 31 1 4.4928 -3.0898 0.8524 32 1 4.4753 -3.9747 -0.7361 33 1 2.2815 -5.6087 -0.7035 34 1 1.4592 -5.3513 0.8969 35 1 2.9763 -4.1022 2.7192 36 1 3.0985 -5.8688 2.9038 37 1 4.9195 -4.7344 4.1395 38 1 5.4450 -3.9321 2.6396 39 1 5.3866 -6.9408 3.1571 40 1 6.8396 -5.9164 3.0452 41 1 6.1263 -8.2438 -1.8670 42 1 4.0395 -7.2501 0.7934 43 1 4.6939 -6.2757 -0.5472 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981695101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:12 Heat of formation + Delta-G solvation = 56.061557 kcal Electronic energy + Delta-G solvation = -25452.273401 eV Core-core repulsion = 22011.967079 eV Total energy + Delta-G solvation = -3440.306322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61565 -38.74727 -36.87286 -35.78336 -32.94227 -31.71022 -30.14550 -29.78875 -27.76941 -26.24980 -25.83708 -25.42577 -23.66723 -22.30833 -20.91567 -19.96486 -18.44263 -18.10821 -17.41592 -16.83630 -16.46875 -15.64222 -15.36893 -14.69728 -14.29314 -14.16046 -13.94100 -13.69312 -13.40761 -13.23265 -13.14889 -12.90295 -12.65412 -12.57487 -12.33511 -12.11137 -11.91353 -11.83893 -11.61603 -11.25007 -11.03570 -10.92854 -10.80975 -10.51689 -10.31955 -10.19873 -9.96882 -9.77105 -9.52976 -9.33488 -8.96844 -8.56900 -8.52496 -8.27001 -6.76645 -5.86746 -3.28480 0.75322 1.49724 1.86452 1.97472 3.06032 3.31128 3.40209 3.41199 3.48825 4.41089 4.58141 4.66829 4.83061 5.09197 5.18875 5.22759 5.33108 5.39211 5.45780 5.51710 5.63502 5.68224 5.71593 5.73598 5.79107 5.87104 5.91498 5.93095 6.03544 6.13879 6.17163 6.24878 6.33467 6.46970 6.51138 6.56625 6.69555 6.79037 6.92279 7.19758 7.53242 7.71640 7.96490 8.34687 8.38113 9.12758 9.75824 10.32100 11.21723 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.004067 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.977592 B = 6883.054541 C = 7480.938352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.051 4.051 3 C -0.250 4.250 4 S 0.171 5.829 5 C -0.212 4.212 6 C -0.147 4.147 7 C 0.594 3.406 8 O -0.548 6.548 9 N -0.633 5.633 10 C 0.114 3.886 11 C -0.110 4.110 12 C 0.119 3.881 13 C -0.084 4.084 14 C -0.133 4.133 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.905 5.905 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.188 3.812 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.166 0.834 30 H 0.181 0.819 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.053 0.947 41 H 0.254 0.746 42 H 0.025 0.975 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 14.321 3.679 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.062 4.062 3 C -0.384 4.384 4 S 0.439 5.561 5 C -0.349 4.349 6 C -0.165 4.165 7 C 0.383 3.617 8 O -0.428 6.428 9 N -0.367 5.367 10 C -0.008 4.008 11 C -0.112 4.112 12 C -0.003 4.003 13 C -0.121 4.121 14 C -0.172 4.172 15 C 0.018 3.982 16 N -0.313 5.313 17 C -0.379 4.379 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.549 5.549 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.062 3.938 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.184 0.816 30 H 0.198 0.802 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.541 15.191 3.443 16.533 hybrid contribution -0.399 -0.776 -0.703 1.121 sum -5.940 14.415 2.740 15.830 Atomic orbital electron populations 1.20672 0.88832 1.03776 1.02742 1.19871 0.97460 0.89906 0.98995 1.25259 0.96490 1.02425 1.14250 1.82985 1.05670 0.97473 1.70021 1.26275 1.00451 1.02696 1.05516 1.20164 0.92077 0.94195 1.10073 1.17227 0.85457 0.82719 0.76266 1.90693 1.14442 1.86026 1.51631 1.50081 1.08997 1.06515 1.71129 1.23449 0.80147 0.96581 1.00618 1.22828 0.95003 0.98047 0.95361 1.23235 0.98271 0.78396 1.00404 1.21106 0.97176 1.00708 0.93158 1.22018 0.95956 1.00674 0.98603 1.20887 0.97379 0.93753 0.86171 1.44054 1.02218 1.84977 1.00091 1.19241 0.88894 1.27529 1.02235 0.91465 1.25003 0.97792 0.96610 1.00209 1.69991 1.33555 1.28463 1.22939 0.86261 0.82213 0.77587 0.80970 1.20275 1.21691 1.21575 1.20749 0.83571 0.90458 0.99052 0.91257 0.92059 0.88687 0.81649 0.80191 0.90400 0.88969 0.89417 0.90515 0.93317 0.91989 0.92959 0.92511 0.96350 0.92831 0.93580 0.95672 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.63 36.01 0.35 -0.88 16 2 C -0.05 -0.68 6.01 -104.06 -0.62 -1.30 16 3 C -0.25 -2.71 10.91 28.86 0.31 -2.40 16 4 S 0.17 1.81 23.02 -107.50 -2.48 -0.67 16 5 C -0.21 -2.79 9.97 29.93 0.30 -2.49 16 6 C -0.15 -2.21 5.98 -104.63 -0.63 -2.84 16 7 C 0.59 10.29 8.01 -12.63 -0.10 10.19 16 8 O -0.55 -10.66 14.93 5.24 0.08 -10.58 16 9 N -0.63 -10.44 3.45 -181.84 -0.63 -11.07 16 10 C 0.11 1.83 5.87 -3.17 -0.02 1.82 16 11 C -0.11 -1.87 0.87 -154.44 -0.13 -2.00 16 12 C 0.12 1.94 7.98 -3.18 -0.03 1.91 16 13 C -0.08 -1.32 5.02 -26.83 -0.13 -1.46 16 14 C -0.13 -2.12 6.00 -26.57 -0.16 -2.28 16 15 C 0.14 2.78 6.46 -3.75 -0.02 2.75 16 16 N -0.59 -13.43 3.01 -172.46 -0.52 -13.95 16 17 C -0.25 -6.31 9.62 -15.06 -0.14 -6.45 16 18 H 0.07 1.69 7.87 -52.49 -0.41 1.27 16 19 C 0.00 0.06 4.98 -17.43 -0.09 -0.03 16 20 N -0.90 -24.57 10.99 55.49 0.61 -23.96 16 21 Si 0.90 20.56 29.58 -169.99 -5.03 15.53 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 25 C 0.19 4.00 4.42 -3.81 -0.02 3.99 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.09 1.38 5.89 -51.93 -0.31 1.07 16 29 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.18 2.33 4.54 -52.49 -0.24 2.09 16 31 H 0.08 1.17 5.42 -51.93 -0.28 0.89 16 32 H 0.09 1.56 7.98 -51.93 -0.41 1.15 16 33 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 34 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 35 H 0.05 0.75 8.02 -51.93 -0.42 0.33 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.92 7.36 -51.93 -0.38 0.53 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 41 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 2.30 5.84 -51.93 -0.30 1.99 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -28.88 350.28 -9.92 -38.80 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.10 Total: 2.09 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.14 Total: -1.47 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.54 Total: -48.98 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.48 Total: -0.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.88 -9.92 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981695101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.860 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds