Wall clock time and date at job start Tue Mar 31 2020 12:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37478 * 123.34679 * 2 1 4 4 C 1.33818 * 115.09399 * 180.02562 * 3 2 1 5 5 S 1.70609 * 110.95849 * 359.73301 * 4 3 2 6 6 C 1.36647 * 123.35412 * 180.02562 * 2 1 3 7 7 C 1.46583 * 125.45791 * 359.97438 * 6 2 1 8 8 O 1.21707 * 119.99940 * 0.02562 * 7 6 2 9 9 N 1.34769 * 120.00180 * 180.02562 * 7 6 2 10 10 C 1.46501 * 120.00179 * 180.02562 * 9 7 6 11 11 C 1.53578 * 112.23972 * 300.34748 * 10 9 7 12 12 C 1.54231 * 106.67599 * 238.82764 * 11 10 9 13 13 C 1.55952 * 104.70799 * 335.63797 * 12 11 10 14 14 C 1.54778 * 102.65816 * 36.68253 * 13 12 11 15 15 H 1.08999 * 111.86498 * 86.52802 * 14 13 12 16 16 N 1.46974 * 108.68938 * 210.47045 * 14 13 12 17 17 C 1.36943 * 125.58354 * 295.08765 * 16 14 13 18 18 H 1.08004 * 119.99147 * 13.43982 * 17 16 14 19 19 C 1.38803 * 120.00281 * 193.43383 * 17 16 14 20 20 N 1.31614 * 120.00472 * 204.06009 * 19 17 16 21 21 Si 1.86799 * 120.00009 * 24.33840 * 19 17 16 22 22 H 1.48499 * 109.47267 * 269.72388 * 21 19 17 23 23 H 1.48509 * 109.47080 * 29.72345 * 21 19 17 24 24 H 1.48498 * 109.47509 * 149.71962 * 21 19 17 25 25 C 1.47372 * 108.84352 * 115.34652 * 16 14 13 26 26 C 1.54907 * 112.78066 * 64.05992 * 10 9 7 27 27 H 1.08996 * 109.47150 * 269.97197 * 1 2 3 28 28 H 1.08995 * 109.46980 * 29.97232 * 1 2 3 29 29 H 1.09002 * 109.47032 * 149.97421 * 1 2 3 30 30 H 1.08000 * 122.45097 * 0.02562 * 3 2 1 31 31 H 1.08008 * 124.51574 * 180.02562 * 4 3 2 32 32 H 0.97002 * 119.99985 * 359.97438 * 9 7 6 33 33 H 1.09003 * 110.01979 * 358.12980 * 11 10 9 34 34 H 1.09000 * 110.01887 * 119.48084 * 11 10 9 35 35 H 1.08999 * 110.48896 * 93.72894 * 12 11 10 36 36 H 1.08994 * 110.49044 * 216.25690 * 12 11 10 37 37 H 1.09004 * 110.35313 * 278.70046 * 13 12 11 38 38 H 1.08992 * 111.51332 * 155.19539 * 13 12 11 39 39 H 0.97006 * 119.99614 * 354.84336 * 20 19 17 40 40 H 1.09000 * 110.36920 * 93.87736 * 25 16 14 41 41 H 1.08997 * 110.37264 * 216.21455 * 25 16 14 42 42 H 1.09005 * 110.97233 * 204.56333 * 26 10 9 43 43 H 1.09001 * 110.97351 * 328.29482 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9564 -0.0005 5 16 3.9623 -0.7079 0.0063 6 6 2.2583 -1.1414 -0.0005 7 6 1.7285 -2.5081 -0.0006 8 8 0.5258 -2.6946 -0.0006 9 7 2.5732 -3.5583 -0.0006 10 6 2.0437 -4.9243 -0.0012 11 6 1.1635 -5.2070 1.2251 12 6 1.8073 -6.3958 1.9674 13 6 2.6244 -7.1498 0.8738 14 6 3.1671 -5.9942 -0.0012 15 1 4.1061 -5.5984 0.3858 16 7 3.3055 -6.4748 -1.3832 17 6 4.1652 -7.4543 -1.8040 18 1 4.6545 -8.0902 -1.0810 19 6 4.4075 -7.6297 -3.1594 20 7 4.8180 -8.7966 -3.6089 21 14 4.1585 -6.2075 -4.3445 22 1 2.7628 -6.2241 -4.8514 23 1 4.4140 -4.9254 -3.6399 24 1 5.1007 -6.3421 -5.4844 25 6 2.3721 -5.7259 -2.2433 26 6 1.2449 -5.2573 -1.2860 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.8200 2.1335 0.0004 31 1 4.3205 1.7492 -0.0002 32 1 3.5318 -3.4097 -0.0009 33 1 1.1363 -4.3321 1.8746 34 1 0.1537 -5.4673 0.9076 35 1 2.4789 -6.0394 2.7484 36 1 1.0390 -7.0420 2.3917 37 1 1.9700 -7.7987 0.2916 38 1 3.4445 -7.7201 1.3098 39 1 5.0230 -9.5115 -2.9860 40 1 2.8739 -4.8682 -2.6912 41 1 1.9654 -6.3759 -3.0181 42 1 0.5264 -6.0563 -1.1026 43 1 0.7470 -4.3699 -1.6769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989909400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:49 Heat of formation + Delta-G solvation = 21.816672 kcal Electronic energy + Delta-G solvation = -25662.391072 eV Core-core repulsion = 22220.599780 eV Total energy + Delta-G solvation = -3441.791291 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43862 -38.90458 -37.50430 -34.44789 -33.57897 -31.92473 -31.08168 -30.09145 -28.29913 -27.06623 -26.09842 -23.74182 -23.29098 -22.11983 -20.73518 -20.12959 -19.21532 -18.41505 -18.08652 -17.42455 -16.27713 -15.66620 -15.31250 -15.27063 -14.90392 -14.34131 -14.08891 -13.74349 -13.54946 -13.40424 -13.25683 -13.06951 -12.74627 -12.49959 -12.26482 -12.00017 -11.88758 -11.80230 -11.58110 -11.17139 -11.03755 -10.87711 -10.79185 -10.71023 -10.22749 -10.17471 -10.01146 -9.62753 -9.56622 -9.24726 -9.03110 -8.71497 -8.60600 -8.48486 -7.08611 -6.30473 -3.20370 0.38408 1.33673 1.73064 2.23308 3.19273 3.25289 3.43642 3.51690 3.66824 4.59390 4.59783 4.67267 4.87971 4.91421 5.04433 5.13795 5.16360 5.22389 5.40936 5.50348 5.56801 5.62851 5.68841 5.73271 5.75582 5.85449 5.93614 5.97300 6.02924 6.10096 6.17778 6.25548 6.27503 6.37297 6.40956 6.46934 6.59317 6.65669 6.74767 6.88870 6.99288 7.60685 7.73147 8.28103 8.34974 9.04488 9.59664 10.26663 11.17004 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.004695 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.596393 B = 5962.245372 C = 6884.649190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.025 4.025 3 C -0.149 4.149 4 C -0.231 4.231 5 S 0.198 5.802 6 C -0.269 4.269 7 C 0.591 3.409 8 O -0.523 6.523 9 N -0.703 5.703 10 C 0.162 3.838 11 C -0.109 4.109 12 C -0.125 4.125 13 C -0.124 4.124 14 C 0.161 3.839 15 H 0.050 0.950 16 N -0.601 5.601 17 C -0.324 4.324 18 H 0.076 0.924 19 C -0.018 4.018 20 N -0.922 5.922 21 Si 1.063 2.937 22 H -0.295 1.295 23 H -0.288 1.288 24 H -0.300 1.300 25 C 0.104 3.896 26 C -0.127 4.127 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.168 0.832 32 H 0.397 0.603 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.262 0.738 40 H 0.029 0.971 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 18.454 10.546 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.040 4.040 3 C -0.181 4.181 4 C -0.369 4.369 5 S 0.467 5.533 6 C -0.390 4.390 7 C 0.378 3.622 8 O -0.402 6.402 9 N -0.353 5.353 10 C 0.076 3.924 11 C -0.148 4.148 12 C -0.163 4.163 13 C -0.164 4.164 14 C 0.053 3.947 15 H 0.067 0.933 16 N -0.326 5.326 17 C -0.451 4.451 18 H 0.094 0.906 19 C -0.219 4.219 20 N -0.563 5.563 21 Si 0.895 3.105 22 H -0.222 1.222 23 H -0.215 1.215 24 H -0.228 1.228 25 C -0.021 4.021 26 C -0.166 4.166 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.161 0.839 31 H 0.185 0.815 32 H 0.232 0.768 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.435 17.805 8.903 20.395 hybrid contribution -0.557 0.807 1.565 1.846 sum -4.992 18.612 10.467 21.929 Atomic orbital electron populations 1.20724 0.88679 1.03915 1.02925 1.19519 0.97885 0.90328 0.96277 1.19924 0.92574 0.99628 1.05957 1.25258 1.00680 1.01914 1.09013 1.83203 1.04283 0.98085 1.67771 1.24538 0.97144 0.97664 1.19629 1.16854 0.86324 0.82559 0.76510 1.90757 1.14084 1.85140 1.50189 1.45829 1.09404 1.05445 1.74647 1.21624 0.94950 0.79874 0.95989 1.22238 0.98809 0.98083 0.95638 1.22570 0.98998 0.96798 0.97972 1.23048 0.99159 0.98031 0.96205 1.21823 0.93998 0.90973 0.87944 0.93277 1.44850 1.43226 1.42783 1.01781 1.20009 1.23356 1.08088 0.93638 0.90622 1.25807 0.99126 1.01354 0.95574 1.70907 1.47607 1.01393 1.36372 0.83866 0.75649 0.75480 0.75489 1.22243 1.21477 1.22788 1.22110 0.90244 0.95216 0.94538 1.23116 0.97433 1.01060 0.95040 0.90823 0.91868 0.88686 0.83910 0.81478 0.76804 0.91936 0.90890 0.92326 0.91977 0.90731 0.91974 0.92715 0.95321 0.92087 0.90222 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.55 36.01 0.34 -0.79 16 2 C -0.03 -0.30 5.90 -105.47 -0.62 -0.92 16 3 C -0.15 -1.44 9.97 -41.41 -0.41 -1.85 16 4 C -0.23 -2.08 10.92 29.18 0.32 -1.76 16 5 S 0.20 2.10 22.16 -107.50 -2.38 -0.28 16 6 C -0.27 -3.56 6.45 -36.79 -0.24 -3.80 16 7 C 0.59 9.14 6.94 -12.90 -0.09 9.05 16 8 O -0.52 -8.96 12.12 5.18 0.06 -8.90 16 9 N -0.70 -11.00 5.24 -46.67 -0.24 -11.24 16 10 C 0.16 2.76 0.74 -129.38 -0.10 2.66 16 11 C -0.11 -1.66 5.24 -25.79 -0.14 -1.80 16 12 C -0.13 -1.80 6.85 -24.51 -0.17 -1.96 16 13 C -0.12 -2.20 6.33 -24.22 -0.15 -2.36 16 14 C 0.16 3.11 3.61 -65.60 -0.24 2.87 16 15 H 0.05 0.95 7.97 -51.93 -0.41 0.54 16 16 N -0.60 -14.21 2.90 -160.96 -0.47 -14.68 16 17 C -0.32 -8.96 10.15 -15.06 -0.15 -9.12 16 18 H 0.08 2.21 8.06 -52.48 -0.42 1.78 16 19 C -0.02 -0.52 5.42 -17.44 -0.09 -0.62 16 20 N -0.92 -28.59 13.70 55.49 0.76 -27.83 16 21 Si 1.06 26.82 24.69 -169.99 -4.20 22.62 16 22 H -0.29 -7.16 6.62 56.52 0.37 -6.78 16 23 H -0.29 -6.89 6.19 56.52 0.35 -6.54 16 24 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 25 C 0.10 2.30 4.70 -2.44 -0.01 2.29 16 26 C -0.13 -2.37 5.80 -24.60 -0.14 -2.51 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.25 6.01 -51.93 -0.31 0.93 16 30 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.40 5.77 7.60 -40.82 -0.31 5.46 16 33 H 0.06 0.95 7.40 -51.93 -0.38 0.56 16 34 H 0.07 1.12 7.37 -51.93 -0.38 0.74 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.26 8.04 8.73 -40.82 -0.36 7.69 16 40 H 0.03 0.66 5.60 -51.93 -0.29 0.37 16 41 H 0.06 1.45 6.20 -51.93 -0.32 1.13 16 42 H 0.08 1.44 7.62 -51.93 -0.40 1.04 16 43 H 0.07 1.37 6.84 -51.93 -0.36 1.01 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -31.55 343.63 -9.38 -40.93 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.20 Total: 4.80 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.89 Total: -10.60 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.05 Total: -53.75 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.06 Total: -8.90 kcal Atomic # 14 Polarization: 26.82 SS G_CDS: -4.20 Total: 22.62 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.38 Total: -0.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.55 -9.38 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989909400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.749 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds