Wall clock time and date at job start Tue Mar 31 2020 12:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37478 * 123.34679 * 2 1 4 4 C 1.33818 * 115.09399 * 180.02562 * 3 2 1 5 5 S 1.70609 * 110.95849 * 359.73301 * 4 3 2 6 6 C 1.36647 * 123.35412 * 180.02562 * 2 1 3 7 7 C 1.46583 * 125.45791 * 359.97438 * 6 2 1 8 8 O 1.21707 * 119.99940 * 0.02562 * 7 6 2 9 9 N 1.34769 * 120.00180 * 180.02562 * 7 6 2 10 10 C 1.46501 * 120.00179 * 180.02562 * 9 7 6 11 11 C 1.53578 * 112.23972 * 300.34748 * 10 9 7 12 12 C 1.54231 * 106.67599 * 238.82764 * 11 10 9 13 13 C 1.55952 * 104.70799 * 335.63797 * 12 11 10 14 14 C 1.54778 * 102.65816 * 36.68253 * 13 12 11 15 15 H 1.08999 * 111.86498 * 86.52802 * 14 13 12 16 16 N 1.46974 * 108.68938 * 210.47045 * 14 13 12 17 17 C 1.36943 * 125.58354 * 295.08765 * 16 14 13 18 18 H 1.08004 * 119.99147 * 13.43982 * 17 16 14 19 19 C 1.38803 * 120.00281 * 193.43383 * 17 16 14 20 20 N 1.31614 * 120.00472 * 204.06009 * 19 17 16 21 21 Si 1.86799 * 120.00009 * 24.33840 * 19 17 16 22 22 H 1.48499 * 109.47267 * 269.72388 * 21 19 17 23 23 H 1.48509 * 109.47080 * 29.72345 * 21 19 17 24 24 H 1.48498 * 109.47509 * 149.71962 * 21 19 17 25 25 C 1.47372 * 108.84352 * 115.34652 * 16 14 13 26 26 C 1.54907 * 112.78066 * 64.05992 * 10 9 7 27 27 H 1.08996 * 109.47150 * 269.97197 * 1 2 3 28 28 H 1.08995 * 109.46980 * 29.97232 * 1 2 3 29 29 H 1.09002 * 109.47032 * 149.97421 * 1 2 3 30 30 H 1.08000 * 122.45097 * 0.02562 * 3 2 1 31 31 H 1.08008 * 124.51574 * 180.02562 * 4 3 2 32 32 H 0.97002 * 119.99985 * 359.97438 * 9 7 6 33 33 H 1.09003 * 110.01979 * 358.12980 * 11 10 9 34 34 H 1.09000 * 110.01887 * 119.48084 * 11 10 9 35 35 H 1.08999 * 110.48896 * 93.72894 * 12 11 10 36 36 H 1.08994 * 110.49044 * 216.25690 * 12 11 10 37 37 H 1.09004 * 110.35313 * 278.70046 * 13 12 11 38 38 H 1.08992 * 111.51332 * 155.19539 * 13 12 11 39 39 H 0.97006 * 119.99614 * 354.84336 * 20 19 17 40 40 H 1.09000 * 110.36920 * 93.87736 * 25 16 14 41 41 H 1.08997 * 110.37264 * 216.21455 * 25 16 14 42 42 H 1.09005 * 110.97233 * 204.56333 * 26 10 9 43 43 H 1.09001 * 110.97351 * 328.29482 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9564 -0.0005 5 16 3.9623 -0.7079 0.0063 6 6 2.2583 -1.1414 -0.0005 7 6 1.7285 -2.5081 -0.0006 8 8 0.5258 -2.6946 -0.0006 9 7 2.5732 -3.5583 -0.0006 10 6 2.0437 -4.9243 -0.0012 11 6 1.1635 -5.2070 1.2251 12 6 1.8073 -6.3958 1.9674 13 6 2.6244 -7.1498 0.8738 14 6 3.1671 -5.9942 -0.0012 15 1 4.1061 -5.5984 0.3858 16 7 3.3055 -6.4748 -1.3832 17 6 4.1652 -7.4543 -1.8040 18 1 4.6545 -8.0902 -1.0810 19 6 4.4075 -7.6297 -3.1594 20 7 4.8180 -8.7966 -3.6089 21 14 4.1585 -6.2075 -4.3445 22 1 2.7628 -6.2241 -4.8514 23 1 4.4140 -4.9254 -3.6399 24 1 5.1007 -6.3421 -5.4844 25 6 2.3721 -5.7259 -2.2433 26 6 1.2449 -5.2573 -1.2860 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.8200 2.1335 0.0004 31 1 4.3205 1.7492 -0.0002 32 1 3.5318 -3.4097 -0.0009 33 1 1.1363 -4.3321 1.8746 34 1 0.1537 -5.4673 0.9076 35 1 2.4789 -6.0394 2.7484 36 1 1.0390 -7.0420 2.3917 37 1 1.9700 -7.7987 0.2916 38 1 3.4445 -7.7201 1.3098 39 1 5.0230 -9.5115 -2.9860 40 1 2.8739 -4.8682 -2.6912 41 1 1.9654 -6.3759 -3.0181 42 1 0.5264 -6.0563 -1.1026 43 1 0.7470 -4.3699 -1.6769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989909400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:48 Heat of formation + Delta-G solvation = 1.819950 kcal Electronic energy + Delta-G solvation = -25663.258195 eV Core-core repulsion = 22220.599780 eV Total energy + Delta-G solvation = -3442.658414 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76527 -40.06463 -38.54022 -36.18504 -34.84420 -33.91112 -32.06530 -31.53846 -29.36167 -28.69411 -27.46397 -25.18943 -24.57711 -23.37815 -22.27666 -21.47368 -20.46505 -19.67965 -19.51402 -18.90420 -17.66301 -16.84620 -16.73062 -16.43658 -16.13818 -15.82167 -15.61596 -15.13270 -14.95246 -14.70318 -14.47584 -14.36846 -14.06815 -13.60784 -13.45269 -13.33830 -13.11276 -13.01018 -12.84111 -12.68592 -12.63142 -12.38212 -12.03758 -11.86440 -11.83347 -11.69868 -11.56526 -11.46042 -11.19145 -10.82695 -10.62993 -10.15894 -9.74251 -9.40337 -9.14173 -8.58177 -5.41741 -0.46641 0.52113 0.95708 1.38706 1.41754 1.48185 1.64892 2.02356 2.16438 2.50565 3.03042 3.20406 3.37360 3.70411 3.81415 3.84182 3.99204 4.18906 4.19372 4.26231 4.33027 4.39267 4.42185 4.51672 4.66280 4.68462 4.74078 4.76593 4.80711 4.84301 4.98453 5.00978 5.01308 5.11655 5.13514 5.20003 5.25116 5.39767 5.46166 5.51631 5.59162 5.66675 6.13279 6.43164 6.83895 7.11806 7.49627 8.14943 8.89538 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.004695 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.596393 B = 5962.245372 C = 6884.649190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.023 4.023 3 C -0.158 4.158 4 C -0.212 4.212 5 S 0.200 5.800 6 C -0.309 4.309 7 C 0.591 3.409 8 O -0.546 6.546 9 N -0.705 5.705 10 C 0.172 3.828 11 C -0.101 4.101 12 C -0.110 4.110 13 C -0.123 4.123 14 C 0.152 3.848 15 H 0.053 0.947 16 N -0.616 5.616 17 C -0.303 4.303 18 H 0.051 0.949 19 C -0.073 4.073 20 N -0.959 5.959 21 Si 1.099 2.901 22 H -0.283 1.283 23 H -0.269 1.269 24 H -0.306 1.306 25 C 0.101 3.899 26 C -0.118 4.118 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.171 0.829 31 H 0.200 0.800 32 H 0.402 0.598 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.249 0.751 40 H 0.028 0.972 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 21.900 11.952 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.039 4.039 3 C -0.189 4.189 4 C -0.350 4.350 5 S 0.468 5.532 6 C -0.429 4.429 7 C 0.379 3.621 8 O -0.426 6.426 9 N -0.356 5.356 10 C 0.085 3.915 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.162 4.162 14 C 0.046 3.954 15 H 0.071 0.929 16 N -0.342 5.342 17 C -0.431 4.431 18 H 0.069 0.931 19 C -0.267 4.267 20 N -0.603 5.603 21 Si 0.927 3.073 22 H -0.209 1.209 23 H -0.194 1.194 24 H -0.234 1.234 25 C -0.024 4.024 26 C -0.157 4.157 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.188 0.812 31 H 0.217 0.783 32 H 0.237 0.763 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.095 21.284 10.356 24.212 hybrid contribution -0.338 -0.200 1.218 1.280 sum -5.433 21.084 11.575 24.658 Atomic orbital electron populations 1.20711 0.88450 1.03795 1.03168 1.19848 0.98383 0.90767 0.94903 1.20164 0.92650 1.00060 1.05995 1.25690 1.01241 1.01583 1.06438 1.83196 1.02625 0.99567 1.67779 1.24409 0.98879 0.96739 1.22898 1.17142 0.85978 0.83290 0.75645 1.90740 1.14940 1.85697 1.51264 1.45792 1.09783 1.04906 1.75090 1.21447 0.93809 0.80221 0.96050 1.22182 0.98399 0.98638 0.94802 1.22500 0.99202 0.96091 0.96979 1.22931 0.99093 0.97352 0.96869 1.22058 0.95152 0.92486 0.85728 0.92937 1.44869 1.42814 1.42487 1.03980 1.19893 1.22260 1.07930 0.93050 0.93124 1.26828 0.99794 1.02381 0.97689 1.71007 1.50867 1.02211 1.36262 0.83386 0.76050 0.73903 0.73991 1.20943 1.19416 1.23399 1.22134 0.91007 0.94446 0.94793 1.23040 0.96449 1.01209 0.94996 0.90327 0.89515 0.91209 0.81151 0.78307 0.76275 0.91293 0.90814 0.90493 0.89956 0.92924 0.92382 0.94100 0.95425 0.94001 0.89791 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 9.55 71.24 0.68 -1.36 16 2 C -0.02 -0.49 5.90 -20.42 -0.12 -0.61 16 3 C -0.16 -2.46 9.97 21.09 0.21 -2.25 16 4 C -0.21 -3.00 10.92 66.81 0.73 -2.27 16 5 S 0.20 3.77 22.16 -56.49 -1.25 2.52 16 6 C -0.31 -7.64 6.45 24.08 0.16 -7.48 16 7 C 0.59 17.55 6.94 86.42 0.60 18.15 16 8 O -0.55 -18.18 12.12 -4.37 -0.05 -18.23 16 9 N -0.71 -21.11 5.24 -419.80 -2.20 -23.31 16 10 C 0.17 5.63 0.74 5.18 0.00 5.64 16 11 C -0.10 -2.88 5.24 31.21 0.16 -2.72 16 12 C -0.11 -2.87 6.85 32.03 0.22 -2.65 16 13 C -0.12 -4.26 6.33 32.22 0.20 -4.05 16 14 C 0.15 5.80 3.61 46.24 0.17 5.97 16 15 H 0.05 1.99 7.97 -2.39 -0.02 1.97 16 16 N -0.62 -29.26 2.90 -663.17 -1.93 -31.19 16 17 C -0.30 -17.17 10.15 84.03 0.85 -16.32 16 18 H 0.05 3.08 8.06 -2.91 -0.02 3.05 16 19 C -0.07 -4.32 5.42 84.86 0.46 -3.86 16 20 N -0.96 -61.54 13.70 21.65 0.30 -61.24 16 21 Si 1.10 54.84 24.69 68.60 1.69 56.53 16 22 H -0.28 -13.42 6.62 99.48 0.66 -12.77 16 23 H -0.27 -12.38 6.19 99.48 0.62 -11.76 16 24 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 25 C 0.10 4.44 4.70 86.94 0.41 4.85 16 26 C -0.12 -4.29 5.80 31.98 0.19 -4.10 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.77 6.01 -2.39 -0.01 1.76 16 30 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.40 11.18 7.60 -92.71 -0.70 10.47 16 33 H 0.07 1.91 7.40 -2.39 -0.02 1.89 16 34 H 0.07 2.11 7.37 -2.39 -0.02 2.09 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 2.05 8.09 -2.38 -0.02 2.03 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.25 16.03 8.73 -92.70 -0.81 15.22 16 40 H 0.03 1.25 5.60 -2.39 -0.01 1.23 16 41 H 0.04 1.99 6.20 -2.39 -0.01 1.98 16 42 H 0.08 2.97 7.62 -2.38 -0.02 2.95 16 43 H 0.08 2.83 6.84 -2.39 -0.02 2.81 16 Total: -1.00 -69.98 343.63 1.63 -68.35 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.15 Total: 19.63 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 4.92 Total: -13.06 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -3.83 Total: -115.75 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.05 Total: -18.23 kcal Atomic # 14 Polarization: 54.84 SS G_CDS: 1.69 Total: 56.53 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.25 Total: 2.52 kcal Total: -69.98 1.63 -68.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989909400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.173 kcal (2) G-P(sol) polarization free energy of solvation -69.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds