Wall clock time and date at job start Tue Mar 31 2020 12:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37470 * 123.35351 * 2 1 4 4 C 1.33811 * 115.10179 * 179.97438 * 3 2 1 5 5 S 1.70618 * 110.95449 * 359.73028 * 4 3 2 6 6 C 1.36654 * 123.35123 * 179.97438 * 2 1 3 7 7 C 1.46587 * 125.45732 * 0.02562 * 6 2 1 8 8 O 1.21701 * 119.99971 * 0.02562 * 7 6 2 9 9 N 1.34771 * 120.00091 * 179.97438 * 7 6 2 10 10 C 1.46501 * 120.00404 * 180.02562 * 9 7 6 11 11 C 1.53586 * 112.66921 * 59.33433 * 10 9 7 12 12 C 1.54402 * 106.75093 * 121.59034 * 11 10 9 13 13 C 1.54761 * 104.07426 * 24.70175 * 12 11 10 14 14 C 1.54781 * 103.36057 * 322.40732 * 13 12 11 15 15 H 1.08998 * 111.86406 * 274.05932 * 14 13 12 16 16 N 1.46977 * 108.68336 * 150.11576 * 14 13 12 17 17 C 1.36938 * 125.57702 * 65.89393 * 16 14 13 18 18 H 1.08001 * 120.00608 * 359.97438 * 17 16 14 19 19 C 1.38821 * 119.99744 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99981 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46933 * 59.99809 * 21 19 17 23 23 H 1.48494 * 109.47052 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46896 * 300.00026 * 21 19 17 25 25 C 1.47365 * 108.84233 * 245.87497 * 16 14 13 26 26 C 1.54858 * 104.82211 * 24.68784 * 25 16 14 27 27 H 1.08998 * 109.46925 * 270.02031 * 1 2 3 28 28 H 1.09001 * 109.47365 * 30.02359 * 1 2 3 29 29 H 1.09000 * 109.47124 * 150.02416 * 1 2 3 30 30 H 1.08003 * 122.44337 * 0.02562 * 3 2 1 31 31 H 1.08008 * 124.52095 * 179.97438 * 4 3 2 32 32 H 0.97009 * 119.99997 * 0.02562 * 9 7 6 33 33 H 1.08994 * 110.01917 * 240.75403 * 11 10 9 34 34 H 1.09000 * 110.01627 * 2.10377 * 11 10 9 35 35 H 1.09003 * 110.41899 * 266.11438 * 12 11 10 36 36 H 1.09004 * 110.64966 * 143.39971 * 12 11 10 37 37 H 1.09002 * 110.67220 * 203.89107 * 13 12 11 38 38 H 1.09001 * 110.66738 * 80.92326 * 13 12 11 39 39 H 0.97003 * 120.00066 * 179.97438 * 20 19 17 40 40 H 1.08995 * 110.37426 * 143.52915 * 25 16 14 41 41 H 1.09004 * 110.36777 * 265.74595 * 25 16 14 42 42 H 1.08997 * 110.97182 * 81.05011 * 26 25 16 43 43 H 1.09000 * 110.97176 * 204.77829 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9562 0.0005 5 16 3.9623 -0.7082 0.0086 6 6 2.2583 -1.1415 0.0005 7 6 1.7284 -2.5082 0.0006 8 8 0.5257 -2.6946 -0.0003 9 7 2.5730 -3.5584 0.0006 10 6 2.0435 -4.9244 0.0001 11 6 1.1560 -5.2148 -1.2193 12 6 1.7927 -6.4118 -1.9581 13 6 2.5962 -7.1481 -0.8594 14 6 3.1669 -5.9943 0.0002 15 1 4.1075 -5.6165 -0.4005 16 7 3.3132 -6.4664 1.3844 17 6 4.1756 -7.4429 1.8062 18 1 4.8223 -7.9361 1.0955 19 6 4.2186 -7.7990 3.1473 20 7 3.4310 -7.1976 4.0134 21 14 5.3955 -9.1306 3.7228 22 1 6.7905 -8.7254 3.4141 23 1 5.2487 -9.3214 5.1881 24 1 5.0834 -10.4030 3.0236 25 6 2.3803 -5.7165 2.2441 26 6 1.2522 -5.2494 1.2917 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.8200 2.1334 0.0004 31 1 4.3206 1.7491 0.0002 32 1 3.5317 -3.4099 0.0009 33 1 0.1484 -5.4737 -0.8942 34 1 1.1244 -4.3437 -1.8737 35 1 2.4579 -6.0613 -2.7473 36 1 1.0219 -7.0639 -2.3691 37 1 3.4023 -7.7347 -1.3000 38 1 1.9406 -7.7836 -0.2640 39 1 3.4608 -7.4467 4.9504 40 1 1.9763 -6.3648 3.0216 41 1 2.8823 -4.8579 2.6902 42 1 0.5327 -6.0493 1.1173 43 1 0.7568 -4.3597 1.6805 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989909407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:55 Heat of formation + Delta-G solvation = 22.356517 kcal Electronic energy + Delta-G solvation = -25523.097301 eV Core-core repulsion = 22081.329419 eV Total energy + Delta-G solvation = -3441.767882 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.24407 -38.74727 -37.35968 -34.24215 -33.45724 -31.47686 -30.95953 -29.88367 -28.13713 -26.70683 -25.81979 -23.83854 -23.61631 -21.88261 -20.23248 -19.95551 -19.04374 -18.34125 -17.95137 -16.99759 -16.02188 -15.48804 -15.16741 -15.03582 -14.81138 -14.12901 -13.88272 -13.59943 -13.39660 -13.29924 -13.04815 -12.78592 -12.41397 -12.18521 -12.14504 -11.81637 -11.79464 -11.61255 -11.15870 -10.96908 -10.94375 -10.83015 -10.64695 -10.51348 -10.16511 -10.05183 -9.96414 -9.75865 -9.61295 -9.37152 -8.92540 -8.64753 -8.53727 -8.48934 -6.84987 -5.63798 -3.07129 0.48465 1.43185 1.82363 2.32991 3.34704 3.39694 3.40975 3.44881 3.45909 4.47809 4.74970 4.80244 5.03683 5.13348 5.17498 5.25676 5.33223 5.49660 5.52793 5.65904 5.73202 5.83140 5.84424 5.86664 5.94788 6.01231 6.09366 6.15332 6.24436 6.27392 6.37450 6.43344 6.48757 6.55545 6.61359 6.78985 6.80466 6.99766 7.12809 7.55669 7.64827 7.77051 7.88835 8.37344 8.44460 9.22031 9.83040 10.47327 11.38669 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016107 B = 0.004022 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.911132 B = 6959.996206 C = 7697.979595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.028 4.028 3 C -0.148 4.148 4 C -0.234 4.234 5 S 0.198 5.802 6 C -0.265 4.265 7 C 0.590 3.410 8 O -0.524 6.524 9 N -0.700 5.700 10 C 0.163 3.837 11 C -0.109 4.109 12 C -0.125 4.125 13 C -0.129 4.129 14 C 0.161 3.839 15 H 0.046 0.954 16 N -0.595 5.595 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.152 3.848 26 C -0.141 4.141 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.142 0.858 31 H 0.167 0.833 32 H 0.396 0.604 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.252 0.748 40 H 0.108 0.892 41 H 0.009 0.991 42 H 0.069 0.931 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 14.253 -10.484 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.043 4.043 3 C -0.180 4.180 4 C -0.372 4.372 5 S 0.467 5.533 6 C -0.386 4.386 7 C 0.376 3.624 8 O -0.403 6.403 9 N -0.349 5.349 10 C 0.077 3.923 11 C -0.148 4.148 12 C -0.163 4.163 13 C -0.169 4.169 14 C 0.053 3.947 15 H 0.064 0.936 16 N -0.319 5.319 17 C -0.350 4.350 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.744 3.256 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.027 3.973 26 C -0.181 4.181 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.160 0.840 31 H 0.184 0.816 32 H 0.230 0.770 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.126 0.874 41 H 0.027 0.973 42 H 0.087 0.913 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.351 13.162 -10.227 16.723 hybrid contribution 0.060 0.559 0.394 0.686 sum -1.292 13.721 -9.833 16.930 Atomic orbital electron populations 1.20718 0.88722 1.03716 1.03050 1.19512 0.97878 0.90352 0.96550 1.19908 0.92583 0.99587 1.05944 1.25241 1.00651 1.01951 1.09318 1.83173 1.04412 0.97976 1.67772 1.24583 0.97053 0.97785 1.19164 1.16840 0.86361 0.82533 0.76647 1.90752 1.14130 1.85114 1.50277 1.45793 1.09220 1.05554 1.74365 1.21647 0.94912 0.79504 0.96276 1.22280 0.98908 0.97799 0.95842 1.22400 0.99105 0.96890 0.97901 1.22950 0.99233 0.98420 0.96333 1.21798 0.93755 0.91139 0.88041 0.93646 1.44520 1.44490 1.42017 1.00915 1.18989 1.13225 1.10507 0.92267 0.90564 1.24774 0.99864 0.99962 0.95860 1.69793 1.40765 1.44071 1.02213 0.86182 0.80382 0.81494 0.77585 1.21297 1.21642 1.21172 1.21971 0.87462 0.94826 0.92994 1.23333 0.98768 1.00418 0.95543 0.90749 0.92000 0.88730 0.84000 0.81571 0.76995 0.91054 0.92244 0.92382 0.92161 0.92363 0.90678 0.93704 0.87429 0.97318 0.91268 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.55 36.01 0.34 -0.88 16 2 C -0.03 -0.36 5.90 -105.47 -0.62 -0.98 16 3 C -0.15 -1.54 9.97 -41.42 -0.41 -1.95 16 4 C -0.23 -2.26 10.92 29.18 0.32 -1.95 16 5 S 0.20 2.24 22.16 -107.50 -2.38 -0.14 16 6 C -0.27 -3.75 6.45 -36.79 -0.24 -3.99 16 7 C 0.59 9.81 6.95 -12.90 -0.09 9.72 16 8 O -0.52 -9.68 12.12 5.19 0.06 -9.62 16 9 N -0.70 -11.70 5.24 -46.67 -0.24 -11.94 16 10 C 0.16 2.97 0.75 -129.38 -0.10 2.87 16 11 C -0.11 -1.79 5.23 -25.69 -0.13 -1.93 16 12 C -0.12 -1.87 6.85 -25.07 -0.17 -2.05 16 13 C -0.13 -2.34 6.20 -24.87 -0.15 -2.49 16 14 C 0.16 3.22 3.65 -65.60 -0.24 2.98 16 15 H 0.05 0.90 8.02 -51.93 -0.42 0.48 16 16 N -0.60 -14.63 3.03 -161.14 -0.49 -15.12 16 17 C -0.22 -5.95 10.01 -15.06 -0.15 -6.11 16 18 H 0.08 1.98 7.83 -52.49 -0.41 1.56 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -26.56 10.07 55.49 0.56 -26.00 16 21 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.15 3.73 5.90 -2.59 -0.02 3.72 16 26 C -0.14 -2.92 5.75 -24.74 -0.14 -3.06 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.30 6.01 -51.93 -0.31 0.99 16 30 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.40 6.13 7.63 -40.82 -0.31 5.82 16 33 H 0.07 1.20 7.37 -51.93 -0.38 0.82 16 34 H 0.06 0.96 7.43 -51.93 -0.39 0.58 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.11 2.98 5.83 -51.93 -0.30 2.68 16 41 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.07 1.42 7.62 -51.93 -0.40 1.02 16 43 H 0.07 1.39 6.82 -51.93 -0.35 1.04 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -30.10 348.99 -10.37 -40.46 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.21 Total: 6.77 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.90 Total: -6.42 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.17 Total: -53.06 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.06 Total: -9.62 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.38 Total: -0.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.10 -10.37 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989909407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.821 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds