Wall clock time and date at job start Tue Mar 31 2020 12:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37470 * 123.35351 * 2 1 4 4 C 1.33811 * 115.10179 * 179.97438 * 3 2 1 5 5 S 1.70618 * 110.95449 * 359.73028 * 4 3 2 6 6 C 1.36654 * 123.35123 * 179.97438 * 2 1 3 7 7 C 1.46587 * 125.45732 * 0.02562 * 6 2 1 8 8 O 1.21701 * 119.99971 * 0.02562 * 7 6 2 9 9 N 1.34771 * 120.00091 * 179.97438 * 7 6 2 10 10 C 1.46501 * 120.00404 * 180.02562 * 9 7 6 11 11 C 1.53586 * 112.66921 * 59.33433 * 10 9 7 12 12 C 1.54402 * 106.75093 * 121.59034 * 11 10 9 13 13 C 1.54761 * 104.07426 * 24.70175 * 12 11 10 14 14 C 1.54781 * 103.36057 * 322.40732 * 13 12 11 15 15 H 1.08998 * 111.86406 * 274.05932 * 14 13 12 16 16 N 1.46977 * 108.68336 * 150.11576 * 14 13 12 17 17 C 1.36938 * 125.57702 * 65.89393 * 16 14 13 18 18 H 1.08001 * 120.00608 * 359.97438 * 17 16 14 19 19 C 1.38821 * 119.99744 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99981 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46933 * 59.99809 * 21 19 17 23 23 H 1.48494 * 109.47052 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46896 * 300.00026 * 21 19 17 25 25 C 1.47365 * 108.84233 * 245.87497 * 16 14 13 26 26 C 1.54858 * 104.82211 * 24.68784 * 25 16 14 27 27 H 1.08998 * 109.46925 * 270.02031 * 1 2 3 28 28 H 1.09001 * 109.47365 * 30.02359 * 1 2 3 29 29 H 1.09000 * 109.47124 * 150.02416 * 1 2 3 30 30 H 1.08003 * 122.44337 * 0.02562 * 3 2 1 31 31 H 1.08008 * 124.52095 * 179.97438 * 4 3 2 32 32 H 0.97009 * 119.99997 * 0.02562 * 9 7 6 33 33 H 1.08994 * 110.01917 * 240.75403 * 11 10 9 34 34 H 1.09000 * 110.01627 * 2.10377 * 11 10 9 35 35 H 1.09003 * 110.41899 * 266.11438 * 12 11 10 36 36 H 1.09004 * 110.64966 * 143.39971 * 12 11 10 37 37 H 1.09002 * 110.67220 * 203.89107 * 13 12 11 38 38 H 1.09001 * 110.66738 * 80.92326 * 13 12 11 39 39 H 0.97003 * 120.00066 * 179.97438 * 20 19 17 40 40 H 1.08995 * 110.37426 * 143.52915 * 25 16 14 41 41 H 1.09004 * 110.36777 * 265.74595 * 25 16 14 42 42 H 1.08997 * 110.97182 * 81.05011 * 26 25 16 43 43 H 1.09000 * 110.97176 * 204.77829 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9562 0.0005 5 16 3.9623 -0.7082 0.0086 6 6 2.2583 -1.1415 0.0005 7 6 1.7284 -2.5082 0.0006 8 8 0.5257 -2.6946 -0.0003 9 7 2.5730 -3.5584 0.0006 10 6 2.0435 -4.9244 0.0001 11 6 1.1560 -5.2148 -1.2193 12 6 1.7927 -6.4118 -1.9581 13 6 2.5962 -7.1481 -0.8594 14 6 3.1669 -5.9943 0.0002 15 1 4.1075 -5.6165 -0.4005 16 7 3.3132 -6.4664 1.3844 17 6 4.1756 -7.4429 1.8062 18 1 4.8223 -7.9361 1.0955 19 6 4.2186 -7.7990 3.1473 20 7 3.4310 -7.1976 4.0134 21 14 5.3955 -9.1306 3.7228 22 1 6.7905 -8.7254 3.4141 23 1 5.2487 -9.3214 5.1881 24 1 5.0834 -10.4030 3.0236 25 6 2.3803 -5.7165 2.2441 26 6 1.2522 -5.2494 1.2917 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.8200 2.1334 0.0004 31 1 4.3206 1.7491 0.0002 32 1 3.5317 -3.4099 0.0009 33 1 0.1484 -5.4737 -0.8942 34 1 1.1244 -4.3437 -1.8737 35 1 2.4579 -6.0613 -2.7473 36 1 1.0219 -7.0639 -2.3691 37 1 3.4023 -7.7347 -1.3000 38 1 1.9406 -7.7836 -0.2640 39 1 3.4608 -7.4467 4.9504 40 1 1.9763 -6.3648 3.0216 41 1 2.8823 -4.8579 2.6902 42 1 0.5327 -6.0493 1.1173 43 1 0.7568 -4.3597 1.6805 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989909407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:54 Heat of formation + Delta-G solvation = 5.050560 kcal Electronic energy + Delta-G solvation = -25523.847743 eV Core-core repulsion = 22081.329419 eV Total energy + Delta-G solvation = -3442.518324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65757 -39.98552 -38.49958 -36.03328 -34.81803 -33.34537 -31.99491 -31.46057 -29.28804 -28.42318 -27.27250 -25.73111 -24.54072 -23.14494 -21.89229 -21.42275 -20.39016 -19.64100 -19.06134 -18.77076 -17.38820 -16.87323 -16.67982 -16.26046 -16.14895 -15.73183 -15.18222 -15.09839 -14.65723 -14.54738 -14.41406 -14.08499 -13.88623 -13.50801 -13.33301 -13.13470 -13.03149 -12.93150 -12.76617 -12.67362 -12.63929 -12.27996 -12.06946 -11.91000 -11.82134 -11.71329 -11.57170 -11.50028 -11.26084 -10.77061 -10.70987 -10.09400 -9.71530 -9.39397 -8.86801 -7.73022 -5.18260 -0.45433 0.53071 0.96877 1.43049 1.48416 1.51121 1.57346 2.08432 2.19744 2.51841 3.34168 3.36803 3.63327 3.85416 3.93670 3.95219 3.99756 4.26981 4.35044 4.38883 4.43272 4.46814 4.57408 4.63419 4.68954 4.79325 4.81442 4.87040 4.94198 5.01120 5.08434 5.11338 5.16080 5.22069 5.31056 5.40653 5.46895 5.51372 5.54496 5.64292 5.67202 5.83012 6.30879 6.48501 7.12052 7.16557 7.80428 8.44814 9.28292 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016107 B = 0.004022 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.911132 B = 6959.996206 C = 7697.979595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.026 4.026 3 C -0.158 4.158 4 C -0.213 4.213 5 S 0.203 5.797 6 C -0.309 4.309 7 C 0.588 3.412 8 O -0.551 6.551 9 N -0.702 5.702 10 C 0.172 3.828 11 C -0.103 4.103 12 C -0.110 4.110 13 C -0.124 4.124 14 C 0.153 3.847 15 H 0.055 0.945 16 N -0.611 5.611 17 C -0.227 4.227 18 H 0.086 0.914 19 C -0.067 4.067 20 N -0.952 5.952 21 Si 0.978 3.022 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.277 1.277 25 C 0.163 3.837 26 C -0.128 4.128 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.172 0.828 31 H 0.201 0.799 32 H 0.401 0.599 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.244 0.756 40 H 0.073 0.927 41 H -0.021 1.021 42 H 0.069 0.931 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 15.752 -12.637 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.042 4.042 3 C -0.188 4.188 4 C -0.350 4.350 5 S 0.472 5.528 6 C -0.429 4.429 7 C 0.376 3.624 8 O -0.431 6.431 9 N -0.351 5.351 10 C 0.085 3.915 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.164 4.164 14 C 0.046 3.954 15 H 0.072 0.928 16 N -0.335 5.335 17 C -0.356 4.356 18 H 0.103 0.897 19 C -0.260 4.260 20 N -0.602 5.602 21 Si 0.806 3.194 22 H -0.204 1.204 23 H -0.225 1.225 24 H -0.203 1.203 25 C 0.038 3.962 26 C -0.168 4.168 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.189 0.811 31 H 0.218 0.782 32 H 0.236 0.764 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.091 0.909 41 H -0.003 1.003 42 H 0.087 0.913 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.373 14.670 -12.429 19.231 hybrid contribution -0.220 0.208 1.066 1.109 sum -0.593 14.878 -11.363 18.730 Atomic orbital electron populations 1.20704 0.88572 1.03948 1.02889 1.19858 0.98368 0.90851 0.95125 1.20149 0.92668 0.99980 1.06019 1.25699 1.01220 1.01598 1.06514 1.83141 1.02473 0.99511 1.67688 1.24436 0.99050 0.96722 1.22687 1.17199 0.86012 0.83443 0.75708 1.90729 1.15142 1.85773 1.51501 1.45750 1.09600 1.05048 1.74749 1.21490 0.94118 0.80172 0.95729 1.22212 0.98214 0.98747 0.94989 1.22344 0.99435 0.95901 0.97074 1.22804 0.99400 0.97526 0.96661 1.22052 0.94768 0.92543 0.86042 0.92787 1.44704 1.44180 1.41735 1.02856 1.19383 1.13103 1.10547 0.92555 0.89661 1.25589 1.01794 1.02381 0.96186 1.70057 1.42509 1.45674 1.01932 0.85160 0.78644 0.79166 0.76410 1.20410 1.22504 1.20260 1.21614 0.88386 0.93014 0.93201 1.23133 0.97573 0.99892 0.96199 0.91033 0.89125 0.91080 0.81064 0.78154 0.76412 0.91603 0.91646 0.90126 0.90061 0.91453 0.93049 0.94591 0.90932 1.00261 0.91275 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.33 9.55 71.24 0.68 -1.65 16 2 C -0.03 -0.62 5.90 -20.42 -0.12 -0.74 16 3 C -0.16 -2.77 9.97 21.08 0.21 -2.56 16 4 C -0.21 -3.39 10.92 66.81 0.73 -2.66 16 5 S 0.20 4.28 22.16 -56.49 -1.25 3.02 16 6 C -0.31 -8.56 6.45 24.08 0.16 -8.41 16 7 C 0.59 19.75 6.95 86.42 0.60 20.35 16 8 O -0.55 -20.78 12.12 -4.35 -0.05 -20.84 16 9 N -0.70 -23.59 5.24 -419.78 -2.20 -25.79 16 10 C 0.17 6.28 0.75 5.19 0.00 6.28 16 11 C -0.10 -3.24 5.23 31.27 0.16 -3.08 16 12 C -0.11 -3.00 6.85 31.67 0.22 -2.79 16 13 C -0.12 -4.33 6.20 31.80 0.20 -4.13 16 14 C 0.15 6.08 3.65 46.24 0.17 6.24 16 15 H 0.05 2.08 8.02 -2.39 -0.02 2.06 16 16 N -0.61 -30.72 3.03 -663.72 -2.01 -32.73 16 17 C -0.23 -12.36 10.01 84.04 0.84 -11.52 16 18 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 19 C -0.07 -3.79 5.49 84.87 0.47 -3.32 16 20 N -0.95 -57.25 10.07 21.65 0.22 -57.03 16 21 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 25 C 0.16 8.43 5.90 86.85 0.51 8.94 16 26 C -0.13 -5.51 5.75 31.88 0.18 -5.33 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.97 6.01 -2.39 -0.01 1.96 16 30 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.40 12.46 7.63 -92.70 -0.71 11.75 16 33 H 0.07 2.16 7.37 -2.39 -0.02 2.14 16 34 H 0.06 2.01 7.43 -2.39 -0.02 2.00 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 39 H 0.24 14.43 8.31 -92.71 -0.77 13.65 16 40 H 0.07 4.29 5.83 -2.39 -0.01 4.27 16 41 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 42 H 0.07 2.93 7.62 -2.39 -0.02 2.91 16 43 H 0.06 2.63 6.82 -2.39 -0.02 2.61 16 Total: -1.00 -67.79 348.99 2.06 -65.73 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.32 Total: 24.56 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.01 Total: -4.35 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -3.99 Total: -115.56 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.84 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.25 Total: 3.02 kcal Total: -67.79 2.06 -65.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989909407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.779 kcal (2) G-P(sol) polarization free energy of solvation -67.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds