Wall clock time and date at job start Tue Mar 31 2020 12:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32770 * 123.45803 * 2 1 4 4 S 1.75504 * 110.57211 * 180.23113 * 3 2 1 5 5 C 1.70444 * 92.44668 * 359.74064 * 4 3 2 6 6 C 1.36004 * 110.81728 * 359.97438 * 5 4 3 7 7 C 1.47188 * 123.46145 * 179.97438 * 6 5 4 8 8 O 1.21643 * 120.00095 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00222 * 0.02562 * 7 6 5 10 10 C 1.46495 * 120.00333 * 179.72454 * 9 7 6 11 11 C 1.53578 * 112.24383 * 61.01409 * 10 9 7 12 12 C 1.54218 * 106.67868 * 121.17239 * 11 10 9 13 13 C 1.54761 * 104.15697 * 24.94017 * 12 11 10 14 14 C 1.54770 * 103.21225 * 322.19532 * 13 12 11 15 15 H 1.09002 * 111.41915 * 275.30581 * 14 13 12 16 16 N 1.46977 * 109.16318 * 150.40723 * 14 13 12 17 17 C 1.36933 * 125.58378 * 65.65635 * 16 14 13 18 18 H 1.07995 * 119.99905 * 346.51749 * 17 16 14 19 19 C 1.38815 * 119.99965 * 166.51178 * 17 16 14 20 20 N 1.31617 * 120.00108 * 351.87894 * 19 17 16 21 21 Si 1.86801 * 119.99916 * 171.87502 * 19 17 16 22 22 H 1.48500 * 109.47147 * 94.97676 * 21 19 17 23 23 H 1.48502 * 109.47380 * 214.97773 * 21 19 17 24 24 H 1.48498 * 109.47163 * 334.98152 * 21 19 17 25 25 C 1.47376 * 108.83850 * 245.63901 * 16 14 13 26 26 C 1.54917 * 112.33433 * 297.64350 * 10 9 7 27 27 H 1.09009 * 109.46716 * 270.23060 * 1 2 3 28 28 H 1.09000 * 109.47267 * 30.22558 * 1 2 3 29 29 H 1.08997 * 109.47109 * 150.23159 * 1 2 3 30 30 H 1.08005 * 124.71307 * 359.93838 * 3 2 1 31 31 H 1.08002 * 124.59219 * 179.97438 * 5 4 3 32 32 H 0.97004 * 119.99347 * 359.97438 * 9 7 6 33 33 H 1.09003 * 110.01656 * 240.47255 * 11 10 9 34 34 H 1.09001 * 110.01897 * 1.81809 * 11 10 9 35 35 H 1.08997 * 110.49870 * 143.61696 * 12 11 10 36 36 H 1.09004 * 110.49388 * 266.27514 * 12 11 10 37 37 H 1.09001 * 110.66397 * 80.62444 * 13 12 11 38 38 H 1.08997 * 110.66877 * 203.59045 * 13 12 11 39 39 H 0.97006 * 119.99902 * 180.02562 * 20 19 17 40 40 H 1.09000 * 110.36630 * 143.52714 * 25 16 14 41 41 H 1.08998 * 110.37001 * 265.85355 * 25 16 14 42 42 H 1.09006 * 110.96252 * 31.90396 * 26 10 9 43 43 H 1.08991 * 110.96879 * 155.66614 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2391 1.1077 0.0000 4 16 3.9499 0.7163 -0.0066 5 6 3.6411 -0.9599 -0.0016 6 6 2.3033 -1.2049 0.0053 7 6 1.7263 -2.5590 0.0104 8 8 0.5187 -2.7055 0.0161 9 7 2.5357 -3.6365 0.0088 10 6 1.9615 -4.9842 0.0199 11 6 1.0895 -5.2548 -1.2150 12 6 1.7040 -6.4741 -1.9321 13 6 2.4578 -7.2313 -0.8125 14 6 3.0487 -6.0904 0.0503 15 1 3.9987 -5.7384 -0.3518 16 7 3.1611 -6.5472 1.4428 17 6 3.9850 -7.5454 1.8899 18 1 4.4579 -8.2120 1.1839 19 6 4.2123 -7.7005 3.2505 20 7 3.7690 -6.7972 4.0989 21 14 5.1475 -9.1911 3.8772 22 1 6.5825 -8.8441 4.0368 23 1 4.5906 -9.6094 5.1888 24 1 5.0129 -10.3049 2.9043 25 6 2.2422 -5.7547 2.2792 26 6 1.1297 -5.2591 1.2976 27 1 -0.3633 0.0041 1.0278 28 1 -0.3634 0.8879 -0.5173 29 1 -0.3633 -0.8920 -0.5102 30 1 1.8375 2.1103 -0.0010 31 1 4.4043 -1.7240 -0.0037 32 1 3.4987 -3.5196 0.0039 33 1 0.0676 -5.4782 -0.9085 34 1 1.0995 -4.3882 -1.8760 35 1 0.9206 -7.1018 -2.3568 36 1 2.3978 -6.1508 -2.7081 37 1 1.7677 -7.8387 -0.2269 38 1 3.2509 -7.8496 -1.2330 39 1 3.9282 -6.9054 5.0497 40 1 1.8067 -6.3783 3.0599 41 1 2.7658 -4.9057 2.7186 42 1 0.6554 -4.3462 1.6581 43 1 0.3884 -6.0382 1.1203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990161061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:55 Heat of formation + Delta-G solvation = 17.584434 kcal Electronic energy + Delta-G solvation = -25552.951600 eV Core-core repulsion = 22110.976785 eV Total energy + Delta-G solvation = -3441.974815 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.30285 -38.63845 -36.80242 -34.23364 -33.57323 -31.62420 -30.93744 -29.59131 -27.68677 -26.73418 -26.00649 -24.17306 -23.83118 -21.49625 -20.16719 -19.98282 -18.84860 -18.44120 -17.68591 -16.92726 -16.72156 -15.65162 -15.00775 -14.79273 -14.43780 -14.14249 -13.73569 -13.58533 -13.36852 -13.26172 -13.03107 -12.76495 -12.66269 -12.18263 -12.09337 -11.89006 -11.81084 -11.64649 -11.18588 -11.03841 -10.96647 -10.77919 -10.66498 -10.53225 -10.18608 -10.11891 -9.88502 -9.76319 -9.67184 -9.32879 -8.97979 -8.63706 -8.56220 -8.33740 -6.80497 -5.76295 -3.11350 0.72931 1.47181 1.83938 1.99985 3.37395 3.42749 3.44726 3.45834 3.56614 4.46919 4.59995 4.85335 5.04256 5.15377 5.17531 5.27887 5.32335 5.49718 5.50606 5.64159 5.64522 5.77732 5.80938 5.85986 5.96252 5.97872 6.09093 6.13799 6.18832 6.26499 6.34394 6.40480 6.52129 6.54044 6.58776 6.76454 6.77381 6.98204 7.13905 7.51220 7.62429 7.77708 7.85632 8.24516 8.53125 9.17399 9.79404 10.47652 11.36127 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.003923 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.525227 B = 7135.526746 C = 8016.228612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.049 4.049 3 C -0.249 4.249 4 S 0.173 5.827 5 C -0.208 4.208 6 C -0.148 4.148 7 C 0.577 3.423 8 O -0.531 6.531 9 N -0.699 5.699 10 C 0.163 3.837 11 C -0.111 4.111 12 C -0.124 4.124 13 C -0.130 4.130 14 C 0.162 3.838 15 H 0.045 0.955 16 N -0.592 5.592 17 C -0.229 4.229 18 H 0.075 0.925 19 C -0.004 4.004 20 N -0.915 5.915 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.177 3.823 26 C -0.145 4.145 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.397 0.603 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.253 0.747 40 H 0.064 0.936 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 13.709 -10.838 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.060 4.060 3 C -0.384 4.384 4 S 0.440 5.560 5 C -0.346 4.346 6 C -0.166 4.166 7 C 0.362 3.638 8 O -0.410 6.410 9 N -0.348 5.348 10 C 0.077 3.923 11 C -0.150 4.150 12 C -0.163 4.163 13 C -0.170 4.170 14 C 0.054 3.946 15 H 0.062 0.938 16 N -0.316 5.316 17 C -0.358 4.358 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.562 5.562 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.052 3.948 26 C -0.185 4.185 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.184 0.816 31 H 0.188 0.812 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.915 14.393 -10.601 17.977 hybrid contribution -0.038 -1.546 0.523 1.633 sum -1.953 12.846 -10.077 16.444 Atomic orbital electron populations 1.20653 0.88682 1.03555 1.02947 1.19885 0.97566 0.89882 0.98689 1.25266 0.96344 1.02511 1.14246 1.82936 1.05829 0.97168 1.70087 1.25676 0.99834 1.02641 1.06472 1.20306 0.92030 0.94739 1.09500 1.17485 0.86512 0.83263 0.76542 1.90714 1.13862 1.86339 1.50071 1.45786 1.09627 1.05281 1.74102 1.21627 0.94444 0.80312 0.95904 1.22274 0.99081 0.97689 0.95921 1.22359 0.99234 0.96765 0.97900 1.22931 0.99485 0.98371 0.96251 1.21752 0.94025 0.90780 0.88043 0.93779 1.44438 1.45925 1.40178 1.01098 1.18972 1.21058 1.04797 0.90952 0.90725 1.24866 1.00468 0.98460 0.96304 1.69965 1.50302 1.34024 1.01866 0.86163 0.79320 0.82341 0.78285 1.21669 1.21662 1.20546 1.21647 0.87457 0.94130 0.91550 1.23597 0.98257 1.00693 0.95927 0.91018 0.92204 0.88774 0.81637 0.81231 0.76832 0.91132 0.92251 0.92225 0.92364 0.90846 0.92333 0.93708 0.91789 0.95560 0.91117 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 9.54 36.01 0.34 -0.84 16 2 C -0.05 -0.62 6.01 -104.06 -0.63 -1.25 16 3 C -0.25 -2.57 10.91 28.86 0.31 -2.25 16 4 S 0.17 1.65 23.02 -107.50 -2.48 -0.82 16 5 C -0.21 -2.44 10.38 29.93 0.31 -2.13 16 6 C -0.15 -2.07 5.98 -104.63 -0.63 -2.69 16 7 C 0.58 9.46 6.96 -12.63 -0.09 9.37 16 8 O -0.53 -9.76 12.02 5.24 0.06 -9.70 16 9 N -0.70 -11.39 5.20 -46.49 -0.24 -11.63 16 10 C 0.16 2.93 0.73 -129.38 -0.09 2.84 16 11 C -0.11 -1.79 5.26 -25.79 -0.14 -1.92 16 12 C -0.12 -1.84 6.84 -25.17 -0.17 -2.01 16 13 C -0.13 -2.31 6.25 -24.87 -0.16 -2.47 16 14 C 0.16 3.22 3.63 -65.61 -0.24 2.98 16 15 H 0.04 0.87 7.99 -51.93 -0.41 0.46 16 16 N -0.59 -14.48 3.05 -160.14 -0.49 -14.97 16 17 C -0.23 -6.17 9.97 -15.06 -0.15 -6.32 16 18 H 0.07 1.95 7.84 -52.49 -0.41 1.54 16 19 C 0.00 -0.11 5.40 -17.43 -0.09 -0.20 16 20 N -0.92 -26.59 10.76 55.49 0.60 -25.99 16 21 Si 0.91 21.74 29.56 -169.99 -5.03 16.71 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.18 4.30 5.43 -1.72 -0.01 4.30 16 26 C -0.15 -2.95 5.86 -23.88 -0.14 -3.09 16 27 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.09 1.30 6.03 -51.93 -0.31 0.99 16 30 H 0.17 1.29 8.06 -52.48 -0.42 0.86 16 31 H 0.17 1.73 7.01 -52.49 -0.37 1.37 16 32 H 0.40 5.87 7.00 -40.82 -0.29 5.59 16 33 H 0.07 1.17 7.37 -51.93 -0.38 0.78 16 34 H 0.06 0.95 7.49 -51.93 -0.39 0.56 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.06 1.74 7.09 -51.93 -0.37 1.37 16 41 H 0.03 0.70 8.02 -51.93 -0.42 0.28 16 42 H 0.07 1.46 6.65 -51.93 -0.35 1.12 16 43 H 0.07 1.35 7.63 -51.93 -0.40 0.96 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -30.47 349.36 -10.05 -40.52 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.18 Total: 6.30 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.56 Total: -5.68 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.13 Total: -52.59 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.06 Total: -9.70 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.48 Total: -0.82 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.47 -10.05 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990161061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.100 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds