Wall clock time and date at job start Tue Mar 31 2020 12:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33814 * 122.45015 * 2 1 4 4 S 1.70616 * 110.95715 * 180.02562 * 3 2 1 5 5 C 1.75838 * 91.56075 * 359.97438 * 4 3 2 6 6 C 1.46579 * 125.45727 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99909 * 180.02562 * 6 5 4 8 8 N 1.34780 * 119.99943 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00064 * 179.97438 * 8 6 5 10 10 C 1.51371 * 111.67016 * 68.06207 * 9 8 6 11 11 C 1.55689 * 104.22600 * 83.17490 * 10 9 8 12 12 C 1.56279 * 105.94209 * 7.82577 * 11 10 9 13 13 C 1.50519 * 101.75464 * 24.26007 * 12 11 10 14 14 H 1.08998 * 108.14076 * 66.24243 * 13 12 11 15 15 N 1.42698 * 128.16522 * 198.68082 * 13 12 11 16 16 C 1.36940 * 127.10303 * 331.02936 * 15 13 12 17 17 H 1.08007 * 119.99645 * 350.36649 * 16 15 13 18 18 C 1.38808 * 120.00358 * 170.36762 * 16 15 13 19 19 N 1.31613 * 120.00186 * 153.08022 * 18 16 15 20 20 Si 1.86798 * 119.99650 * 333.07685 * 18 16 15 21 21 H 1.48496 * 109.47144 * 85.29965 * 20 18 16 22 22 H 1.48503 * 109.46954 * 205.29795 * 20 18 16 23 23 H 1.48500 * 109.47697 * 325.29581 * 20 18 16 24 24 C 1.49297 * 105.79808 * 151.29170 * 15 13 12 25 25 C 1.52134 * 111.49659 * 288.52969 * 9 8 6 26 26 C 1.36647 * 109.08197 * 0.24202 * 5 4 3 27 27 H 1.09004 * 109.47270 * 89.97750 * 1 2 3 28 28 H 1.09000 * 109.47346 * 209.97652 * 1 2 3 29 29 H 1.08999 * 109.47577 * 329.98095 * 1 2 3 30 30 H 1.08002 * 124.51797 * 0.03643 * 3 2 1 31 31 H 0.97000 * 119.99821 * 0.02562 * 8 6 5 32 32 H 1.08999 * 110.09659 * 324.75538 * 10 9 8 33 33 H 1.09000 * 111.18190 * 202.12654 * 10 9 8 34 34 H 1.09003 * 110.16055 * 248.70419 * 11 10 9 35 35 H 1.09005 * 110.21516 * 126.97838 * 11 10 9 36 36 H 1.08999 * 110.97131 * 266.14129 * 12 11 10 37 37 H 1.08994 * 110.97290 * 142.37198 * 12 11 10 38 38 H 0.97001 * 120.00356 * 5.04925 * 19 18 16 39 39 H 1.09000 * 110.04631 * 110.35954 * 24 15 13 40 40 H 1.09001 * 110.04910 * 231.83644 * 24 15 13 41 41 H 1.09005 * 111.15014 * 43.77147 * 25 9 8 42 42 H 1.09001 * 111.14625 * 167.95160 * 25 9 8 43 43 H 1.07998 * 123.34826 * 179.76083 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7893 -0.0007 5 6 3.5937 -0.9428 -0.0002 6 6 4.6231 -1.9863 -0.0010 7 8 4.3001 -3.1596 -0.0011 8 7 5.9273 -1.6463 -0.0017 9 6 6.9561 -2.6892 -0.0020 10 6 6.9739 -3.4565 -1.3067 11 6 7.8330 -2.5732 -2.2584 12 6 8.4286 -1.4359 -1.3673 13 6 8.4047 -2.0710 -0.0029 14 1 9.1072 -2.9043 -0.0041 15 7 8.4775 -1.4295 1.2698 16 6 9.1046 -0.2485 1.5649 17 1 9.7443 0.2210 0.8321 18 6 8.9183 0.3452 2.8057 19 7 9.8506 1.1266 3.3080 20 14 7.3441 0.0352 3.7624 21 1 7.4810 -1.2175 4.5480 22 1 7.0927 1.1724 4.6837 23 1 6.2072 -0.0957 2.8160 24 6 7.7343 -2.3151 2.2144 25 6 7.0281 -3.4017 1.3403 26 6 2.2446 -1.1601 -0.0050 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 1.8024 2.1231 0.0006 31 1 6.1846 -0.7111 -0.0013 32 1 5.9605 -3.5591 -1.6947 33 1 7.4330 -4.4371 -1.1807 34 1 7.2070 -2.1472 -3.0425 35 1 8.6357 -3.1646 -2.6989 36 1 7.7977 -0.5475 -1.3952 37 1 9.4486 -1.1977 -1.6688 38 1 10.6348 1.3466 2.7812 39 1 8.4289 -2.7856 2.9103 40 1 6.9904 -1.7366 2.7621 41 1 6.0314 -3.6280 1.7194 42 1 7.6353 -4.3044 1.2742 43 1 1.8019 -2.1451 -0.0095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990592829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:07 Heat of formation + Delta-G solvation = 39.124853 kcal Electronic energy + Delta-G solvation = -25913.164559 eV Core-core repulsion = 22472.123807 eV Total energy + Delta-G solvation = -3441.040752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71434 -38.82439 -37.60030 -34.70649 -33.22062 -32.16615 -31.06704 -29.99483 -27.90115 -27.21296 -26.38203 -24.46574 -23.45906 -21.38271 -20.83496 -19.50905 -19.28209 -18.67222 -18.23031 -17.18233 -16.15620 -15.79950 -15.24756 -15.00479 -14.94029 -14.48352 -14.30339 -13.82381 -13.63391 -13.50206 -13.21973 -13.14031 -12.59124 -12.24446 -12.20857 -12.09294 -12.06270 -11.89898 -11.54084 -11.05524 -11.04637 -10.94093 -10.85751 -10.74701 -10.42747 -10.29835 -9.90479 -9.64270 -9.42426 -9.18279 -8.91249 -8.65945 -8.45757 -8.41751 -7.18011 -6.37892 -3.24124 0.54587 1.50548 1.92008 2.34591 3.36459 3.39660 3.44082 3.46935 3.63804 4.33605 4.54206 4.82203 4.87213 5.02302 5.06727 5.16367 5.19959 5.22130 5.39211 5.43829 5.46564 5.50206 5.57272 5.65264 5.73931 5.79648 5.84665 5.89293 6.04505 6.11820 6.18052 6.25333 6.26641 6.32664 6.34203 6.38690 6.47370 6.51490 6.72262 6.84505 6.98786 7.65873 7.82116 8.26569 8.44892 8.95618 9.58093 10.23472 11.10170 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.005919 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.579595 B = 4729.366749 C = 5947.902969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.120 4.120 3 C -0.243 4.243 4 S 0.215 5.785 5 C -0.257 4.257 6 C 0.588 3.412 7 O -0.537 6.537 8 N -0.688 5.688 9 C 0.127 3.873 10 C -0.111 4.111 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.160 3.840 14 H 0.032 0.968 15 N -0.591 5.591 16 C -0.332 4.332 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.915 5.915 20 Si 1.061 2.939 21 H -0.294 1.294 22 H -0.300 1.300 23 H -0.290 1.290 24 C 0.117 3.883 25 C -0.123 4.123 26 C -0.061 4.061 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.167 0.833 31 H 0.402 0.598 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.264 0.736 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.065 -3.295 -9.947 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C -0.381 4.381 4 S 0.484 5.516 5 C -0.378 4.378 6 C 0.374 3.626 7 O -0.416 6.416 8 N -0.339 5.339 9 C 0.039 3.961 10 C -0.149 4.149 11 C -0.156 4.156 12 C -0.152 4.152 13 C 0.050 3.950 14 H 0.049 0.951 15 N -0.316 5.316 16 C -0.459 4.459 17 H 0.097 0.903 18 C -0.215 4.215 19 N -0.555 5.555 20 Si 0.895 3.105 21 H -0.223 1.223 22 H -0.228 1.228 23 H -0.218 1.218 24 C -0.007 4.007 25 C -0.162 4.162 26 C -0.094 4.094 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.184 0.816 31 H 0.239 0.761 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.586 -2.760 -8.470 16.246 hybrid contribution -0.523 -0.529 -1.317 1.513 sum -14.109 -3.288 -9.787 17.483 Atomic orbital electron populations 1.20484 0.89583 1.02755 1.02205 1.18743 0.97769 0.91556 1.05287 1.25174 0.98972 1.03294 1.10648 1.83477 1.03180 0.98352 1.66617 1.24764 0.98158 0.97458 1.17395 1.16915 0.81728 0.87304 0.76637 1.90768 1.81842 1.17941 1.51096 1.45640 1.04299 1.10472 1.73485 1.21600 0.90844 0.89571 0.94115 1.21893 1.00636 0.98125 0.94287 1.22838 0.98601 0.96502 0.97615 1.21839 1.00836 0.97754 0.94807 1.20933 0.91518 0.94683 0.87845 0.95075 1.44028 1.63080 1.22699 1.01755 1.19977 1.24183 0.98756 1.02979 0.90287 1.25659 1.02819 0.97813 0.95188 1.70913 1.08450 1.41045 1.35131 0.83796 0.76487 0.74733 0.75488 1.22264 1.22769 1.21818 1.22548 0.94158 0.90858 0.93099 1.22514 1.01050 0.97693 0.94902 1.20583 0.90922 0.99790 0.98144 0.91325 0.91391 0.91617 0.81593 0.76137 0.91019 0.90692 0.92099 0.91720 0.91663 0.91534 0.92566 0.93718 0.94581 0.90668 0.90278 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.13 36.01 0.36 -0.39 16 2 C -0.12 -1.39 5.78 -106.45 -0.62 -2.00 16 3 C -0.24 -2.77 10.67 29.18 0.31 -2.46 16 4 S 0.21 2.94 22.16 -107.50 -2.38 0.56 16 5 C -0.26 -4.01 6.45 -36.79 -0.24 -4.24 16 6 C 0.59 10.48 7.13 -12.90 -0.09 10.38 16 7 O -0.54 -10.45 14.99 5.19 0.08 -10.37 16 8 N -0.69 -12.37 4.41 -47.83 -0.21 -12.58 16 9 C 0.13 2.23 0.38 -130.63 -0.05 2.19 16 10 C -0.11 -1.67 6.06 -26.12 -0.16 -1.83 16 11 C -0.12 -1.61 6.93 -23.54 -0.16 -1.77 16 12 C -0.11 -1.88 6.45 -26.21 -0.17 -2.05 16 13 C 0.16 3.10 2.64 -68.72 -0.18 2.91 16 14 H 0.03 0.62 7.96 -51.93 -0.41 0.20 16 15 N -0.59 -13.78 3.01 -162.62 -0.49 -14.27 16 16 C -0.33 -8.99 10.45 -15.06 -0.16 -9.15 16 17 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 18 C -0.01 -0.37 5.45 -17.43 -0.09 -0.47 16 19 N -0.92 -27.89 13.70 55.49 0.76 -27.13 16 20 Si 1.06 26.59 24.77 -169.99 -4.21 22.38 16 21 H -0.29 -7.18 6.86 56.52 0.39 -6.79 16 22 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.29 -6.85 6.83 56.52 0.39 -6.46 16 24 C 0.12 2.57 5.24 -0.71 0.00 2.57 16 25 C -0.12 -2.26 6.19 -25.39 -0.16 -2.42 16 26 C -0.06 -0.83 9.80 -40.44 -0.40 -1.23 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.40 7.43 6.86 -40.82 -0.28 7.15 16 32 H 0.07 1.14 6.84 -51.93 -0.36 0.78 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.11 7.28 -51.93 -0.38 0.73 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.26 7.94 8.73 -40.82 -0.36 7.58 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.04 0.85 3.22 -51.93 -0.17 0.68 16 41 H 0.07 1.41 7.19 -51.93 -0.37 1.04 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -31.21 349.08 -9.21 -40.43 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.22 Total: 5.70 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.80 Total: -9.97 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.06 Total: -53.99 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -4.21 Total: 22.38 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.38 Total: 0.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.21 -9.21 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990592829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.554 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds