Wall clock time and date at job start Tue Mar 31 2020 12:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33814 * 122.45015 * 2 1 4 4 S 1.70616 * 110.95715 * 180.02562 * 3 2 1 5 5 C 1.75838 * 91.56075 * 359.97438 * 4 3 2 6 6 C 1.46579 * 125.45727 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99909 * 180.02562 * 6 5 4 8 8 N 1.34780 * 119.99943 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00064 * 179.97438 * 8 6 5 10 10 C 1.51371 * 111.67016 * 68.06207 * 9 8 6 11 11 C 1.55689 * 104.22600 * 83.17490 * 10 9 8 12 12 C 1.56279 * 105.94209 * 7.82577 * 11 10 9 13 13 C 1.50519 * 101.75464 * 24.26007 * 12 11 10 14 14 H 1.08998 * 108.14076 * 66.24243 * 13 12 11 15 15 N 1.42698 * 128.16522 * 198.68082 * 13 12 11 16 16 C 1.36940 * 127.10303 * 331.02936 * 15 13 12 17 17 H 1.08007 * 119.99645 * 350.36649 * 16 15 13 18 18 C 1.38808 * 120.00358 * 170.36762 * 16 15 13 19 19 N 1.31613 * 120.00186 * 153.08022 * 18 16 15 20 20 Si 1.86798 * 119.99650 * 333.07685 * 18 16 15 21 21 H 1.48496 * 109.47144 * 85.29965 * 20 18 16 22 22 H 1.48503 * 109.46954 * 205.29795 * 20 18 16 23 23 H 1.48500 * 109.47697 * 325.29581 * 20 18 16 24 24 C 1.49297 * 105.79808 * 151.29170 * 15 13 12 25 25 C 1.52134 * 111.49659 * 288.52969 * 9 8 6 26 26 C 1.36647 * 109.08197 * 0.24202 * 5 4 3 27 27 H 1.09004 * 109.47270 * 89.97750 * 1 2 3 28 28 H 1.09000 * 109.47346 * 209.97652 * 1 2 3 29 29 H 1.08999 * 109.47577 * 329.98095 * 1 2 3 30 30 H 1.08002 * 124.51797 * 0.03643 * 3 2 1 31 31 H 0.97000 * 119.99821 * 0.02562 * 8 6 5 32 32 H 1.08999 * 110.09659 * 324.75538 * 10 9 8 33 33 H 1.09000 * 111.18190 * 202.12654 * 10 9 8 34 34 H 1.09003 * 110.16055 * 248.70419 * 11 10 9 35 35 H 1.09005 * 110.21516 * 126.97838 * 11 10 9 36 36 H 1.08999 * 110.97131 * 266.14129 * 12 11 10 37 37 H 1.08994 * 110.97290 * 142.37198 * 12 11 10 38 38 H 0.97001 * 120.00356 * 5.04925 * 19 18 16 39 39 H 1.09000 * 110.04631 * 110.35954 * 24 15 13 40 40 H 1.09001 * 110.04910 * 231.83644 * 24 15 13 41 41 H 1.09005 * 111.15014 * 43.77147 * 25 9 8 42 42 H 1.09001 * 111.14625 * 167.95160 * 25 9 8 43 43 H 1.07998 * 123.34826 * 179.76083 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7893 -0.0007 5 6 3.5937 -0.9428 -0.0002 6 6 4.6231 -1.9863 -0.0010 7 8 4.3001 -3.1596 -0.0011 8 7 5.9273 -1.6463 -0.0017 9 6 6.9561 -2.6892 -0.0020 10 6 6.9739 -3.4565 -1.3067 11 6 7.8330 -2.5732 -2.2584 12 6 8.4286 -1.4359 -1.3673 13 6 8.4047 -2.0710 -0.0029 14 1 9.1072 -2.9043 -0.0041 15 7 8.4775 -1.4295 1.2698 16 6 9.1046 -0.2485 1.5649 17 1 9.7443 0.2210 0.8321 18 6 8.9183 0.3452 2.8057 19 7 9.8506 1.1266 3.3080 20 14 7.3441 0.0352 3.7624 21 1 7.4810 -1.2175 4.5480 22 1 7.0927 1.1724 4.6837 23 1 6.2072 -0.0957 2.8160 24 6 7.7343 -2.3151 2.2144 25 6 7.0281 -3.4017 1.3403 26 6 2.2446 -1.1601 -0.0050 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 1.8024 2.1231 0.0006 31 1 6.1846 -0.7111 -0.0013 32 1 5.9605 -3.5591 -1.6947 33 1 7.4330 -4.4371 -1.1807 34 1 7.2070 -2.1472 -3.0425 35 1 8.6357 -3.1646 -2.6989 36 1 7.7977 -0.5475 -1.3952 37 1 9.4486 -1.1977 -1.6688 38 1 10.6348 1.3466 2.7812 39 1 8.4289 -2.7856 2.9103 40 1 6.9904 -1.7366 2.7621 41 1 6.0314 -3.6280 1.7194 42 1 7.6353 -4.3044 1.2742 43 1 1.8019 -2.1451 -0.0095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990592829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:07 Heat of formation + Delta-G solvation = 19.864257 kcal Electronic energy + Delta-G solvation = -25913.999761 eV Core-core repulsion = 22472.123807 eV Total energy + Delta-G solvation = -3441.875954 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.14917 -40.04743 -38.75891 -36.38271 -34.62236 -34.08066 -32.29373 -31.39941 -28.76275 -28.73576 -27.80667 -25.72546 -25.23675 -22.89774 -22.05798 -21.10170 -20.54886 -19.77248 -19.49506 -19.10273 -17.47119 -17.11956 -16.93045 -16.52145 -16.22247 -15.83182 -15.66654 -15.29713 -14.97660 -14.66289 -14.62371 -14.17332 -14.07183 -13.77566 -13.51858 -13.20041 -13.16085 -12.87973 -12.80444 -12.77278 -12.57742 -12.52601 -12.18047 -12.01605 -11.85014 -11.69940 -11.54189 -11.29310 -11.09502 -10.87531 -10.56334 -10.17201 -9.84361 -9.41722 -9.17996 -8.61168 -5.40271 -0.51084 0.45874 0.93461 1.34702 1.35583 1.43152 1.62695 2.07442 2.17229 2.46753 2.79708 3.13869 3.41173 3.70681 3.74717 3.97398 4.03469 4.07662 4.15256 4.20359 4.27863 4.33933 4.37418 4.52365 4.66689 4.67277 4.74499 4.79374 4.82899 4.86040 4.88880 4.91833 5.02960 5.06435 5.09999 5.14902 5.29282 5.37209 5.41039 5.48001 5.61058 5.67069 6.08891 6.43701 6.78416 7.08797 7.51822 8.18536 8.87991 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.005919 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.579595 B = 4729.366749 C = 5947.902969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.125 4.125 3 C -0.224 4.224 4 S 0.187 5.813 5 C -0.293 4.293 6 C 0.588 3.412 7 O -0.560 6.560 8 N -0.694 5.694 9 C 0.132 3.868 10 C -0.105 4.105 11 C -0.103 4.103 12 C -0.113 4.113 13 C 0.144 3.856 14 H 0.038 0.962 15 N -0.605 5.605 16 C -0.306 4.306 17 H 0.057 0.943 18 C -0.064 4.064 19 N -0.954 5.954 20 Si 1.097 2.903 21 H -0.286 1.286 22 H -0.308 1.308 23 H -0.274 1.274 24 C 0.111 3.889 25 C -0.114 4.114 26 C -0.051 4.051 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.197 0.803 31 H 0.398 0.602 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.252 0.748 39 H 0.037 0.963 40 H 0.024 0.976 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.524 -4.271 -11.400 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C -0.361 4.361 4 S 0.456 5.544 5 C -0.413 4.413 6 C 0.376 3.624 7 O -0.441 6.441 8 N -0.343 5.343 9 C 0.045 3.955 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.152 4.152 13 C 0.036 3.964 14 H 0.055 0.945 15 N -0.330 5.330 16 C -0.434 4.434 17 H 0.074 0.926 18 C -0.260 4.260 19 N -0.598 5.598 20 Si 0.928 3.072 21 H -0.214 1.214 22 H -0.237 1.237 23 H -0.200 1.200 24 C -0.013 4.013 25 C -0.152 4.152 26 C -0.086 4.086 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.214 0.786 31 H 0.233 0.767 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.060 -3.771 -9.965 19.273 hybrid contribution 0.218 -0.225 -0.944 0.995 sum -15.842 -3.996 -10.909 19.646 Atomic orbital electron populations 1.20570 0.86932 1.03883 1.03435 1.19062 0.99527 0.90627 1.04580 1.25541 0.97226 1.04768 1.08591 1.83570 1.05668 0.97678 1.67479 1.24637 0.98337 0.97708 1.20630 1.17167 0.81848 0.87560 0.75832 1.90737 1.82145 1.18905 1.52354 1.45718 1.04666 1.10230 1.73727 1.21663 0.89406 0.89455 0.95003 1.21900 1.00827 0.98902 0.92729 1.22771 0.99107 0.95299 0.96934 1.21866 1.01004 0.98506 0.93810 1.21157 0.93003 0.94840 0.87437 0.94504 1.44006 1.63074 1.21748 1.04179 1.19858 1.22442 0.99307 1.01840 0.92552 1.26539 1.04352 0.98265 0.96843 1.71005 1.09190 1.43770 1.35809 0.83304 0.74495 0.74508 0.74943 1.21383 1.23655 1.20039 1.22626 0.93747 0.91418 0.93508 1.22490 1.00765 0.97444 0.94528 1.20864 0.90455 1.00891 0.96378 0.89958 0.90788 0.90057 0.78566 0.76657 0.91574 0.88816 0.90764 0.89329 0.92618 0.91538 0.93845 0.94496 0.95840 0.90948 0.87832 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 10.13 71.24 0.72 -0.44 16 2 C -0.13 -2.54 5.78 -21.05 -0.12 -2.66 16 3 C -0.22 -4.49 10.67 66.81 0.71 -3.78 16 4 S 0.19 4.95 22.16 -56.49 -1.25 3.69 16 5 C -0.29 -8.85 6.45 24.07 0.16 -8.69 16 6 C 0.59 20.48 7.13 86.42 0.62 21.10 16 7 O -0.56 -21.23 14.99 -4.33 -0.06 -21.30 16 8 N -0.69 -24.38 4.41 -423.44 -1.87 -26.25 16 9 C 0.13 4.46 0.38 4.37 0.00 4.46 16 10 C -0.10 -2.88 6.06 30.99 0.19 -2.69 16 11 C -0.10 -2.52 6.93 32.66 0.23 -2.30 16 12 C -0.11 -3.60 6.45 30.93 0.20 -3.41 16 13 C 0.14 5.42 2.64 46.47 0.12 5.54 16 14 H 0.04 1.38 7.96 -2.39 -0.02 1.36 16 15 N -0.61 -28.19 3.01 -668.42 -2.01 -30.20 16 16 C -0.31 -16.91 10.45 84.03 0.88 -16.03 16 17 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 18 C -0.06 -3.75 5.45 84.86 0.46 -3.29 16 19 N -0.95 -60.05 13.70 21.65 0.30 -59.76 16 20 Si 1.10 54.80 24.77 68.60 1.70 56.50 16 21 H -0.29 -13.75 6.86 99.48 0.68 -13.07 16 22 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 23 H -0.27 -12.71 6.83 99.48 0.68 -12.03 16 24 C 0.11 4.79 5.24 86.99 0.46 5.25 16 25 C -0.11 -4.00 6.19 31.46 0.19 -3.81 16 26 C -0.05 -1.31 9.80 21.72 0.21 -1.10 16 27 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 29 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 30 H 0.20 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.40 14.64 6.86 -92.71 -0.64 14.01 16 32 H 0.07 1.94 6.84 -2.39 -0.02 1.92 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.06 1.86 7.28 -2.39 -0.02 1.85 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.25 15.84 8.73 -92.71 -0.81 15.03 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.02 1.10 3.22 -2.39 -0.01 1.09 16 41 H 0.07 2.62 7.19 -2.38 -0.02 2.60 16 42 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -68.87 349.08 2.13 -66.74 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.30 Total: 22.41 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 5.03 Total: -11.85 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -3.58 Total: -116.20 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 54.80 SS G_CDS: 1.70 Total: 56.50 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.25 Total: 3.69 kcal Total: -68.87 2.13 -66.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990592829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.609 kcal (2) G-P(sol) polarization free energy of solvation -68.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds