Wall clock time and date at job start Tue Mar 31 2020 12:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32770 * 124.71403 * 2 1 4 4 C 1.44422 * 113.08643 * 180.17708 * 3 2 1 5 5 C 1.47192 * 123.46514 * 179.80681 * 4 3 2 6 6 O 1.21643 * 119.99750 * 359.73018 * 5 4 3 7 7 N 1.34777 * 120.00208 * 179.45691 * 5 4 3 8 8 C 1.46504 * 119.99854 * 180.27760 * 7 5 4 9 9 C 1.51235 * 111.07250 * 281.64146 * 8 7 5 10 10 C 1.56593 * 104.17251 * 275.22753 * 9 8 7 11 11 C 1.56280 * 106.07282 * 353.43162 * 10 9 8 12 12 C 1.50517 * 101.75852 * 335.32104 * 11 10 9 13 13 H 1.09010 * 107.73543 * 293.23523 * 12 11 10 14 14 N 1.42695 * 128.18415 * 161.34259 * 12 11 10 15 15 C 1.36936 * 127.10146 * 28.24940 * 14 12 11 16 16 H 1.07998 * 120.00084 * 359.97434 * 15 14 12 17 17 C 1.38818 * 119.99880 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99905 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46979 * 90.00129 * 19 17 15 21 21 H 1.48497 * 109.47141 * 209.99803 * 19 17 15 22 22 H 1.48497 * 109.47203 * 330.00046 * 19 17 15 23 23 C 1.49297 * 105.79470 * 208.24390 * 14 12 11 24 24 C 1.52138 * 111.09648 * 61.01233 * 8 7 5 25 25 C 1.36014 * 113.07663 * 359.54102 * 4 3 2 26 26 S 1.70447 * 110.81627 * 0.24270 * 25 4 3 27 27 H 1.09001 * 109.47299 * 180.27325 * 1 2 3 28 28 H 1.09000 * 109.47237 * 300.28189 * 1 2 3 29 29 H 1.09005 * 109.46998 * 60.27468 * 1 2 3 30 30 H 1.08004 * 123.46056 * 359.97438 * 3 2 1 31 31 H 0.97000 * 119.99736 * 0.27034 * 7 5 4 32 32 H 1.08996 * 110.40906 * 34.88086 * 9 8 7 33 33 H 1.08998 * 110.40509 * 157.32039 * 9 8 7 34 34 H 1.08994 * 110.44385 * 234.07917 * 10 9 8 35 35 H 1.09001 * 109.79246 * 112.43257 * 10 9 8 36 36 H 1.08998 * 110.97034 * 217.20506 * 11 10 9 37 37 H 1.08997 * 110.97218 * 93.43316 * 11 10 9 38 38 H 0.96993 * 120.00186 * 180.02562 * 18 17 15 39 39 H 1.08989 * 110.05287 * 249.39522 * 23 14 12 40 40 H 1.09001 * 110.04318 * 127.91781 * 23 14 12 41 41 H 1.09007 * 111.14561 * 191.86951 * 24 8 7 42 42 H 1.08999 * 111.15100 * 316.08950 * 24 8 7 43 43 H 1.07993 * 124.58980 * 180.24593 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6776 0.8003 -0.0041 5 6 4.7201 1.8394 -0.0091 6 8 4.4071 3.0149 -0.0148 7 7 6.0214 1.4886 -0.0017 8 6 7.0589 2.5229 -0.0004 9 6 7.2495 3.1036 -1.3838 10 6 8.2465 2.1168 -2.0798 11 6 8.7003 1.1092 -0.9747 12 6 8.4830 1.9118 0.2800 13 1 9.1924 2.7394 0.2718 14 7 8.3676 1.4383 1.6211 15 6 8.9278 0.3053 2.1482 16 1 9.5326 -0.3377 1.5261 17 6 8.7183 -0.0165 3.4822 18 7 7.9816 0.7674 4.2405 19 14 9.4819 -1.5624 4.2010 20 1 10.8256 -1.2430 4.7467 21 1 8.6162 -2.0818 5.2900 22 1 9.6111 -2.5911 3.1380 23 6 7.5101 2.4331 2.3310 24 6 6.9552 3.4012 1.2375 25 6 3.9476 -0.5327 0.0029 26 16 2.5064 -1.4427 0.0077 27 1 -0.3634 -1.0277 0.0049 28 1 -0.3634 0.5182 0.8874 29 1 -0.3633 0.5096 -0.8925 30 1 1.8615 2.0940 -0.0004 31 1 6.2709 0.5512 0.0030 32 1 6.2975 3.1450 -1.9131 33 1 7.6942 4.0967 -1.3212 34 1 9.1077 2.6585 -2.4708 35 1 7.7390 1.5868 -2.8858 36 1 9.7517 0.8477 -1.0933 37 1 8.0748 0.2166 -0.9800 38 1 7.8356 0.5427 5.1727 39 1 8.1046 2.9893 3.0556 40 1 6.6866 1.9255 2.8334 41 1 7.5811 4.2887 1.1436 42 1 5.9194 3.6726 1.4416 43 1 4.9407 -0.9571 0.0052 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992321254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:26 Heat of formation + Delta-G solvation = 31.067824 kcal Electronic energy + Delta-G solvation = -25729.664115 eV Core-core repulsion = 22288.273984 eV Total energy + Delta-G solvation = -3441.390131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48514 -38.52938 -36.65930 -34.42444 -33.15774 -32.14112 -31.45076 -29.80626 -26.95277 -26.72343 -25.84624 -24.47545 -23.94467 -21.03003 -20.46680 -19.69452 -19.25816 -18.58370 -17.28627 -16.72512 -16.48337 -15.63565 -14.82194 -14.58794 -14.45059 -14.34994 -14.00424 -13.90089 -13.65715 -13.36065 -13.04988 -12.53392 -12.34532 -12.27340 -12.05423 -12.01734 -11.91211 -11.39982 -11.32104 -11.02108 -10.97901 -10.92476 -10.83330 -10.48282 -10.28620 -10.01879 -9.96074 -9.70606 -9.58037 -9.07581 -8.76213 -8.68106 -8.50525 -8.25729 -6.87475 -5.76086 -3.10968 0.88024 1.55206 1.95415 2.15340 3.35497 3.40576 3.42952 3.63599 3.80623 4.43191 4.62475 4.72876 5.11086 5.11913 5.20776 5.21415 5.39220 5.40549 5.45915 5.47615 5.60553 5.71533 5.76145 5.83046 5.94659 5.96690 5.97866 6.12569 6.13953 6.27311 6.30171 6.36171 6.39923 6.43077 6.49957 6.70233 6.84561 6.91257 7.23127 7.52358 7.60700 7.77803 8.08994 8.18720 8.74129 9.11471 9.78149 10.47897 11.35938 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.005138 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.599137 B = 5448.437035 C = 6843.262409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.209 4.209 3 C -0.089 4.089 4 C -0.142 4.142 5 C 0.576 3.424 6 O -0.546 6.546 7 N -0.682 5.682 8 C 0.132 3.868 9 C -0.112 4.112 10 C -0.117 4.117 11 C -0.115 4.115 12 C 0.159 3.841 13 H 0.022 0.978 14 N -0.583 5.583 15 C -0.233 4.233 16 H 0.079 0.921 17 C -0.003 4.003 18 N -0.916 5.916 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.179 3.821 24 C -0.143 4.143 25 C -0.208 4.208 26 S 0.171 5.829 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.151 0.849 31 H 0.399 0.601 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.253 0.747 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.237 -1.921 -11.619 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.326 4.326 3 C -0.118 4.118 4 C -0.160 4.160 5 C 0.361 3.639 6 O -0.426 6.426 7 N -0.332 5.332 8 C 0.044 3.956 9 C -0.151 4.151 10 C -0.155 4.155 11 C -0.154 4.154 12 C 0.048 3.952 13 H 0.040 0.960 14 N -0.306 5.306 15 C -0.361 4.361 16 H 0.096 0.904 17 C -0.200 4.200 18 N -0.563 5.563 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.055 3.945 24 C -0.181 4.181 25 C -0.346 4.346 26 S 0.437 5.563 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.168 0.832 31 H 0.234 0.766 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.711 -2.761 -11.359 15.855 hybrid contribution 1.123 0.213 0.621 1.301 sum -9.588 -2.548 -10.738 14.619 Atomic orbital electron populations 1.20291 0.87667 1.02676 1.03026 1.24320 1.00268 0.96107 1.11858 1.20983 0.90532 0.99577 1.00707 1.20393 0.94429 0.92618 1.08547 1.17506 0.82117 0.87703 0.76567 1.90720 1.82352 1.18447 1.51031 1.45528 1.04347 1.10200 1.73124 1.21559 0.90394 0.89954 0.93647 1.22053 0.99106 0.98535 0.95390 1.22967 0.98280 0.96726 0.97504 1.21852 1.00896 0.97903 0.94744 1.20816 0.92299 0.95050 0.87027 0.96043 1.43652 1.58076 1.25357 1.03562 1.18996 1.25047 0.98356 0.93675 0.90364 1.24794 1.00041 0.98758 0.96412 1.69925 1.42099 1.37740 1.06536 0.86191 0.78533 0.82639 0.78792 1.21583 1.21721 1.20720 1.21999 0.93824 0.87845 0.90796 1.22834 1.02014 0.97709 0.95583 1.25649 1.04536 0.97634 1.06804 1.82886 0.94067 1.08763 1.70626 0.91550 0.90589 0.90678 0.83158 0.76550 0.91500 0.91128 0.91843 0.92294 0.91669 0.91878 0.93666 0.94753 0.91799 0.91764 0.90412 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.35 36.00 0.37 -0.28 16 2 C -0.21 -2.47 6.44 -36.18 -0.23 -2.70 16 3 C -0.09 -1.26 9.95 -39.02 -0.39 -1.65 16 4 C -0.14 -2.28 5.98 -104.63 -0.63 -2.91 16 5 C 0.58 10.70 7.18 -12.62 -0.09 10.61 16 6 O -0.55 -11.39 14.91 5.24 0.08 -11.31 16 7 N -0.68 -12.41 4.45 -47.70 -0.21 -12.62 16 8 C 0.13 2.46 0.42 -130.70 -0.06 2.40 16 9 C -0.11 -1.77 6.24 -25.68 -0.16 -1.93 16 10 C -0.12 -1.63 6.95 -23.03 -0.16 -1.79 16 11 C -0.12 -1.89 6.46 -26.21 -0.17 -2.06 16 12 C 0.16 3.17 2.65 -68.73 -0.18 2.98 16 13 H 0.02 0.46 7.98 -51.92 -0.41 0.05 16 14 N -0.58 -14.17 3.16 -162.69 -0.51 -14.68 16 15 C -0.23 -6.15 10.29 -15.06 -0.15 -6.31 16 16 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 17 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 18 N -0.92 -26.48 10.55 55.49 0.59 -25.89 16 19 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.18 4.39 5.33 -0.76 0.00 4.38 16 24 C -0.14 -2.94 6.09 -25.44 -0.16 -3.10 16 25 C -0.21 -2.92 10.38 29.93 0.31 -2.61 16 26 S 0.17 1.96 23.00 -107.50 -2.47 -0.51 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.15 2.08 8.06 -52.48 -0.42 1.66 16 31 H 0.40 7.08 6.05 -40.82 -0.25 6.83 16 32 H 0.07 1.09 7.73 -51.93 -0.40 0.69 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.03 7.17 -51.93 -0.37 0.66 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.03 0.92 7.98 -51.94 -0.41 0.50 16 40 H 0.06 1.76 7.05 -51.93 -0.37 1.39 16 41 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 42 H 0.08 1.69 6.27 -51.93 -0.33 1.36 16 43 H 0.17 2.24 7.01 -52.49 -0.37 1.88 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -30.70 353.73 -10.28 -40.98 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.26 Total: 7.34 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.79 Total: -5.14 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.14 Total: -53.20 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.47 Total: -0.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.70 -10.28 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992321254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.049 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds