Wall clock time and date at job start Tue Mar 31 2020 12:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32770 * 124.71403 * 2 1 4 4 C 1.44422 * 113.08643 * 180.17708 * 3 2 1 5 5 C 1.47192 * 123.46514 * 179.80681 * 4 3 2 6 6 O 1.21643 * 119.99750 * 359.73018 * 5 4 3 7 7 N 1.34777 * 120.00208 * 179.45691 * 5 4 3 8 8 C 1.46504 * 119.99854 * 180.27760 * 7 5 4 9 9 C 1.51235 * 111.07250 * 281.64146 * 8 7 5 10 10 C 1.56593 * 104.17251 * 275.22753 * 9 8 7 11 11 C 1.56280 * 106.07282 * 353.43162 * 10 9 8 12 12 C 1.50517 * 101.75852 * 335.32104 * 11 10 9 13 13 H 1.09010 * 107.73543 * 293.23523 * 12 11 10 14 14 N 1.42695 * 128.18415 * 161.34259 * 12 11 10 15 15 C 1.36936 * 127.10146 * 28.24940 * 14 12 11 16 16 H 1.07998 * 120.00084 * 359.97434 * 15 14 12 17 17 C 1.38818 * 119.99880 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99905 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46979 * 90.00129 * 19 17 15 21 21 H 1.48497 * 109.47141 * 209.99803 * 19 17 15 22 22 H 1.48497 * 109.47203 * 330.00046 * 19 17 15 23 23 C 1.49297 * 105.79470 * 208.24390 * 14 12 11 24 24 C 1.52138 * 111.09648 * 61.01233 * 8 7 5 25 25 C 1.36014 * 113.07663 * 359.54102 * 4 3 2 26 26 S 1.70447 * 110.81627 * 0.24270 * 25 4 3 27 27 H 1.09001 * 109.47299 * 180.27325 * 1 2 3 28 28 H 1.09000 * 109.47237 * 300.28189 * 1 2 3 29 29 H 1.09005 * 109.46998 * 60.27468 * 1 2 3 30 30 H 1.08004 * 123.46056 * 359.97438 * 3 2 1 31 31 H 0.97000 * 119.99736 * 0.27034 * 7 5 4 32 32 H 1.08996 * 110.40906 * 34.88086 * 9 8 7 33 33 H 1.08998 * 110.40509 * 157.32039 * 9 8 7 34 34 H 1.08994 * 110.44385 * 234.07917 * 10 9 8 35 35 H 1.09001 * 109.79246 * 112.43257 * 10 9 8 36 36 H 1.08998 * 110.97034 * 217.20506 * 11 10 9 37 37 H 1.08997 * 110.97218 * 93.43316 * 11 10 9 38 38 H 0.96993 * 120.00186 * 180.02562 * 18 17 15 39 39 H 1.08989 * 110.05287 * 249.39522 * 23 14 12 40 40 H 1.09001 * 110.04318 * 127.91781 * 23 14 12 41 41 H 1.09007 * 111.14561 * 191.86951 * 24 8 7 42 42 H 1.08999 * 111.15100 * 316.08950 * 24 8 7 43 43 H 1.07993 * 124.58980 * 180.24593 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6776 0.8003 -0.0041 5 6 4.7201 1.8394 -0.0091 6 8 4.4071 3.0149 -0.0148 7 7 6.0214 1.4886 -0.0017 8 6 7.0589 2.5229 -0.0004 9 6 7.2495 3.1036 -1.3838 10 6 8.2465 2.1168 -2.0798 11 6 8.7003 1.1092 -0.9747 12 6 8.4830 1.9118 0.2800 13 1 9.1924 2.7394 0.2718 14 7 8.3676 1.4383 1.6211 15 6 8.9278 0.3053 2.1482 16 1 9.5326 -0.3377 1.5261 17 6 8.7183 -0.0165 3.4822 18 7 7.9816 0.7674 4.2405 19 14 9.4819 -1.5624 4.2010 20 1 10.8256 -1.2430 4.7467 21 1 8.6162 -2.0818 5.2900 22 1 9.6111 -2.5911 3.1380 23 6 7.5101 2.4331 2.3310 24 6 6.9552 3.4012 1.2375 25 6 3.9476 -0.5327 0.0029 26 16 2.5064 -1.4427 0.0077 27 1 -0.3634 -1.0277 0.0049 28 1 -0.3634 0.5182 0.8874 29 1 -0.3633 0.5096 -0.8925 30 1 1.8615 2.0940 -0.0004 31 1 6.2709 0.5512 0.0030 32 1 6.2975 3.1450 -1.9131 33 1 7.6942 4.0967 -1.3212 34 1 9.1077 2.6585 -2.4708 35 1 7.7390 1.5868 -2.8858 36 1 9.7517 0.8477 -1.0933 37 1 8.0748 0.2166 -0.9800 38 1 7.8356 0.5427 5.1727 39 1 8.1046 2.9893 3.0556 40 1 6.6866 1.9255 2.8334 41 1 7.5811 4.2887 1.1436 42 1 5.9194 3.6726 1.4416 43 1 4.9407 -0.9571 0.0052 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992321254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:25 Heat of formation + Delta-G solvation = 13.384409 kcal Electronic energy + Delta-G solvation = -25730.430925 eV Core-core repulsion = 22288.273984 eV Total energy + Delta-G solvation = -3442.156942 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99893 -39.90220 -37.87330 -36.17500 -34.53925 -33.71962 -32.82327 -31.47104 -28.57052 -27.75568 -27.27084 -26.03873 -25.53837 -22.44174 -21.92840 -21.26582 -20.53061 -20.01416 -18.49300 -18.37589 -17.87725 -17.27442 -16.38140 -16.25215 -15.77473 -15.72339 -15.66839 -15.19429 -14.67554 -14.56926 -14.22265 -14.09746 -13.97556 -13.56878 -13.29242 -13.09242 -13.05569 -12.90574 -12.88605 -12.84469 -12.62236 -12.18302 -12.13880 -12.06566 -11.89556 -11.79566 -11.56959 -11.37244 -11.13468 -10.74386 -10.61336 -9.97241 -9.74032 -9.32241 -8.88732 -7.84565 -5.20837 -0.21676 0.57743 0.91932 1.00856 1.46056 1.47404 1.55728 2.24516 2.45246 2.49322 3.07759 3.35343 3.70607 3.79148 3.86445 3.98294 4.09342 4.19415 4.28920 4.36205 4.40061 4.41301 4.52078 4.55563 4.61971 4.78297 4.78599 4.91745 4.93864 4.96235 5.03387 5.06716 5.10377 5.18266 5.22262 5.26691 5.39301 5.47465 5.54199 5.58484 5.65940 5.79049 6.16619 6.64428 7.02741 7.30395 7.75747 8.49011 9.27426 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.005138 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.599137 B = 5448.437035 C = 6843.262409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.200 4.200 3 C -0.117 4.117 4 C -0.172 4.172 5 C 0.572 3.428 6 O -0.577 6.577 7 N -0.682 5.682 8 C 0.138 3.862 9 C -0.108 4.108 10 C -0.101 4.101 11 C -0.111 4.111 12 C 0.147 3.853 13 H 0.018 0.982 14 N -0.596 5.596 15 C -0.232 4.232 16 H 0.091 0.909 17 C -0.063 4.063 18 N -0.952 5.952 19 Si 0.973 3.027 20 H -0.291 1.291 21 H -0.300 1.300 22 H -0.263 1.263 23 C 0.192 3.808 24 C -0.133 4.133 25 C -0.220 4.220 26 S 0.235 5.765 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.400 0.600 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.244 0.756 39 H 0.000 1.000 40 H 0.025 0.975 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 -3.738 -13.981 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.317 4.317 3 C -0.145 4.145 4 C -0.190 4.190 5 C 0.359 3.641 6 O -0.460 6.460 7 N -0.331 5.331 8 C 0.050 3.950 9 C -0.147 4.147 10 C -0.139 4.139 11 C -0.149 4.149 12 C 0.038 3.962 13 H 0.036 0.964 14 N -0.319 5.319 15 C -0.361 4.361 16 H 0.108 0.892 17 C -0.256 4.256 18 N -0.601 5.601 19 Si 0.802 3.198 20 H -0.218 1.218 21 H -0.227 1.227 22 H -0.187 1.187 23 C 0.068 3.932 24 C -0.172 4.172 25 C -0.359 4.359 26 S 0.501 5.499 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.162 0.838 31 H 0.236 0.764 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.043 0.957 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.062 -4.595 -13.774 18.254 hybrid contribution 1.193 0.753 1.370 1.967 sum -9.869 -3.841 -12.405 16.310 Atomic orbital electron populations 1.20461 0.85032 1.04281 1.04084 1.24802 1.02057 0.95692 1.09137 1.20977 0.90092 1.00287 1.03151 1.20330 0.94594 0.92729 1.11323 1.17934 0.82544 0.87990 0.75673 1.90683 1.82805 1.19849 1.52631 1.45532 1.04395 1.10134 1.73070 1.21561 0.89615 0.89442 0.94376 1.22056 0.99741 0.99622 0.93262 1.22900 0.98589 0.95714 0.96727 1.21876 1.01697 0.98143 0.93202 1.21045 0.93013 0.95828 0.86337 0.96426 1.43763 1.57762 1.24806 1.05560 1.19416 1.24139 0.98685 0.93837 0.89174 1.25593 1.01137 1.01771 0.97059 1.70158 1.44095 1.39621 1.06240 0.85158 0.77053 0.79636 0.77979 1.21785 1.22698 1.18717 1.21637 0.92140 0.88025 0.91405 1.22681 1.01038 0.97750 0.95701 1.25844 1.06305 0.97565 1.06161 1.82651 0.91660 1.07100 1.68468 0.89627 0.89867 0.89231 0.83764 0.76365 0.91859 0.90042 0.89501 0.90276 0.90695 0.91831 0.94636 0.98208 0.95681 0.90217 0.91804 0.80985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.35 71.23 0.74 -0.39 16 2 C -0.20 -4.38 6.44 24.51 0.16 -4.22 16 3 C -0.12 -3.32 9.95 22.67 0.23 -3.09 16 4 C -0.17 -5.57 5.98 -19.87 -0.12 -5.69 16 5 C 0.57 21.84 7.18 86.60 0.62 22.46 16 6 O -0.58 -24.98 14.91 -4.17 -0.06 -25.04 16 7 N -0.68 -25.11 4.45 -423.07 -1.88 -26.99 16 8 C 0.14 5.10 0.42 4.33 0.00 5.11 16 9 C -0.11 -3.22 6.24 31.27 0.20 -3.03 16 10 C -0.10 -2.48 6.95 32.99 0.23 -2.25 16 11 C -0.11 -3.37 6.46 30.93 0.20 -3.17 16 12 C 0.15 5.77 2.65 46.47 0.12 5.90 16 13 H 0.02 0.74 7.98 -2.38 -0.02 0.72 16 14 N -0.60 -29.49 3.16 -668.63 -2.11 -31.61 16 15 C -0.23 -12.34 10.29 84.04 0.86 -11.48 16 16 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 17 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 18 N -0.95 -57.43 10.55 21.65 0.23 -57.20 16 19 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 C 0.19 9.94 5.33 86.96 0.46 10.40 16 24 C -0.13 -5.67 6.09 31.43 0.19 -5.47 16 25 C -0.22 -6.04 10.38 67.30 0.70 -5.35 16 26 S 0.23 4.85 23.00 -56.49 -1.30 3.55 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.40 14.29 6.05 -92.71 -0.56 13.73 16 32 H 0.06 1.97 7.73 -2.39 -0.02 1.95 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.06 1.93 7.17 -2.39 -0.02 1.92 16 38 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.00 -0.02 7.98 -2.39 -0.02 -0.04 16 40 H 0.02 1.47 7.05 -2.39 -0.02 1.45 16 41 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 42 H 0.06 2.91 6.27 -2.39 -0.01 2.89 16 43 H 0.17 4.48 7.01 -2.91 -0.02 4.46 16 Total: -1.00 -69.44 353.73 2.42 -67.03 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.46 Total: 26.77 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 5.06 Total: -3.29 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -3.77 Total: -115.79 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.30 Total: 3.55 kcal Total: -69.44 2.42 -67.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992321254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.410 kcal (2) G-P(sol) polarization free energy of solvation -69.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds