Wall clock time and date at job start Tue Mar 31 2020 12:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37472 * 123.34641 * 2 1 4 4 C 1.33820 * 115.09451 * 179.76632 * 3 2 1 5 5 S 1.70611 * 110.95651 * 0.48599 * 4 3 2 6 6 C 1.36643 * 123.35519 * 180.29019 * 2 1 3 7 7 C 1.46585 * 125.45452 * 0.02562 * 6 2 1 8 8 O 1.21698 * 120.00339 * 0.02562 * 7 6 2 9 9 N 1.34776 * 119.99743 * 179.97438 * 7 6 2 10 10 C 1.46507 * 119.99891 * 180.02562 * 9 7 6 11 11 H 1.08997 * 115.55339 * 9.29881 * 10 9 7 12 12 C 1.53025 * 117.49998 * 223.60865 * 10 9 7 13 13 C 1.52815 * 117.50125 * 155.02448 * 10 9 7 14 14 C 1.53187 * 117.71431 * 359.86175 * 13 10 9 15 15 C 1.53353 * 108.77005 * 158.88702 * 14 13 10 16 16 N 1.46841 * 108.81469 * 51.30654 * 15 14 13 17 17 C 1.36939 * 120.38120 * 123.12176 * 16 15 14 18 18 H 1.08006 * 119.99733 * 208.87825 * 17 16 15 19 19 C 1.38809 * 120.00239 * 28.88076 * 17 16 15 20 20 N 1.31621 * 119.99897 * 17.86436 * 19 17 16 21 21 Si 1.86800 * 120.00058 * 197.85969 * 19 17 16 22 22 H 1.48502 * 109.47104 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46842 * 119.99964 * 21 19 17 24 24 H 1.48501 * 109.47120 * 239.99958 * 21 19 17 25 25 C 1.46846 * 119.23359 * 303.09748 * 16 15 14 26 26 C 1.53182 * 117.71544 * 215.09665 * 13 10 9 27 27 H 1.09004 * 109.47352 * 269.70633 * 1 2 3 28 28 H 1.08996 * 109.47355 * 149.71006 * 1 2 3 29 29 H 1.08999 * 109.47625 * 29.70719 * 1 2 3 30 30 H 1.07993 * 122.45691 * 359.97438 * 3 2 1 31 31 H 1.08006 * 124.51983 * 180.17813 * 4 3 2 32 32 H 0.97005 * 120.00364 * 0.02562 * 9 7 6 33 33 H 1.08995 * 117.50752 * 359.97438 * 12 10 9 34 34 H 1.09008 * 117.50014 * 145.01736 * 12 10 9 35 35 H 1.08995 * 109.58582 * 278.67302 * 14 13 10 36 36 H 1.08999 * 109.58612 * 39.10357 * 14 13 10 37 37 H 1.09000 * 109.58048 * 291.50900 * 15 14 13 38 38 H 1.09003 * 109.58048 * 171.10494 * 15 14 13 39 39 H 0.97005 * 119.99877 * 180.02562 * 20 19 17 40 40 H 1.08999 * 109.58156 * 297.10930 * 25 16 15 41 41 H 1.08998 * 109.58108 * 176.70731 * 25 16 15 42 42 H 1.08996 * 109.59028 * 320.90455 * 26 13 10 43 43 H 1.08998 * 109.58312 * 81.33266 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1484 0.0000 4 6 3.5870 0.9563 0.0049 5 16 3.9623 -0.7080 -0.0036 6 6 2.2583 -1.1413 -0.0058 7 6 1.7284 -2.5081 -0.0132 8 8 0.5258 -2.6945 -0.0151 9 7 2.5732 -3.5582 -0.0190 10 6 2.0436 -4.9242 -0.0270 11 1 0.9689 -5.0109 -0.1868 12 6 2.7043 -5.9436 0.9035 13 6 2.9344 -6.0230 -0.6054 14 6 4.3125 -5.6168 -1.1369 15 6 5.2148 -6.8564 -1.1668 16 7 4.5143 -7.9350 -1.8755 17 6 5.0829 -8.5269 -2.9717 18 1 4.4561 -8.9453 -3.7454 19 6 6.4646 -8.5892 -3.0885 20 7 7.2233 -8.4131 -2.0275 21 14 7.2473 -8.9232 -4.7514 22 1 6.1841 -9.0831 -5.7757 23 1 8.1249 -7.7844 -5.1230 24 1 8.0551 -10.1671 -4.6774 25 6 3.1974 -8.3719 -1.3947 26 6 2.2541 -7.1631 -1.3695 27 1 -0.3634 -0.0053 1.0277 28 1 -0.3634 -0.8873 -0.5183 29 1 -0.3634 0.8926 -0.5093 30 1 1.8200 2.1334 -0.0004 31 1 4.3204 1.7492 0.0084 32 1 3.5318 -3.4097 -0.0179 33 1 3.5331 -5.5982 1.5213 34 1 2.0641 -6.7011 1.3560 35 1 4.2113 -5.2140 -2.1446 36 1 4.7491 -4.8628 -0.4818 37 1 5.4355 -7.1723 -0.1472 38 1 6.1430 -6.6201 -1.6871 39 1 8.1890 -8.4563 -2.1091 40 1 3.2931 -8.7816 -0.3892 41 1 2.7979 -9.1331 -2.0649 42 1 1.3249 -7.4351 -0.8689 43 1 2.0421 -6.8437 -2.3898 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016477271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:39 Heat of formation + Delta-G solvation = 39.034787 kcal Electronic energy + Delta-G solvation = -24453.074987 eV Core-core repulsion = 21012.030329 eV Total energy + Delta-G solvation = -3441.044658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.12604 -38.83259 -37.68502 -35.47398 -33.24061 -31.56789 -31.06212 -30.11961 -28.65730 -27.88337 -24.35525 -23.95448 -22.64275 -22.44891 -21.23435 -20.50553 -19.08971 -18.34167 -18.15864 -16.60767 -16.08447 -15.91257 -15.20912 -15.13157 -14.80230 -14.15200 -13.98368 -13.71526 -13.58623 -13.41634 -13.30989 -13.00769 -12.67908 -12.50430 -12.32830 -12.27509 -11.97592 -11.72415 -11.51433 -11.38106 -11.10917 -10.98542 -10.74221 -10.49436 -10.28809 -10.02091 -9.90672 -9.71395 -9.59254 -9.37627 -9.09824 -8.68438 -8.47979 -8.43827 -6.64619 -5.79812 -3.22591 0.29589 1.25671 1.65087 2.14755 3.03403 3.07225 3.36190 3.44637 3.47088 4.18467 4.49396 4.60117 4.68130 4.96061 4.97716 5.07834 5.12947 5.14052 5.33925 5.38530 5.50492 5.56235 5.62863 5.68636 5.78987 5.84144 6.04352 6.06404 6.10500 6.11760 6.27740 6.32167 6.44187 6.55036 6.57016 6.64013 6.69793 6.82654 6.99645 7.32685 7.44422 7.63680 7.79725 8.12460 8.45757 9.21212 9.84867 10.41497 11.27963 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017857 B = 0.003105 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.669141 B = 9014.654700 C = 9951.771563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.022 4.022 3 C -0.150 4.150 4 C -0.228 4.228 5 S 0.201 5.799 6 C -0.273 4.273 7 C 0.594 3.406 8 O -0.530 6.530 9 N -0.691 5.691 10 C 0.070 3.930 11 H 0.134 0.866 12 C -0.182 4.182 13 C -0.096 4.096 14 C -0.106 4.106 15 C 0.174 3.826 16 N -0.590 5.590 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.149 3.851 26 C -0.098 4.098 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.144 0.856 31 H 0.169 0.831 32 H 0.399 0.601 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.018 0.982 38 H 0.090 0.910 39 H 0.253 0.747 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 17.792 6.425 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.038 4.038 3 C -0.181 4.181 4 C -0.366 4.366 5 S 0.470 5.530 6 C -0.394 4.394 7 C 0.381 3.619 8 O -0.409 6.409 9 N -0.340 5.340 10 C -0.036 4.036 11 H 0.152 0.848 12 C -0.220 4.220 13 C -0.098 4.098 14 C -0.145 4.145 15 C 0.048 3.952 16 N -0.312 5.312 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.023 3.977 26 C -0.137 4.137 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.162 0.838 31 H 0.187 0.813 32 H 0.235 0.765 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.036 0.964 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.789 16.804 6.416 19.601 hybrid contribution -0.105 1.006 -0.680 1.219 sum -7.894 17.810 5.736 20.308 Atomic orbital electron populations 1.20738 0.88671 1.03922 1.03037 1.19530 0.97912 0.90344 0.95972 1.19930 0.92567 0.99662 1.05975 1.25283 1.00707 1.01911 1.08690 1.83196 1.03930 0.98187 1.67735 1.24447 0.97348 0.97406 1.20152 1.16851 0.86151 0.82681 0.76242 1.90752 1.14307 1.85209 1.50666 1.45287 1.09442 1.05147 1.74108 1.21901 0.98008 0.77624 1.06040 0.84835 1.23543 1.03147 1.01405 0.93917 1.21972 0.96989 0.96573 0.94240 1.21829 0.93280 1.00047 0.99372 1.20742 0.94450 0.84439 0.95566 1.43982 1.16756 1.37918 1.32533 1.19242 0.89506 1.33272 0.96110 0.91718 1.25042 0.96970 1.00648 0.96997 1.70047 1.03924 1.53810 1.26808 0.86260 0.79225 0.77446 0.84081 1.20233 1.21576 1.21751 1.20859 0.86723 0.93076 0.97076 1.21692 0.97365 0.95542 0.99114 0.90718 0.88770 0.91722 0.83791 0.81346 0.76544 0.88898 0.88295 0.91973 0.93916 0.96372 0.89184 0.93722 0.96229 0.92629 0.92793 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.55 36.01 0.34 -0.74 16 2 C -0.02 -0.25 5.90 -105.48 -0.62 -0.87 16 3 C -0.15 -1.34 9.97 -41.41 -0.41 -1.75 16 4 C -0.23 -1.90 10.92 29.18 0.32 -1.58 16 5 S 0.20 1.95 22.16 -107.50 -2.38 -0.43 16 6 C -0.27 -3.39 6.45 -36.79 -0.24 -3.62 16 7 C 0.59 8.70 7.78 -12.89 -0.10 8.60 16 8 O -0.53 -8.96 13.81 5.19 0.07 -8.89 16 9 N -0.69 -9.67 5.34 -55.22 -0.29 -9.96 16 10 C 0.07 1.04 6.14 -68.01 -0.42 0.62 16 11 H 0.13 2.06 7.40 -51.93 -0.38 1.68 16 12 C -0.18 -2.65 9.86 -26.80 -0.26 -2.91 16 13 C -0.10 -1.59 1.94 -154.49 -0.30 -1.89 16 14 C -0.11 -1.94 5.37 -26.45 -0.14 -2.08 16 15 C 0.17 4.02 5.40 -3.67 -0.02 4.00 16 16 N -0.59 -14.49 2.94 -172.26 -0.51 -15.00 16 17 C -0.25 -6.82 9.54 -15.06 -0.14 -6.96 16 18 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 19 C 0.00 0.05 4.88 -17.43 -0.09 -0.03 16 20 N -0.90 -25.73 11.23 55.49 0.62 -25.10 16 21 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.15 3.08 6.52 -3.67 -0.02 3.06 16 26 C -0.10 -1.68 5.83 -26.46 -0.15 -1.84 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.18 6.01 -51.93 -0.31 0.87 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.40 5.10 6.23 -40.82 -0.25 4.84 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.10 1.34 8.14 -51.92 -0.42 0.92 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.04 0.68 6.75 -51.93 -0.35 0.33 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 2.34 5.93 -51.93 -0.31 2.03 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 42 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -30.61 358.24 -10.60 -41.21 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.22 Total: 4.38 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.26 Total: -8.01 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.18 Total: -50.06 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.07 Total: -8.89 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.38 Total: -0.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.61 -10.60 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016477271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.240 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds