Wall clock time and date at job start Tue Mar 31 2020 12:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37472 * 123.34641 * 2 1 4 4 C 1.33820 * 115.09451 * 179.76632 * 3 2 1 5 5 S 1.70611 * 110.95651 * 0.48599 * 4 3 2 6 6 C 1.36643 * 123.35519 * 180.29019 * 2 1 3 7 7 C 1.46585 * 125.45452 * 0.02562 * 6 2 1 8 8 O 1.21698 * 120.00339 * 0.02562 * 7 6 2 9 9 N 1.34776 * 119.99743 * 179.97438 * 7 6 2 10 10 C 1.46507 * 119.99891 * 180.02562 * 9 7 6 11 11 H 1.08997 * 115.55339 * 9.29881 * 10 9 7 12 12 C 1.53025 * 117.49998 * 223.60865 * 10 9 7 13 13 C 1.52815 * 117.50125 * 155.02448 * 10 9 7 14 14 C 1.53187 * 117.71431 * 359.86175 * 13 10 9 15 15 C 1.53353 * 108.77005 * 158.88702 * 14 13 10 16 16 N 1.46841 * 108.81469 * 51.30654 * 15 14 13 17 17 C 1.36939 * 120.38120 * 123.12176 * 16 15 14 18 18 H 1.08006 * 119.99733 * 208.87825 * 17 16 15 19 19 C 1.38809 * 120.00239 * 28.88076 * 17 16 15 20 20 N 1.31621 * 119.99897 * 17.86436 * 19 17 16 21 21 Si 1.86800 * 120.00058 * 197.85969 * 19 17 16 22 22 H 1.48502 * 109.47104 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46842 * 119.99964 * 21 19 17 24 24 H 1.48501 * 109.47120 * 239.99958 * 21 19 17 25 25 C 1.46846 * 119.23359 * 303.09748 * 16 15 14 26 26 C 1.53182 * 117.71544 * 215.09665 * 13 10 9 27 27 H 1.09004 * 109.47352 * 269.70633 * 1 2 3 28 28 H 1.08996 * 109.47355 * 149.71006 * 1 2 3 29 29 H 1.08999 * 109.47625 * 29.70719 * 1 2 3 30 30 H 1.07993 * 122.45691 * 359.97438 * 3 2 1 31 31 H 1.08006 * 124.51983 * 180.17813 * 4 3 2 32 32 H 0.97005 * 120.00364 * 0.02562 * 9 7 6 33 33 H 1.08995 * 117.50752 * 359.97438 * 12 10 9 34 34 H 1.09008 * 117.50014 * 145.01736 * 12 10 9 35 35 H 1.08995 * 109.58582 * 278.67302 * 14 13 10 36 36 H 1.08999 * 109.58612 * 39.10357 * 14 13 10 37 37 H 1.09000 * 109.58048 * 291.50900 * 15 14 13 38 38 H 1.09003 * 109.58048 * 171.10494 * 15 14 13 39 39 H 0.97005 * 119.99877 * 180.02562 * 20 19 17 40 40 H 1.08999 * 109.58156 * 297.10930 * 25 16 15 41 41 H 1.08998 * 109.58108 * 176.70731 * 25 16 15 42 42 H 1.08996 * 109.59028 * 320.90455 * 26 13 10 43 43 H 1.08998 * 109.58312 * 81.33266 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1484 0.0000 4 6 3.5870 0.9563 0.0049 5 16 3.9623 -0.7080 -0.0036 6 6 2.2583 -1.1413 -0.0058 7 6 1.7284 -2.5081 -0.0132 8 8 0.5258 -2.6945 -0.0151 9 7 2.5732 -3.5582 -0.0190 10 6 2.0436 -4.9242 -0.0270 11 1 0.9689 -5.0109 -0.1868 12 6 2.7043 -5.9436 0.9035 13 6 2.9344 -6.0230 -0.6054 14 6 4.3125 -5.6168 -1.1369 15 6 5.2148 -6.8564 -1.1668 16 7 4.5143 -7.9350 -1.8755 17 6 5.0829 -8.5269 -2.9717 18 1 4.4561 -8.9453 -3.7454 19 6 6.4646 -8.5892 -3.0885 20 7 7.2233 -8.4131 -2.0275 21 14 7.2473 -8.9232 -4.7514 22 1 6.1841 -9.0831 -5.7757 23 1 8.1249 -7.7844 -5.1230 24 1 8.0551 -10.1671 -4.6774 25 6 3.1974 -8.3719 -1.3947 26 6 2.2541 -7.1631 -1.3695 27 1 -0.3634 -0.0053 1.0277 28 1 -0.3634 -0.8873 -0.5183 29 1 -0.3634 0.8926 -0.5093 30 1 1.8200 2.1334 -0.0004 31 1 4.3204 1.7492 0.0084 32 1 3.5318 -3.4097 -0.0179 33 1 3.5331 -5.5982 1.5213 34 1 2.0641 -6.7011 1.3560 35 1 4.2113 -5.2140 -2.1446 36 1 4.7491 -4.8628 -0.4818 37 1 5.4355 -7.1723 -0.1472 38 1 6.1430 -6.6201 -1.6871 39 1 8.1890 -8.4563 -2.1091 40 1 3.2931 -8.7816 -0.3892 41 1 2.7979 -9.1331 -2.0649 42 1 1.3249 -7.4351 -0.8689 43 1 2.0421 -6.8437 -2.3898 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016477271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:38 Heat of formation + Delta-G solvation = 21.965769 kcal Electronic energy + Delta-G solvation = -24453.815155 eV Core-core repulsion = 21012.030329 eV Total energy + Delta-G solvation = -3441.784826 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26150 -40.01710 -38.66572 -37.09896 -34.63500 -33.30916 -31.84744 -31.76091 -30.10596 -28.99143 -26.23875 -24.77847 -24.08370 -23.57822 -22.78017 -21.78238 -20.13372 -19.70620 -19.16398 -18.32188 -17.15533 -17.05981 -16.73006 -16.19892 -16.03588 -15.66510 -15.39533 -15.10864 -14.79920 -14.67329 -14.58141 -14.20252 -14.01754 -13.78421 -13.35312 -13.29742 -13.07848 -13.05957 -12.92348 -12.72583 -12.61458 -12.53694 -12.29516 -11.98515 -11.84926 -11.78416 -11.39335 -11.27877 -11.05381 -10.71833 -10.49492 -9.97673 -9.61536 -9.41950 -8.61819 -7.85940 -5.31790 -0.50770 0.49225 0.92854 1.36845 1.45793 1.48375 1.58595 1.96193 2.05667 2.52036 2.93372 3.28695 3.61652 3.71441 3.79132 3.84685 3.96931 3.97180 4.11429 4.23474 4.38329 4.52144 4.60132 4.66598 4.70457 4.79046 4.83884 4.86459 4.91703 4.98587 5.00424 5.06415 5.09292 5.21087 5.28928 5.34880 5.37316 5.43874 5.52936 5.53980 5.66381 5.77538 6.35919 6.41963 7.04162 7.17241 7.89115 8.40122 9.19189 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017857 B = 0.003105 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.669141 B = 9014.654700 C = 9951.771563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.023 4.023 3 C -0.158 4.158 4 C -0.211 4.211 5 S 0.208 5.792 6 C -0.313 4.313 7 C 0.591 3.409 8 O -0.561 6.561 9 N -0.690 5.690 10 C 0.085 3.915 11 H 0.132 0.868 12 C -0.168 4.168 13 C -0.116 4.116 14 C -0.091 4.091 15 C 0.182 3.818 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.062 0.938 19 C -0.048 4.048 20 N -0.931 5.931 21 Si 0.963 3.037 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.292 1.292 25 C 0.146 3.854 26 C -0.086 4.086 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.172 0.828 31 H 0.201 0.799 32 H 0.404 0.596 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.000 1.000 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.019 0.981 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.041 19.949 6.717 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.040 4.040 3 C -0.189 4.189 4 C -0.349 4.349 5 S 0.477 5.523 6 C -0.432 4.432 7 C 0.380 3.620 8 O -0.442 6.442 9 N -0.339 5.339 10 C -0.021 4.021 11 H 0.149 0.851 12 C -0.206 4.206 13 C -0.117 4.117 14 C -0.130 4.130 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.080 0.920 19 C -0.244 4.244 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.194 1.194 23 H -0.216 1.216 24 H -0.219 1.219 25 C 0.020 3.980 26 C -0.125 4.125 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.189 0.811 31 H 0.218 0.782 32 H 0.241 0.759 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.322 18.967 6.712 21.773 hybrid contribution 0.044 0.385 -0.738 0.833 sum -8.278 19.352 5.974 21.880 Atomic orbital electron populations 1.20723 0.88549 1.03821 1.03183 1.19865 0.98389 0.90876 0.94828 1.20161 0.92654 1.00054 1.06026 1.25719 1.01243 1.01690 1.06214 1.83157 1.02082 0.99508 1.67602 1.24357 0.99167 0.96518 1.23205 1.17198 0.85802 0.83603 0.75391 1.90730 1.15496 1.85861 1.52152 1.45267 1.09750 1.04795 1.74078 1.21746 0.97476 0.77829 1.05063 0.85059 1.23631 1.03243 1.01261 0.92506 1.21835 0.96275 0.97702 0.95890 1.21555 0.93745 0.98153 0.99532 1.20530 0.94201 0.86038 0.93656 1.44248 1.17993 1.38550 1.32387 1.19523 0.89914 1.32887 0.96974 0.91987 1.25747 0.97428 1.01199 0.99999 1.70183 1.03793 1.55206 1.28536 0.85279 0.78234 0.76892 0.80467 1.19368 1.21551 1.21922 1.20987 0.85671 0.94666 0.96634 1.21527 0.97619 0.94169 0.99221 0.90369 0.91362 0.89276 0.81076 0.78206 0.75907 0.88301 0.86750 0.93195 0.91554 0.98162 0.92571 0.94091 0.96311 0.92877 0.89824 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 9.55 71.24 0.68 -1.35 16 2 C -0.02 -0.48 5.90 -20.42 -0.12 -0.60 16 3 C -0.16 -2.35 9.97 21.08 0.21 -2.13 16 4 C -0.21 -2.80 10.92 66.82 0.73 -2.07 16 5 S 0.21 3.65 22.16 -56.49 -1.25 2.40 16 6 C -0.31 -7.43 6.45 24.08 0.16 -7.27 16 7 C 0.59 17.07 7.78 86.42 0.67 17.74 16 8 O -0.56 -19.02 13.81 -4.34 -0.06 -19.08 16 9 N -0.69 -18.68 5.34 -446.84 -2.39 -21.06 16 10 C 0.08 2.40 6.14 44.94 0.28 2.68 16 11 H 0.13 3.88 7.40 -2.39 -0.02 3.86 16 12 C -0.17 -4.57 9.86 30.55 0.30 -4.27 16 13 C -0.12 -3.70 1.94 -52.17 -0.10 -3.80 16 14 C -0.09 -3.31 5.37 30.78 0.17 -3.15 16 15 C 0.18 8.58 5.40 86.43 0.47 9.05 16 16 N -0.61 -30.45 2.94 -698.89 -2.05 -32.50 16 17 C -0.26 -14.49 9.54 84.03 0.80 -13.69 16 18 H 0.06 3.38 7.89 -2.91 -0.02 3.35 16 19 C -0.05 -2.68 4.88 84.86 0.41 -2.27 16 20 N -0.93 -54.54 11.23 21.65 0.24 -54.29 16 21 Si 0.96 44.79 29.59 68.60 2.03 46.82 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 C 0.15 6.01 6.52 86.43 0.56 6.58 16 26 C -0.09 -2.89 5.83 30.77 0.18 -2.71 16 27 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.07 1.71 6.01 -2.39 -0.01 1.70 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.20 1.34 8.06 -2.91 -0.02 1.31 16 32 H 0.40 9.90 6.23 -92.70 -0.58 9.32 16 33 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16 34 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.07 6.75 -2.39 -0.02 2.05 16 37 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.06 3.02 5.93 -2.39 -0.01 3.01 16 39 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 2.16 7.92 -2.39 -0.02 2.14 16 42 H 0.08 2.30 8.10 -2.39 -0.02 2.28 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -67.70 358.24 2.36 -65.33 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.45 Total: 19.65 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.39 Total: -7.26 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -4.20 Total: -107.86 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.06 Total: -19.08 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.25 Total: 2.40 kcal Total: -67.70 2.36 -65.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016477271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.300 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds