Wall clock time and date at job start Tue Mar 31 2020 12:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33816 * 124.51970 * 2 1 4 4 C 1.37468 * 115.10085 * 180.02562 * 3 2 1 5 5 C 1.36645 * 113.29866 * 359.97438 * 4 3 2 6 6 C 1.46586 * 125.46152 * 180.02562 * 5 4 3 7 7 O 1.21700 * 119.99808 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00204 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00010 * 180.02562 * 8 6 5 10 10 H 1.08997 * 115.55400 * 9.42325 * 9 8 6 11 11 C 1.53028 * 117.50275 * 223.72713 * 9 8 6 12 12 C 1.52822 * 117.49868 * 155.10335 * 9 8 6 13 13 C 1.53181 * 117.71534 * 359.85633 * 12 9 8 14 14 C 1.53349 * 108.76813 * 158.89064 * 13 12 9 15 15 N 1.46842 * 108.81860 * 51.30457 * 14 13 12 16 16 C 1.36947 * 120.38011 * 123.11898 * 15 14 13 17 17 H 1.07995 * 119.99648 * 331.80335 * 16 15 14 18 18 C 1.38809 * 119.99747 * 151.80660 * 16 15 14 19 19 N 1.31616 * 120.00021 * 159.30529 * 18 16 15 20 20 Si 1.86805 * 119.99897 * 339.29768 * 18 16 15 21 21 H 1.48508 * 109.46967 * 94.25273 * 20 18 16 22 22 H 1.48500 * 109.47117 * 214.24780 * 20 18 16 23 23 H 1.48494 * 109.47243 * 334.25000 * 20 18 16 24 24 C 1.46844 * 119.23567 * 303.10179 * 15 14 13 25 25 C 1.53186 * 117.71284 * 215.09781 * 12 9 8 26 26 S 1.70616 * 124.52393 * 179.70172 * 2 1 3 27 27 H 1.08998 * 109.47270 * 90.00156 * 1 2 3 28 28 H 1.08996 * 109.47368 * 329.99909 * 1 2 3 29 29 H 1.09004 * 109.46795 * 210.00079 * 1 2 3 30 30 H 1.07999 * 122.44857 * 0.02562 * 3 2 1 31 31 H 1.08005 * 123.35588 * 180.02562 * 4 3 2 32 32 H 0.97005 * 119.99652 * 0.02562 * 8 6 5 33 33 H 1.09003 * 117.50333 * 0.02562 * 11 9 8 34 34 H 1.09006 * 117.50234 * 145.01596 * 11 9 8 35 35 H 1.08995 * 109.58773 * 278.67382 * 13 12 9 36 36 H 1.09002 * 109.58551 * 39.10828 * 13 12 9 37 37 H 1.09010 * 109.58253 * 291.51081 * 14 13 12 38 38 H 1.09000 * 109.58345 * 171.11045 * 14 13 12 39 39 H 0.96998 * 120.00068 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.58220 * 297.10717 * 24 15 14 41 41 H 1.09003 * 109.58101 * 176.69735 * 24 15 14 42 42 H 1.09002 * 109.58548 * 320.90849 * 25 12 9 43 43 H 1.09005 * 109.58935 * 81.32995 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 -0.0006 5 6 3.9493 -0.4490 -0.0005 6 6 5.3124 -0.9882 -0.0004 7 8 6.2659 -0.2319 0.0000 8 7 5.5097 -2.3214 -0.0008 9 6 6.8720 -2.8602 -0.0002 10 1 7.6659 -2.1311 0.1615 11 6 7.1690 -4.0318 -0.9388 12 6 7.0756 -4.2634 0.5700 13 6 5.8435 -5.0020 1.1017 14 6 6.1408 -6.5062 1.1226 15 7 7.4107 -6.7282 1.8258 16 6 7.4628 -7.5533 2.9175 17 1 6.5894 -7.6815 3.5396 18 6 8.6383 -8.2248 3.2245 19 7 8.8385 -8.6771 4.4441 20 14 9.9358 -8.4867 1.9064 21 1 10.9398 -7.3946 1.9763 22 1 10.6084 -9.7922 2.1263 23 1 9.2908 -8.4813 0.5688 24 6 8.6241 -6.0556 1.3445 25 6 8.3771 -4.5422 1.3283 26 16 2.4740 -1.4057 0.0073 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 0.8899 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.8428 2.0965 0.0004 31 1 4.3550 1.6704 -0.0002 32 1 4.7497 -2.9241 -0.0015 33 1 6.3508 -4.4015 -1.5569 34 1 8.1583 -4.0735 -1.3945 35 1 5.6199 -4.6596 2.1120 36 1 4.9913 -4.8070 0.4505 37 1 6.2195 -6.8774 0.1007 38 1 5.3388 -7.0300 1.6428 39 1 9.6598 -9.1467 4.6585 40 1 8.8565 -6.3986 0.3364 41 1 9.4564 -6.2827 2.0108 42 1 9.2061 -4.0420 0.8276 43 1 8.2901 -4.1751 2.3510 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016478644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:56 Heat of formation + Delta-G solvation = 43.236081 kcal Electronic energy + Delta-G solvation = -24216.713875 eV Core-core repulsion = 20775.851399 eV Total energy + Delta-G solvation = -3440.862476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.16138 -38.85213 -37.84770 -35.75323 -33.32925 -32.33214 -31.70260 -30.53221 -28.81416 -27.53148 -24.22020 -24.09406 -23.05523 -22.66756 -21.30235 -20.79744 -19.52038 -18.39205 -18.21598 -16.74081 -16.32301 -16.07549 -15.41896 -15.15421 -14.94489 -14.33323 -14.26723 -14.11617 -13.89595 -13.71317 -13.44221 -13.00833 -12.93908 -12.69055 -12.46046 -12.29800 -12.20467 -12.14446 -11.90247 -11.71273 -11.26039 -11.24382 -10.79578 -10.62596 -10.31417 -10.24662 -9.98416 -9.82435 -9.54855 -9.44329 -9.04104 -8.92702 -8.74408 -8.47116 -6.94821 -5.95030 -3.30950 0.19320 1.11434 1.53486 2.08100 2.91220 3.00133 3.32330 3.48771 3.51925 4.02365 4.36038 4.53094 4.58693 4.77113 4.78110 4.90990 4.95770 4.99419 5.04564 5.10973 5.22606 5.29008 5.42436 5.47008 5.63073 5.69954 5.81327 5.84657 5.90581 5.94433 6.03708 6.04063 6.14490 6.30669 6.34596 6.40070 6.45073 6.59952 6.68934 6.69524 6.94688 7.31597 7.97981 8.01290 8.33428 8.95329 9.72613 10.10600 11.20983 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.002817 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.402325 B = 9937.739120 C =10560.044726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.195 4.195 3 C -0.157 4.157 4 C -0.051 4.051 5 C -0.268 4.268 6 C 0.593 3.407 7 O -0.531 6.531 8 N -0.692 5.692 9 C 0.074 3.926 10 H 0.136 0.864 11 C -0.183 4.183 12 C -0.100 4.100 13 C -0.100 4.100 14 C 0.154 3.846 15 N -0.604 5.604 16 C -0.261 4.261 17 H 0.084 0.916 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.882 3.118 21 H -0.288 1.288 22 H -0.304 1.304 23 H -0.270 1.270 24 C 0.131 3.869 25 C -0.098 4.098 26 S 0.202 5.798 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.398 0.602 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.024 0.976 38 H 0.064 0.936 39 H 0.262 0.738 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.435 17.372 -11.924 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.315 4.315 3 C -0.188 4.188 4 C -0.084 4.084 5 C -0.388 4.388 6 C 0.380 3.620 7 O -0.409 6.409 8 N -0.341 5.341 9 C -0.031 4.031 10 H 0.154 0.846 11 C -0.221 4.221 12 C -0.102 4.102 13 C -0.139 4.139 14 C 0.027 3.973 15 N -0.327 5.327 16 C -0.389 4.389 17 H 0.102 0.898 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.713 3.287 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.006 3.994 25 C -0.138 4.138 26 S 0.469 5.531 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.162 0.838 31 H 0.171 0.829 32 H 0.234 0.766 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.983 16.230 -11.785 25.036 hybrid contribution 0.708 1.127 -0.714 1.510 sum -14.274 17.357 -12.498 25.715 Atomic orbital electron populations 1.20414 0.87300 1.03652 1.03150 1.24268 1.01633 0.97777 1.07787 1.19970 0.92600 0.99634 1.06575 1.20756 0.96209 0.95175 0.96266 1.24578 0.96790 0.98155 1.19272 1.16900 0.86767 0.82149 0.76213 1.90819 1.41819 1.57983 1.50314 1.45257 1.08453 1.06036 1.74340 1.21892 0.84646 0.91089 1.05472 0.84606 1.23596 1.03202 1.01754 0.93591 1.21959 0.98633 0.95171 0.94430 1.21638 0.93493 0.98470 1.00306 1.20854 0.89246 0.91808 0.95344 1.44275 1.03362 1.51875 1.33203 1.18926 1.00001 1.19459 1.00551 0.89795 1.25297 0.97891 0.98029 0.96332 1.69839 1.26494 1.41113 1.17650 0.86939 0.81745 0.76232 0.83811 1.21634 1.23209 1.19478 1.21294 0.90737 0.89855 0.97550 1.21696 0.93128 0.99194 0.99770 1.83072 0.94290 1.07578 1.68131 0.90315 0.90204 0.90923 0.83775 0.82903 0.76611 0.88781 0.88118 0.91156 0.93320 0.95823 0.91712 0.92777 0.95521 0.90915 0.92463 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.31 36.01 0.37 -0.06 16 2 C -0.19 -1.51 6.28 -35.86 -0.23 -1.74 16 3 C -0.16 -1.29 9.99 -41.41 -0.41 -1.70 16 4 C -0.05 -0.52 10.01 -40.44 -0.40 -0.93 16 5 C -0.27 -3.06 6.45 -36.79 -0.24 -3.30 16 6 C 0.59 8.33 7.78 -12.89 -0.10 8.23 16 7 O -0.53 -9.15 16.41 5.19 0.09 -9.06 16 8 N -0.69 -8.89 5.34 -55.22 -0.29 -9.19 16 9 C 0.07 1.04 6.13 -68.01 -0.42 0.63 16 10 H 0.14 2.05 7.40 -51.93 -0.38 1.66 16 11 C -0.18 -2.43 9.87 -26.75 -0.26 -2.69 16 12 C -0.10 -1.55 1.94 -154.45 -0.30 -1.85 16 13 C -0.10 -1.55 5.37 -26.46 -0.14 -1.70 16 14 C 0.15 2.91 6.51 -3.67 -0.02 2.88 16 15 N -0.60 -14.08 2.71 -172.26 -0.47 -14.54 16 16 C -0.26 -7.22 10.00 -15.06 -0.15 -7.37 16 17 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 18 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 19 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 20 Si 0.88 22.30 24.40 -169.99 -4.15 18.15 16 21 H -0.29 -7.05 6.66 56.52 0.38 -6.67 16 22 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 23 H -0.27 -6.68 6.65 56.52 0.38 -6.30 16 24 C 0.13 2.83 4.23 -3.67 -0.02 2.81 16 25 C -0.10 -1.74 5.83 -26.45 -0.15 -1.90 16 26 S 0.20 1.75 22.10 -107.50 -2.38 -0.63 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.15 1.50 8.06 -52.48 -0.42 1.07 16 32 H 0.40 4.40 6.23 -40.82 -0.25 4.14 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.61 6.75 -51.93 -0.35 0.26 16 37 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.06 1.22 7.92 -51.93 -0.41 0.80 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.03 0.57 7.27 -51.93 -0.38 0.19 16 41 H 0.07 1.73 4.31 -51.93 -0.22 1.51 16 42 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -32.72 356.89 -9.87 -42.60 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.26 Total: 2.41 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.57 Total: -8.09 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.01 Total: -50.75 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.15 Total: 18.15 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.38 Total: -0.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.72 -9.87 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016478644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.832 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds