Wall clock time and date at job start Tue Mar 31 2020 12:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33816 * 124.51970 * 2 1 4 4 C 1.37468 * 115.10085 * 180.02562 * 3 2 1 5 5 C 1.36645 * 113.29866 * 359.97438 * 4 3 2 6 6 C 1.46586 * 125.46152 * 180.02562 * 5 4 3 7 7 O 1.21700 * 119.99808 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00204 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00010 * 180.02562 * 8 6 5 10 10 H 1.08997 * 115.55400 * 9.42325 * 9 8 6 11 11 C 1.53028 * 117.50275 * 223.72713 * 9 8 6 12 12 C 1.52822 * 117.49868 * 155.10335 * 9 8 6 13 13 C 1.53181 * 117.71534 * 359.85633 * 12 9 8 14 14 C 1.53349 * 108.76813 * 158.89064 * 13 12 9 15 15 N 1.46842 * 108.81860 * 51.30457 * 14 13 12 16 16 C 1.36947 * 120.38011 * 123.11898 * 15 14 13 17 17 H 1.07995 * 119.99648 * 331.80335 * 16 15 14 18 18 C 1.38809 * 119.99747 * 151.80660 * 16 15 14 19 19 N 1.31616 * 120.00021 * 159.30529 * 18 16 15 20 20 Si 1.86805 * 119.99897 * 339.29768 * 18 16 15 21 21 H 1.48508 * 109.46967 * 94.25273 * 20 18 16 22 22 H 1.48500 * 109.47117 * 214.24780 * 20 18 16 23 23 H 1.48494 * 109.47243 * 334.25000 * 20 18 16 24 24 C 1.46844 * 119.23567 * 303.10179 * 15 14 13 25 25 C 1.53186 * 117.71284 * 215.09781 * 12 9 8 26 26 S 1.70616 * 124.52393 * 179.70172 * 2 1 3 27 27 H 1.08998 * 109.47270 * 90.00156 * 1 2 3 28 28 H 1.08996 * 109.47368 * 329.99909 * 1 2 3 29 29 H 1.09004 * 109.46795 * 210.00079 * 1 2 3 30 30 H 1.07999 * 122.44857 * 0.02562 * 3 2 1 31 31 H 1.08005 * 123.35588 * 180.02562 * 4 3 2 32 32 H 0.97005 * 119.99652 * 0.02562 * 8 6 5 33 33 H 1.09003 * 117.50333 * 0.02562 * 11 9 8 34 34 H 1.09006 * 117.50234 * 145.01596 * 11 9 8 35 35 H 1.08995 * 109.58773 * 278.67382 * 13 12 9 36 36 H 1.09002 * 109.58551 * 39.10828 * 13 12 9 37 37 H 1.09010 * 109.58253 * 291.51081 * 14 13 12 38 38 H 1.09000 * 109.58345 * 171.11045 * 14 13 12 39 39 H 0.96998 * 120.00068 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.58220 * 297.10717 * 24 15 14 41 41 H 1.09003 * 109.58101 * 176.69735 * 24 15 14 42 42 H 1.09002 * 109.58548 * 320.90849 * 25 12 9 43 43 H 1.09005 * 109.58935 * 81.32995 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 -0.0006 5 6 3.9493 -0.4490 -0.0005 6 6 5.3124 -0.9882 -0.0004 7 8 6.2659 -0.2319 0.0000 8 7 5.5097 -2.3214 -0.0008 9 6 6.8720 -2.8602 -0.0002 10 1 7.6659 -2.1311 0.1615 11 6 7.1690 -4.0318 -0.9388 12 6 7.0756 -4.2634 0.5700 13 6 5.8435 -5.0020 1.1017 14 6 6.1408 -6.5062 1.1226 15 7 7.4107 -6.7282 1.8258 16 6 7.4628 -7.5533 2.9175 17 1 6.5894 -7.6815 3.5396 18 6 8.6383 -8.2248 3.2245 19 7 8.8385 -8.6771 4.4441 20 14 9.9358 -8.4867 1.9064 21 1 10.9398 -7.3946 1.9763 22 1 10.6084 -9.7922 2.1263 23 1 9.2908 -8.4813 0.5688 24 6 8.6241 -6.0556 1.3445 25 6 8.3771 -4.5422 1.3283 26 16 2.4740 -1.4057 0.0073 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 0.8899 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.8428 2.0965 0.0004 31 1 4.3550 1.6704 -0.0002 32 1 4.7497 -2.9241 -0.0015 33 1 6.3508 -4.4015 -1.5569 34 1 8.1583 -4.0735 -1.3945 35 1 5.6199 -4.6596 2.1120 36 1 4.9913 -4.8070 0.4505 37 1 6.2195 -6.8774 0.1007 38 1 5.3388 -7.0300 1.6428 39 1 9.6598 -9.1467 4.6585 40 1 8.8565 -6.3986 0.3364 41 1 9.4564 -6.2827 2.0108 42 1 9.2061 -4.0420 0.8276 43 1 8.2901 -4.1751 2.3510 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016478644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:55 Heat of formation + Delta-G solvation = 22.677254 kcal Electronic energy + Delta-G solvation = -24217.605373 eV Core-core repulsion = 20775.851399 eV Total energy + Delta-G solvation = -3441.753974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27095 -40.00425 -38.67854 -37.30079 -34.64616 -33.69494 -32.85259 -32.04851 -30.35963 -28.27365 -26.05624 -24.81897 -24.52490 -23.57395 -22.84180 -21.96020 -20.39881 -19.84829 -19.07814 -18.40993 -17.57247 -17.01326 -16.94115 -16.16590 -16.04901 -15.95679 -15.51937 -15.20924 -14.89696 -14.84243 -14.56647 -14.39055 -14.06554 -13.96156 -13.87380 -13.47549 -13.31190 -13.02876 -12.96123 -12.74798 -12.61469 -12.46361 -12.25370 -12.13832 -11.90806 -11.62822 -11.50930 -11.39273 -11.25243 -10.81153 -10.67032 -9.90742 -9.60323 -9.54372 -8.86175 -8.15907 -5.47216 -0.55466 0.42443 0.85756 1.30988 1.33245 1.41899 1.51536 1.90921 2.05755 2.42768 2.87688 3.07233 3.35760 3.65392 3.69078 3.77198 3.86022 3.88514 3.99397 4.25545 4.36325 4.38072 4.49203 4.55925 4.68051 4.68911 4.73958 4.78074 4.83204 4.89674 4.90480 4.99393 5.05227 5.08390 5.09251 5.19103 5.19844 5.28135 5.38854 5.40781 5.49617 5.89195 6.14289 6.32111 6.94875 6.99827 7.65165 8.05422 9.04161 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.002817 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.402325 B = 9937.739120 C =10560.044726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.184 4.184 3 C -0.168 4.168 4 C -0.051 4.051 5 C -0.306 4.306 6 C 0.591 3.409 7 O -0.574 6.574 8 N -0.685 5.685 9 C 0.080 3.920 10 H 0.124 0.876 11 C -0.161 4.161 12 C -0.118 4.118 13 C -0.088 4.088 14 C 0.148 3.852 15 N -0.619 5.619 16 C -0.248 4.248 17 H 0.050 0.950 18 C -0.037 4.037 19 N -0.959 5.959 20 Si 0.947 3.053 21 H -0.277 1.277 22 H -0.313 1.313 23 H -0.256 1.256 24 C 0.127 3.873 25 C -0.092 4.092 26 S 0.226 5.774 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.168 0.832 31 H 0.148 0.852 32 H 0.408 0.592 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.261 0.739 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.312 18.714 -14.744 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.304 4.304 3 C -0.197 4.197 4 C -0.085 4.085 5 C -0.426 4.426 6 C 0.380 3.620 7 O -0.455 6.455 8 N -0.334 5.334 9 C -0.026 4.026 10 H 0.142 0.858 11 C -0.199 4.199 12 C -0.120 4.120 13 C -0.127 4.127 14 C 0.023 3.977 15 N -0.343 5.343 16 C -0.377 4.377 17 H 0.068 0.932 18 C -0.232 4.232 19 N -0.605 5.605 20 Si 0.776 3.224 21 H -0.204 1.204 22 H -0.242 1.242 23 H -0.180 1.180 24 C 0.002 3.998 25 C -0.131 4.131 26 S 0.494 5.506 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.185 0.815 31 H 0.166 0.834 32 H 0.245 0.755 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.901 17.585 -14.649 28.451 hybrid contribution 1.108 0.789 0.196 1.374 sum -15.793 18.374 -14.453 28.212 Atomic orbital electron populations 1.20580 0.85031 1.04789 1.04390 1.24741 1.03108 0.97151 1.05438 1.20161 0.91625 1.01038 1.06889 1.20957 0.97332 0.94824 0.95394 1.24438 0.96698 0.99201 1.22300 1.17264 0.87463 0.82068 0.75213 1.90786 1.43423 1.58879 1.52449 1.45171 1.08332 1.05988 1.73920 1.21722 0.85083 0.90319 1.05482 0.85797 1.23709 1.04610 0.99603 0.91958 1.21816 0.97252 0.96675 0.96238 1.21482 0.95078 0.95785 1.00403 1.21052 0.87017 0.94160 0.95425 1.44418 1.05567 1.51593 1.32732 1.18881 0.98621 1.19141 1.01099 0.93175 1.25938 1.00532 0.98679 0.98024 1.69976 1.27521 1.43328 1.19690 0.85877 0.79379 0.75671 0.81423 1.20423 1.24208 1.18042 1.21322 0.89157 0.92185 0.97129 1.21538 0.95622 0.96442 0.99496 1.82907 0.92680 1.07429 1.67609 0.88872 0.88729 0.90161 0.81458 0.83391 0.75470 0.86793 0.86983 0.92922 0.89543 0.94031 0.92405 0.93040 0.94189 0.93600 0.90080 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.31 71.24 0.73 0.18 16 2 C -0.18 -2.32 6.28 24.68 0.15 -2.16 16 3 C -0.17 -2.35 9.99 21.08 0.21 -2.14 16 4 C -0.05 -0.99 10.01 21.72 0.22 -0.77 16 5 C -0.31 -6.69 6.45 24.08 0.16 -6.53 16 6 C 0.59 16.21 7.78 86.42 0.67 16.88 16 7 O -0.57 -19.92 16.41 -4.35 -0.07 -20.00 16 8 N -0.68 -16.37 5.34 -446.84 -2.39 -18.76 16 9 C 0.08 2.07 6.13 44.94 0.28 2.35 16 10 H 0.12 3.60 7.40 -2.39 -0.02 3.58 16 11 C -0.16 -3.65 9.87 30.58 0.30 -3.35 16 12 C -0.12 -3.37 1.94 -52.14 -0.10 -3.47 16 13 C -0.09 -2.57 5.37 30.77 0.17 -2.40 16 14 C 0.15 5.37 6.51 86.43 0.56 5.93 16 15 N -0.62 -28.60 2.71 -698.90 -1.89 -30.49 16 16 C -0.25 -14.05 10.00 84.03 0.84 -13.21 16 17 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 18 C -0.04 -2.19 5.23 84.86 0.44 -1.75 16 19 N -0.96 -60.90 13.97 21.65 0.30 -60.59 16 20 Si 0.95 46.72 24.40 68.60 1.67 48.39 16 21 H -0.28 -13.01 6.66 99.48 0.66 -12.35 16 22 H -0.31 -15.75 7.11 99.48 0.71 -15.05 16 23 H -0.26 -11.91 6.65 99.48 0.66 -11.24 16 24 C 0.13 5.31 4.23 86.43 0.37 5.67 16 25 C -0.09 -3.13 5.83 30.77 0.18 -2.95 16 26 S 0.23 3.38 22.10 -56.49 -1.25 2.13 16 27 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.41 7.94 6.23 -92.70 -0.58 7.36 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 1.85 6.75 -2.39 -0.02 1.84 16 37 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.06 2.14 7.92 -2.39 -0.02 2.12 16 39 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.04 1.58 7.27 -2.39 -0.02 1.56 16 41 H 0.05 2.16 4.31 -2.39 -0.01 2.15 16 42 H 0.08 2.36 8.10 -2.39 -0.02 2.34 16 43 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -73.69 356.89 1.91 -71.78 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.36 Total: 15.26 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 5.18 Total: -7.72 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -3.98 Total: -109.84 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.07 Total: -20.00 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.67 Total: 48.39 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.25 Total: 2.13 kcal Total: -73.69 1.91 -71.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016478644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.456 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds