Wall clock time and date at job start Tue Mar 31 2020 12:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32765 * 123.45837 * 2 1 4 4 S 1.75500 * 110.57583 * 180.24499 * 3 2 1 5 5 C 1.70443 * 92.44736 * 359.73568 * 4 3 2 6 6 C 1.36014 * 110.81292 * 359.97438 * 5 4 3 7 7 C 1.47190 * 123.45953 * 179.97438 * 6 5 4 8 8 O 1.21637 * 120.00131 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00070 * 0.02911 * 7 6 5 10 10 C 1.46499 * 120.00136 * 179.97438 * 9 7 6 11 11 H 1.09000 * 115.56284 * 9.29775 * 10 9 7 12 12 C 1.53030 * 117.50552 * 223.58220 * 10 9 7 13 13 C 1.52819 * 117.50144 * 154.99782 * 10 9 7 14 14 C 1.53180 * 117.71545 * 359.86504 * 13 10 9 15 15 C 1.53349 * 108.76892 * 158.87389 * 14 13 10 16 16 N 1.46844 * 108.81070 * 51.30871 * 15 14 13 17 17 C 1.36940 * 120.37606 * 123.11293 * 16 15 14 18 18 H 1.07998 * 119.99252 * 210.70125 * 17 16 15 19 19 C 1.38807 * 120.00375 * 30.69922 * 17 16 15 20 20 N 1.31622 * 120.00154 * 199.02082 * 19 17 16 21 21 Si 1.86801 * 119.99999 * 19.02201 * 19 17 16 22 22 H 1.48498 * 109.47059 * 272.96128 * 21 19 17 23 23 H 1.48503 * 109.47024 * 32.96369 * 21 19 17 24 24 H 1.48496 * 109.47060 * 152.95887 * 21 19 17 25 25 C 1.46839 * 119.24260 * 303.37541 * 16 15 14 26 26 C 1.52875 * 109.07233 * 56.58591 * 25 16 15 27 27 H 1.08988 * 109.47428 * 270.22077 * 1 2 3 28 28 H 1.09000 * 109.46800 * 30.22030 * 1 2 3 29 29 H 1.09006 * 109.46777 * 150.21397 * 1 2 3 30 30 H 1.08004 * 124.71761 * 359.97438 * 3 2 1 31 31 H 1.07995 * 124.59628 * 179.97438 * 5 4 3 32 32 H 0.97008 * 119.99843 * 359.97438 * 9 7 6 33 33 H 1.09005 * 117.50066 * 145.04483 * 12 10 9 34 34 H 1.09004 * 117.52941 * 359.97438 * 12 10 9 35 35 H 1.08998 * 109.59110 * 39.09114 * 14 13 10 36 36 H 1.08998 * 109.58959 * 278.65906 * 14 13 10 37 37 H 1.08999 * 109.58446 * 291.51445 * 15 14 13 38 38 H 1.08997 * 109.58512 * 171.10922 * 15 14 13 39 39 H 0.96999 * 120.00083 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58204 * 176.42127 * 25 16 15 41 41 H 1.09000 * 109.58060 * 296.82863 * 25 16 15 42 42 H 1.08998 * 109.66431 * 189.04710 * 26 25 16 43 43 H 1.08996 * 109.44712 * 68.65348 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9498 0.7164 -0.0070 5 6 3.6411 -0.9599 -0.0020 6 6 2.3033 -1.2049 0.0052 7 6 1.7262 -2.5590 0.0104 8 8 0.5187 -2.7055 0.0163 9 7 2.5358 -3.6365 0.0086 10 6 1.9615 -4.9842 0.0142 11 1 0.8836 -5.0368 -0.1391 12 6 2.5936 -6.0179 0.9490 13 6 2.8121 -6.1162 -0.5606 14 6 4.1997 -5.7599 -1.1029 15 6 5.0604 -7.0288 -1.1279 16 7 4.3206 -8.0891 -1.8241 17 6 4.8629 -8.7078 -2.9188 18 1 4.2193 -9.0850 -3.6997 19 6 6.2396 -8.8500 -3.0247 20 7 6.7883 -9.0888 -4.1970 21 14 7.3135 -8.7027 -1.5034 22 1 7.6643 -7.2769 -1.2813 23 1 6.5746 -9.2203 -0.3238 24 1 8.5554 -9.4939 -1.6957 25 6 2.9902 -8.4744 -1.3364 26 6 2.0900 -7.2390 -1.3118 27 1 -0.3633 0.0040 1.0275 28 1 -0.3633 0.8880 -0.5173 29 1 -0.3633 -0.8920 -0.5105 30 1 1.8375 2.1103 -0.0004 31 1 4.4043 -1.7239 -0.0043 32 1 3.4988 -3.5196 0.0035 33 1 1.9315 -6.7505 1.4106 34 1 3.4371 -5.6957 1.5596 35 1 4.6647 -5.0156 -0.4564 36 1 4.1060 -5.3619 -2.1133 37 1 5.2764 -7.3439 -0.1071 38 1 5.9929 -6.8274 -1.6552 39 1 7.7503 -9.1885 -4.2709 40 1 2.5605 -9.2241 -2.0008 41 1 3.0742 -8.8816 -0.3288 42 1 1.1553 -7.4763 -0.8040 43 1 1.8828 -6.9206 -2.3334 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016559212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:25 Heat of formation + Delta-G solvation = 23.124856 kcal Electronic energy + Delta-G solvation = -24563.882368 eV Core-core repulsion = 21122.147804 eV Total energy + Delta-G solvation = -3441.734564 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35494 -40.09463 -38.14685 -37.22290 -34.73933 -33.68325 -32.12508 -31.79917 -30.24012 -28.59435 -26.05451 -25.61693 -24.52912 -23.38288 -22.76356 -21.55365 -20.18544 -19.75309 -18.73763 -18.36683 -18.04079 -17.27609 -16.90537 -16.09613 -15.93588 -15.63126 -15.39110 -15.31138 -14.70039 -14.57499 -14.39028 -14.26582 -14.20723 -14.10637 -13.66482 -13.60625 -13.43453 -13.04796 -12.98983 -12.81061 -12.62905 -12.38657 -12.29955 -12.10754 -11.84370 -11.65502 -11.50523 -11.30604 -10.97632 -10.75587 -10.61567 -9.93075 -9.71747 -9.25409 -8.82825 -8.16386 -5.51045 -0.25079 0.61474 0.94020 0.95651 1.28974 1.42293 1.52087 2.02936 2.21792 2.42247 2.92451 3.08240 3.35642 3.68052 3.71282 3.79788 3.86110 3.91770 4.01297 4.19592 4.36789 4.36893 4.50097 4.59867 4.63625 4.68376 4.71206 4.81107 4.81780 4.85333 4.92237 4.94202 4.96160 5.01271 5.12072 5.20574 5.27537 5.29745 5.47996 5.50855 5.56991 5.90302 6.14437 6.45238 6.95379 7.14677 7.64154 8.05046 9.03998 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.003156 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.201452 B = 8870.969088 C = 9846.240570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.078 4.078 3 C -0.244 4.244 4 S 0.241 5.759 5 C -0.212 4.212 6 C -0.182 4.182 7 C 0.577 3.423 8 O -0.569 6.569 9 N -0.686 5.686 10 C 0.085 3.915 11 H 0.127 0.873 12 C -0.163 4.163 13 C -0.120 4.120 14 C -0.088 4.088 15 C 0.124 3.876 16 N -0.619 5.619 17 C -0.251 4.251 18 H 0.045 0.955 19 C -0.036 4.036 20 N -0.960 5.960 21 Si 0.952 3.048 22 H -0.264 1.264 23 H -0.264 1.264 24 H -0.313 1.313 25 C 0.148 3.852 26 C -0.089 4.089 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.192 0.808 31 H 0.187 0.813 32 H 0.408 0.592 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.051 0.949 39 H 0.262 0.738 40 H 0.052 0.948 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 21.917 14.175 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 C -0.379 4.379 4 S 0.509 5.491 5 C -0.351 4.351 6 C -0.200 4.200 7 C 0.364 3.636 8 O -0.450 6.450 9 N -0.336 5.336 10 C -0.021 4.021 11 H 0.145 0.855 12 C -0.201 4.201 13 C -0.122 4.122 14 C -0.127 4.127 15 C 0.000 4.000 16 N -0.344 5.344 17 C -0.381 4.381 18 H 0.063 0.937 19 C -0.230 4.230 20 N -0.606 5.606 21 Si 0.781 3.219 22 H -0.190 1.190 23 H -0.189 1.189 24 H -0.242 1.242 25 C 0.023 3.977 26 C -0.128 4.128 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.210 0.790 31 H 0.204 0.796 32 H 0.246 0.754 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.003 22.673 14.096 27.601 hybrid contribution -0.040 -1.440 -0.078 1.443 sum -7.043 21.233 14.018 26.400 Atomic orbital electron populations 1.20581 0.88895 1.03335 1.02736 1.19990 0.97862 0.90314 1.00643 1.25657 0.97106 1.03181 1.11952 1.82913 1.04280 0.94640 1.67257 1.26002 0.99231 1.04972 1.04864 1.20122 0.93156 0.93488 1.13244 1.17919 0.86015 0.84363 0.75271 1.90709 1.15461 1.86952 1.51829 1.45204 1.10181 1.04331 1.73840 1.21701 0.97250 0.78274 1.04891 0.85539 1.23677 1.03514 1.01000 0.91941 1.21791 0.96262 0.97883 0.96243 1.21452 0.93583 0.97333 1.00362 1.21393 0.94758 0.88583 0.95306 1.44397 1.17689 1.39531 1.32748 1.18849 0.90772 1.32459 0.96044 0.93747 1.26023 0.98305 0.99565 0.99126 1.69971 1.11188 1.54846 1.24618 0.85859 0.77291 0.77640 0.81137 1.19032 1.18871 1.24168 1.20945 0.84267 0.95093 0.97390 1.21449 0.97830 0.94259 0.99295 0.91116 0.89959 0.91607 0.79039 0.79613 0.75400 0.86673 0.87546 0.90038 0.92960 0.94460 0.93103 0.92948 0.92909 0.94235 0.89405 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 9.54 71.24 0.68 -1.21 16 2 C -0.08 -1.54 6.01 -19.46 -0.12 -1.66 16 3 C -0.24 -3.44 10.91 66.64 0.73 -2.71 16 4 S 0.24 2.88 23.02 -56.49 -1.30 1.58 16 5 C -0.21 -3.38 10.38 67.30 0.70 -2.68 16 6 C -0.18 -3.94 5.98 -19.87 -0.12 -4.06 16 7 C 0.58 15.27 7.79 86.60 0.67 15.95 16 8 O -0.57 -18.53 13.78 -4.15 -0.06 -18.59 16 9 N -0.69 -15.88 5.31 -446.26 -2.37 -18.25 16 10 C 0.08 2.12 6.14 44.94 0.28 2.39 16 11 H 0.13 3.46 7.40 -2.39 -0.02 3.44 16 12 C -0.16 -3.63 9.86 30.55 0.30 -3.33 16 13 C -0.12 -3.36 1.94 -52.17 -0.10 -3.46 16 14 C -0.09 -2.76 5.37 30.77 0.17 -2.60 16 15 C 0.12 5.00 4.23 86.43 0.37 5.37 16 16 N -0.62 -28.66 2.68 -699.84 -1.87 -30.54 16 17 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 18 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 19 C -0.04 -2.08 5.24 84.86 0.44 -1.63 16 20 N -0.96 -60.54 13.97 21.65 0.30 -60.24 16 21 Si 0.95 45.80 24.44 68.60 1.68 47.48 16 22 H -0.26 -11.61 6.39 99.48 0.64 -10.97 16 23 H -0.26 -12.21 7.02 99.48 0.70 -11.52 16 24 H -0.31 -15.39 7.11 99.48 0.71 -14.69 16 25 C 0.15 5.58 6.48 86.27 0.56 6.14 16 26 C -0.09 -2.76 5.81 30.61 0.18 -2.58 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 29 H 0.07 1.66 6.03 -2.38 -0.01 1.65 16 30 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 31 H 0.19 2.15 7.01 -2.91 -0.02 2.13 16 32 H 0.41 7.65 5.62 -92.70 -0.52 7.13 16 33 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.08 1.96 6.75 -2.39 -0.02 1.94 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.42 7.44 -2.39 -0.02 1.40 16 38 H 0.05 2.28 4.36 -2.39 -0.01 2.27 16 39 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 40 H 0.05 2.07 7.92 -2.39 -0.02 2.05 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -72.54 351.44 2.38 -70.16 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.43 Total: 17.96 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 5.57 Total: -9.56 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.94 Total: -109.02 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.06 Total: -18.59 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.68 Total: 47.48 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.30 Total: 1.58 kcal Total: -72.54 2.38 -70.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016559212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.287 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds