Wall clock time and date at job start Tue Mar 31 2020 12:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32769 * 124.70994 * 2 1 4 4 C 1.44427 * 113.08047 * 179.85456 * 3 2 1 5 5 C 1.47194 * 123.45820 * 180.19482 * 4 3 2 6 6 O 1.21640 * 119.99820 * 0.22502 * 5 4 3 7 7 N 1.34769 * 120.00110 * 180.22761 * 5 4 3 8 8 C 1.46500 * 120.00379 * 179.97438 * 7 5 4 9 9 C 1.53143 * 109.43511 * 275.22310 * 8 7 5 10 10 C 1.53698 * 108.87699 * 186.04005 * 9 8 7 11 11 H 1.09003 * 112.58417 * 187.92986 * 10 9 8 12 12 C 1.54614 * 107.83424 * 312.22761 * 10 9 8 13 13 C 1.54306 * 104.74892 * 88.66575 * 12 10 9 14 14 C 1.54611 * 104.75310 * 0.02562 * 13 12 10 15 15 H 1.09001 * 112.18622 * 147.40826 * 14 13 12 16 16 C 1.53147 * 109.43649 * 155.00123 * 8 7 5 17 17 N 1.48297 * 104.25922 * 25.14323 * 14 13 12 18 18 C 1.36935 * 128.21343 * 138.35682 * 17 14 13 19 19 H 1.07993 * 120.00054 * 344.73859 * 18 17 14 20 20 C 1.38820 * 120.00011 * 164.72940 * 18 17 14 21 21 N 1.31615 * 119.99770 * 350.28768 * 20 18 17 22 22 Si 1.86790 * 119.99731 * 170.28490 * 20 18 17 23 23 H 1.48508 * 109.47150 * 94.71780 * 22 20 18 24 24 H 1.48500 * 109.47350 * 214.71766 * 22 20 18 25 25 H 1.48492 * 109.47502 * 334.71770 * 22 20 18 26 26 C 1.36001 * 113.08223 * 0.42489 * 4 3 2 27 27 S 1.70450 * 110.81443 * 359.76977 * 26 4 3 28 28 H 1.09000 * 109.46878 * 179.73022 * 1 2 3 29 29 H 1.08992 * 109.47267 * 59.72775 * 1 2 3 30 30 H 1.09002 * 109.47282 * 299.72411 * 1 2 3 31 31 H 1.08004 * 123.45886 * 0.02562 * 3 2 1 32 32 H 0.97006 * 119.99556 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.43326 * 35.09039 * 8 7 5 34 34 H 1.08997 * 109.56946 * 305.85588 * 9 8 7 35 35 H 1.08998 * 109.56878 * 66.22279 * 9 8 7 36 36 H 1.09003 * 110.37952 * 329.84460 * 12 10 9 37 37 H 1.08995 * 110.38184 * 207.48558 * 12 10 9 38 38 H 1.09000 * 110.38059 * 241.18318 * 13 12 10 39 39 H 1.08994 * 110.47641 * 118.86943 * 13 12 10 40 40 H 1.09004 * 109.56695 * 293.78054 * 16 8 7 41 41 H 1.08999 * 109.56999 * 54.14061 * 16 8 7 42 42 H 0.96997 * 120.00040 * 179.97438 * 21 20 18 43 43 H 1.07998 * 124.59699 * 179.74030 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 0.0034 5 6 4.7201 1.8395 0.0082 6 8 4.4070 3.0149 0.0137 7 7 6.0213 1.4888 0.0065 8 6 7.0589 2.5230 0.0108 9 6 7.3267 2.9820 -1.4255 10 6 8.5182 3.9530 -1.4232 11 1 8.6757 4.4246 -2.3932 12 6 8.2816 4.9902 -0.3012 13 6 8.9084 4.3562 0.9583 14 6 9.4653 2.9959 0.4788 15 1 10.3654 2.7056 1.0207 16 6 8.3439 1.9533 0.6185 17 7 9.7077 3.1910 -0.9711 18 6 10.7763 2.7681 -1.7158 19 1 11.6812 2.4420 -1.2249 20 6 10.6962 2.7583 -3.1016 21 7 9.5408 2.9699 -3.6955 22 14 12.2281 2.4450 -4.1234 23 1 12.3083 1.0022 -4.4657 24 1 12.1632 3.2470 -5.3716 25 1 13.4307 2.8368 -3.3455 26 6 3.9477 -0.5326 -0.0034 27 16 2.5065 -1.4426 -0.0075 28 1 -0.3633 -1.0277 -0.0048 29 1 -0.3633 0.5180 -0.8875 30 1 -0.3634 0.5095 0.8925 31 1 1.8614 2.0940 0.0004 32 1 6.2709 0.5514 0.0017 33 1 6.7220 3.3722 0.6054 34 1 7.5611 2.1180 -2.0472 35 1 6.4444 3.4877 -1.8177 36 1 7.2140 5.1526 -0.1534 37 1 8.7797 5.9295 -0.5414 38 1 8.1491 4.2067 1.7259 39 1 9.7145 4.9829 1.3397 40 1 8.1816 1.7307 1.6731 41 1 8.6248 1.0421 0.0903 42 1 9.4849 2.9634 -4.6638 43 1 4.9408 -0.9571 -0.0064 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021412143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:43 Heat of formation + Delta-G solvation = -0.415924 kcal Electronic energy + Delta-G solvation = -25057.861853 eV Core-core repulsion = 21615.106484 eV Total energy + Delta-G solvation = -3442.755369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55227 -40.27159 -38.02096 -35.97768 -34.55881 -33.18500 -31.94293 -31.12839 -30.94628 -27.61161 -26.72104 -25.62817 -24.92842 -23.17091 -21.74051 -20.98138 -20.55364 -20.06859 -18.90450 -18.23423 -17.97780 -17.23230 -16.67531 -16.07469 -15.87308 -15.65325 -14.97783 -14.75358 -14.64577 -14.50397 -14.47237 -14.00743 -13.79891 -13.66985 -13.31136 -13.17551 -13.14398 -12.95757 -12.90612 -12.81677 -12.60272 -12.44640 -12.29057 -11.96565 -11.93217 -11.41697 -11.34756 -11.14629 -11.01901 -10.97542 -10.62046 -9.99592 -9.75490 -9.33438 -8.76887 -7.81279 -5.16596 -0.24004 0.56967 0.90310 0.96725 1.47231 1.49123 1.57712 2.20711 2.36378 2.52058 3.36759 3.55881 3.74681 3.90677 3.99462 4.09999 4.18266 4.26525 4.33398 4.38521 4.40153 4.46232 4.50562 4.57106 4.74904 4.77410 4.85756 4.90669 4.98675 5.02619 5.10117 5.13337 5.17025 5.19156 5.27016 5.31283 5.37398 5.55161 5.56665 5.63239 5.75886 5.84358 6.27927 6.57204 7.09935 7.22774 7.78022 8.58987 9.29760 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018761 B = 0.003237 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.074497 B = 8648.315257 C = 9308.310759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.202 4.202 3 C -0.120 4.120 4 C -0.174 4.174 5 C 0.569 3.431 6 O -0.584 6.584 7 N -0.709 5.709 8 C 0.159 3.841 9 C -0.103 4.103 10 C 0.176 3.824 11 H 0.064 0.936 12 C -0.138 4.138 13 C -0.120 4.120 14 C 0.143 3.857 15 H 0.083 0.917 16 C -0.123 4.123 17 N -0.603 5.603 18 C -0.229 4.229 19 H 0.080 0.920 20 C -0.060 4.060 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.289 1.289 24 H -0.300 1.300 25 H -0.270 1.270 26 C -0.216 4.216 27 S 0.244 5.756 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.406 0.594 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.022 0.978 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.243 0.757 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.137 -9.806 11.380 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.319 4.319 3 C -0.148 4.148 4 C -0.192 4.192 5 C 0.356 3.644 6 O -0.466 6.466 7 N -0.358 5.358 8 C 0.055 3.945 9 C -0.144 4.144 10 C 0.069 3.931 11 H 0.082 0.918 12 C -0.177 4.177 13 C -0.159 4.159 14 C 0.035 3.965 15 H 0.101 0.899 16 C -0.163 4.163 17 N -0.324 5.324 18 C -0.358 4.358 19 H 0.098 0.902 20 C -0.254 4.254 21 N -0.585 5.585 22 Si 0.799 3.201 23 H -0.216 1.216 24 H -0.227 1.227 25 H -0.195 1.195 26 C -0.354 4.354 27 S 0.511 5.489 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.158 0.842 32 H 0.242 0.758 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.052 0.948 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.525 -10.575 11.154 21.847 hybrid contribution 1.418 1.278 -1.309 2.315 sum -14.107 -9.298 9.845 19.554 Atomic orbital electron populations 1.20464 0.85283 1.04303 1.03996 1.24788 1.02056 0.95949 1.09105 1.21003 0.90418 1.00241 1.03176 1.20209 0.94161 0.92769 1.12077 1.18101 0.82818 0.88040 0.75433 1.90734 1.82857 1.20555 1.52414 1.46030 1.05090 1.10824 1.73891 1.21057 0.86849 0.90372 0.96241 1.22123 0.97016 0.99629 0.95605 1.21324 0.85460 0.90260 0.96069 0.91778 1.22696 0.99566 0.98512 0.96905 1.22584 1.00044 0.96737 0.96537 1.21792 0.95465 0.93645 0.85555 0.89916 1.22375 0.94214 0.99407 1.00326 1.45371 1.20658 1.62216 1.04197 1.19317 0.91589 1.36436 0.88479 0.90236 1.25563 0.99125 1.02875 0.97854 1.70104 1.23927 1.56591 1.07842 0.85201 0.79839 0.76977 0.78084 1.21650 1.22695 1.19518 1.25939 1.06817 0.97051 1.05623 1.82713 0.91548 1.06593 1.68080 0.89524 0.89892 0.89523 0.84209 0.75817 0.90115 0.94347 0.95900 0.91944 0.92950 0.90135 0.91364 0.89540 0.92826 0.94753 0.79608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.35 71.24 0.74 -0.20 16 2 C -0.20 -3.69 6.44 24.51 0.16 -3.53 16 3 C -0.12 -3.01 9.95 22.67 0.23 -2.79 16 4 C -0.17 -4.80 5.98 -19.87 -0.12 -4.92 16 5 C 0.57 19.84 7.75 86.60 0.67 20.51 16 6 O -0.58 -24.90 16.46 -4.16 -0.07 -24.97 16 7 N -0.71 -22.91 5.05 -445.56 -2.25 -25.16 16 8 C 0.16 5.87 2.10 45.09 0.09 5.97 16 9 C -0.10 -4.76 5.11 30.88 0.16 -4.60 16 10 C 0.18 8.56 3.13 45.42 0.14 8.71 16 11 H 0.06 3.68 6.37 -2.39 -0.02 3.66 16 12 C -0.14 -5.50 5.98 31.59 0.19 -5.31 16 13 C -0.12 -4.08 5.98 31.59 0.19 -3.90 16 14 C 0.14 5.43 4.32 45.45 0.20 5.62 16 15 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 16 C -0.12 -4.16 5.09 30.90 0.16 -4.01 16 17 N -0.60 -29.43 2.82 -637.02 -1.80 -31.23 16 18 C -0.23 -12.35 10.38 84.04 0.87 -11.48 16 19 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 20 C -0.06 -3.35 5.42 84.86 0.46 -2.89 16 21 N -0.94 -55.37 10.61 21.65 0.23 -55.14 16 22 Si 0.97 45.28 29.56 68.60 2.03 47.31 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 C -0.22 -4.42 10.38 67.30 0.70 -3.72 16 27 S 0.24 3.73 23.00 -56.49 -1.30 2.43 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.41 10.72 7.10 -92.70 -0.66 10.07 16 33 H 0.08 3.10 4.96 -2.39 -0.01 3.08 16 34 H 0.04 2.01 7.99 -2.39 -0.02 1.99 16 35 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 2.42 7.04 -2.39 -0.02 2.40 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 2.36 7.04 -2.39 -0.02 2.35 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.19 2.99 7.01 -2.91 -0.02 2.97 16 Total: -1.00 -70.39 352.17 2.04 -68.35 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.37 Total: 24.94 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 4.83 Total: -6.53 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -3.82 Total: -111.53 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.07 Total: -24.97 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.30 Total: 2.43 kcal Total: -70.39 2.04 -68.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021412143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.931 kcal (2) G-P(sol) polarization free energy of solvation -70.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds