Wall clock time and date at job start Tue Mar 31 2020 12:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33820 * 124.52603 * 2 1 4 4 C 1.37472 * 115.09838 * 179.72407 * 3 2 1 5 5 C 1.36640 * 113.29998 * 0.46324 * 4 3 2 6 6 C 1.46581 * 125.45723 * 179.83579 * 5 4 3 7 7 O 1.21701 * 120.00024 * 6.99890 * 6 5 4 8 8 N 1.34779 * 119.99925 * 187.00270 * 6 5 4 9 9 C 1.48340 * 128.19742 * 356.90164 * 8 6 5 10 10 C 1.54462 * 104.30744 * 138.25134 * 9 8 6 11 11 H 1.08999 * 111.92936 * 263.69266 * 10 9 8 12 12 C 1.54149 * 108.79942 * 138.54671 * 10 9 8 13 13 C 1.55144 * 104.43298 * 224.24909 * 12 10 9 14 14 C 1.54836 * 102.72765 * 38.09750 * 13 12 10 15 15 H 1.08998 * 110.56328 * 80.64839 * 14 13 12 16 16 N 1.46504 * 110.45436 * 203.15430 * 14 13 12 17 17 C 1.36936 * 120.00238 * 269.93042 * 16 14 13 18 18 H 1.07994 * 119.99895 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99881 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00016 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47197 * 89.99930 * 21 19 17 23 23 H 1.48503 * 109.47535 * 209.99902 * 21 19 17 24 24 H 1.48498 * 109.47225 * 329.99899 * 21 19 17 25 25 C 1.54145 * 104.34812 * 321.87470 * 14 13 12 26 26 H 1.08999 * 112.65057 * 260.67700 * 25 14 13 27 27 C 1.48338 * 128.20008 * 176.92676 * 8 6 5 28 28 S 1.70617 * 124.52142 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47135 * 299.99812 * 1 2 3 31 31 H 1.09007 * 109.47170 * 59.99005 * 1 2 3 32 32 H 1.07998 * 122.44836 * 359.96596 * 3 2 1 33 33 H 1.08007 * 123.34563 * 180.27110 * 4 3 2 34 34 H 1.09000 * 110.46427 * 256.95722 * 9 8 6 35 35 H 1.09000 * 110.46540 * 19.54084 * 9 8 6 36 36 H 1.08994 * 110.46120 * 342.75667 * 12 10 9 37 37 H 1.09000 * 110.45624 * 105.32490 * 12 10 9 38 38 H 1.08998 * 110.66808 * 279.82711 * 13 12 10 39 39 H 1.08998 * 110.84976 * 156.45045 * 13 12 10 40 40 H 0.97007 * 119.99365 * 89.93127 * 16 14 13 41 41 H 0.97008 * 120.00110 * 180.02562 * 20 19 17 42 42 H 1.09004 * 110.46373 * 340.45490 * 27 8 6 43 43 H 1.08991 * 110.47041 * 102.91221 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8773 0.0060 5 6 3.9492 -0.4492 0.0008 6 6 5.3122 -0.9884 0.0017 7 8 6.2626 -0.2401 0.1360 8 7 5.5131 -2.3129 -0.1461 9 6 4.4970 -3.3878 -0.2588 10 6 5.0430 -4.3145 -1.3675 11 1 4.6062 -4.0870 -2.3399 12 6 4.8199 -5.7799 -0.9445 13 6 6.1568 -6.4889 -1.2867 14 6 7.2143 -5.4210 -0.9142 15 1 7.3984 -5.4230 0.1602 16 7 8.4609 -5.6578 -1.6464 17 6 9.4313 -6.4585 -1.1056 18 1 9.2778 -6.9151 -0.1391 19 6 10.6126 -6.6823 -1.7993 20 7 10.7999 -6.1254 -2.9770 21 14 11.9366 -7.7740 -1.0612 22 1 11.7123 -9.1794 -1.4849 23 1 13.2704 -7.3219 -1.5322 24 1 11.8796 -7.6885 0.4202 25 6 6.5788 -4.0859 -1.3496 26 1 6.9509 -3.7385 -2.3134 27 6 6.8024 -3.0411 -0.2341 28 16 2.4739 -1.4057 0.0006 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.8430 2.0964 -0.0005 33 1 4.3550 1.6701 0.0110 34 1 4.4100 -3.9302 0.6826 35 1 3.5327 -2.9717 -0.5505 36 1 4.6234 -5.8419 0.1257 37 1 3.9977 -6.2186 -1.5099 38 1 6.2053 -6.7265 -2.3493 39 1 6.2853 -7.3871 -0.6826 40 1 8.5989 -5.2473 -2.5145 41 1 11.6253 -6.2821 -3.4620 42 1 7.6076 -2.3588 -0.5069 43 1 7.0266 -3.5349 0.7113 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026179169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:57 Heat of formation + Delta-G solvation = 12.621764 kcal Electronic energy + Delta-G solvation = -24439.211807 eV Core-core repulsion = 20997.021795 eV Total energy + Delta-G solvation = -3442.190012 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.33129 -38.81749 -37.63451 -35.20692 -33.36552 -32.34570 -31.02065 -29.76967 -28.47890 -27.31492 -25.12165 -24.27532 -23.29930 -22.85349 -21.04859 -20.00012 -19.19255 -18.51062 -18.03655 -17.07057 -16.25802 -16.08653 -15.63344 -15.22951 -14.74690 -14.48432 -14.34013 -14.02008 -13.84304 -13.36541 -13.24088 -13.06653 -12.78401 -12.62541 -12.43146 -12.31092 -12.12985 -11.89887 -11.67705 -11.24374 -11.15866 -10.80226 -10.78840 -10.57568 -10.41353 -10.24825 -10.21463 -9.97108 -9.93294 -9.66787 -8.97083 -8.88994 -8.79527 -8.64051 -6.96373 -5.77686 -3.06636 0.32609 1.24475 1.66159 2.20908 2.86592 3.15988 3.43235 3.48676 3.50338 4.33529 4.48248 4.49973 4.59836 4.81385 4.84424 4.86902 5.07733 5.11598 5.21454 5.32519 5.35426 5.38320 5.52100 5.54210 5.58001 5.69892 5.72646 5.81219 5.87627 5.91641 5.97670 6.02023 6.13378 6.16254 6.21432 6.28438 6.38315 6.52213 6.62519 6.77370 7.01434 7.50334 7.69365 8.08499 8.40634 9.51940 10.09087 10.43040 11.44790 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.002840 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.330308 B = 9857.755430 C =10558.163400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.219 4.219 3 C -0.159 4.159 4 C -0.052 4.052 5 C -0.263 4.263 6 C 0.607 3.393 7 O -0.532 6.532 8 N -0.623 5.623 9 C 0.103 3.897 10 C -0.099 4.099 11 H 0.087 0.913 12 C -0.117 4.117 13 C -0.142 4.142 14 C 0.184 3.816 15 H 0.058 0.942 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.107 4.107 26 H 0.091 0.909 27 C 0.117 3.883 28 S 0.216 5.784 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.085 0.915 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.613 9.575 5.791 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.338 4.338 3 C -0.189 4.189 4 C -0.085 4.085 5 C -0.383 4.383 6 C 0.396 3.604 7 O -0.410 6.410 8 N -0.356 5.356 9 C -0.021 4.021 10 C -0.119 4.119 11 H 0.106 0.894 12 C -0.155 4.155 13 C -0.183 4.183 14 C 0.073 3.927 15 H 0.076 0.924 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.127 4.127 26 H 0.109 0.891 27 C -0.005 4.005 28 S 0.484 5.516 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.169 0.831 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.304 8.483 6.003 25.517 hybrid contribution 0.981 1.149 -0.022 1.511 sum -22.324 9.633 5.981 25.038 Atomic orbital electron populations 1.20361 0.87747 1.02987 1.03144 1.24813 1.01910 0.99948 1.07087 1.19888 0.92573 0.99545 1.06907 1.20725 0.96209 0.95122 0.96444 1.24522 0.96571 0.98003 1.19240 1.16526 0.86806 0.80364 0.76688 1.90844 1.42266 1.57162 1.50756 1.49080 1.10006 1.04696 1.71812 1.23028 0.90674 0.88456 0.99982 1.22764 0.96224 0.95124 0.97774 0.89421 1.22455 0.98863 0.93629 1.00564 1.23280 0.93925 0.99376 1.01684 1.21126 0.86480 0.89374 0.95696 0.92379 1.42446 1.14047 1.57941 1.21568 1.19227 0.95069 1.21300 1.01536 0.91166 1.24742 0.98293 1.00910 0.96918 1.69659 1.26653 1.47911 1.13773 0.86211 0.81591 0.80215 0.78287 1.21757 1.21804 1.20759 1.23140 0.93866 0.96734 0.98970 0.89095 1.22666 0.85138 0.93592 0.99068 1.83318 0.93762 1.06150 1.68326 0.91376 0.90437 0.90457 0.84252 0.83076 0.89719 0.91186 0.91654 0.92010 0.91497 0.92070 0.78149 0.93486 0.89643 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.33 36.00 0.37 -0.10 16 2 C -0.22 -1.89 6.28 -35.86 -0.23 -2.11 16 3 C -0.16 -1.48 10.00 -41.41 -0.41 -1.89 16 4 C -0.05 -0.60 10.02 -40.44 -0.41 -1.00 16 5 C -0.26 -3.37 6.39 -36.80 -0.24 -3.61 16 6 C 0.61 9.63 7.88 -12.90 -0.10 9.53 16 7 O -0.53 -10.30 17.15 5.19 0.09 -10.21 16 8 N -0.62 -8.98 3.31 -170.47 -0.56 -9.55 16 9 C 0.10 1.16 5.95 -2.26 -0.01 1.15 16 10 C -0.10 -1.22 3.97 -88.04 -0.35 -1.57 16 11 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 12 C -0.12 -1.38 6.37 -25.00 -0.16 -1.54 16 13 C -0.14 -2.27 6.58 -24.63 -0.16 -2.43 16 14 C 0.18 3.38 3.06 -66.36 -0.20 3.18 16 15 H 0.06 1.09 7.12 -51.93 -0.37 0.72 16 16 N -0.72 -17.29 5.20 -51.91 -0.27 -17.56 16 17 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C -0.11 -1.68 3.64 -88.04 -0.32 -2.00 16 26 H 0.09 1.57 7.83 -51.93 -0.41 1.16 16 27 C 0.12 1.84 6.57 -2.26 -0.01 1.83 16 28 S 0.22 2.04 18.65 -107.50 -2.00 0.03 16 29 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.08 0.85 7.20 -51.93 -0.37 0.48 16 35 H 0.07 0.69 3.93 -23.35 -0.09 0.60 16 36 H 0.06 0.69 7.18 -51.93 -0.37 0.32 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.38 9.92 7.63 -40.82 -0.31 9.61 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.09 1.52 7.90 -51.93 -0.41 1.11 16 43 H 0.08 1.20 7.20 -51.93 -0.37 0.83 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -32.06 355.94 -10.22 -42.28 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.06 Total: 7.25 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.48 Total: -7.65 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.11 Total: -54.26 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.00 Total: 0.03 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.06 -10.22 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026179169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.903 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds