Wall clock time and date at job start Tue Mar 31 2020 12:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32771 * 124.71597 * 2 1 4 4 C 1.44425 * 113.08653 * 180.02562 * 3 2 1 5 5 C 1.47188 * 123.46533 * 179.97438 * 4 3 2 6 6 O 1.21635 * 120.00264 * 170.89372 * 5 4 3 7 7 N 1.34775 * 119.99681 * 350.90405 * 5 4 3 8 8 C 1.47211 * 126.70261 * 173.21096 * 7 5 4 9 9 C 1.53783 * 106.38072 * 148.73945 * 8 7 5 10 10 H 1.08999 * 112.38065 * 256.84299 * 9 8 7 11 11 C 1.54328 * 109.06400 * 132.42670 * 9 8 7 12 12 C 1.55058 * 103.93117 * 222.02753 * 11 9 8 13 13 C 1.55056 * 102.10928 * 40.06044 * 12 11 9 14 14 H 1.08996 * 110.53636 * 78.55877 * 13 12 11 15 15 N 1.46504 * 110.65081 * 201.27033 * 13 12 11 16 16 C 1.36940 * 119.99650 * 271.54781 * 15 13 12 17 17 H 1.08000 * 120.00180 * 0.02562 * 16 15 13 18 18 C 1.38819 * 119.99493 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00344 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99685 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47120 * 89.99891 * 20 18 16 22 22 H 1.48495 * 109.46802 * 210.00272 * 20 18 16 23 23 H 1.48506 * 109.47102 * 330.00470 * 20 18 16 24 24 C 1.54326 * 103.93635 * 319.93737 * 13 12 11 25 25 H 1.08999 * 111.69103 * 262.80053 * 24 13 12 26 26 C 1.47220 * 126.70372 * 353.23075 * 7 5 4 27 27 C 1.36008 * 113.07802 * 0.24965 * 4 3 2 28 28 S 1.70456 * 110.81539 * 359.62403 * 27 4 3 29 29 H 1.08999 * 109.47111 * 89.99532 * 1 2 3 30 30 H 1.09004 * 109.47586 * 210.00087 * 1 2 3 31 31 H 1.09004 * 109.46915 * 330.00048 * 1 2 3 32 32 H 1.08000 * 123.45454 * 0.02562 * 3 2 1 33 33 H 1.09002 * 110.07419 * 29.50973 * 8 7 5 34 34 H 1.09000 * 110.07540 * 267.96294 * 8 7 5 35 35 H 1.09002 * 110.53315 * 340.64069 * 11 9 8 36 36 H 1.09003 * 110.53596 * 103.41655 * 11 9 8 37 37 H 1.09002 * 110.90398 * 281.85330 * 12 11 9 38 38 H 1.09003 * 110.89652 * 158.26054 * 12 11 9 39 39 H 0.96995 * 119.99896 * 91.55101 * 15 13 12 40 40 H 0.96992 * 120.00103 * 179.97438 * 19 18 16 41 41 H 1.08992 * 110.06961 * 92.03342 * 26 7 5 42 42 H 1.08998 * 110.07232 * 330.49440 * 26 7 5 43 43 H 1.08001 * 124.59645 * 179.73190 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8002 -0.0006 5 6 4.7202 1.8393 -0.0013 6 8 5.8853 1.5320 0.1650 7 7 4.3837 3.1312 -0.1859 8 6 5.2759 4.2970 -0.0766 9 6 4.7478 5.3423 -1.0733 10 1 5.3501 5.3922 -1.9804 11 6 4.6631 6.7128 -0.3688 12 6 3.3133 7.3002 -0.8560 13 6 2.3909 6.0539 -0.8382 14 1 2.0639 5.8348 0.1782 15 7 1.2354 6.2537 -1.7164 16 6 0.0979 6.8395 -1.2286 17 1 0.0526 7.1547 -0.1966 18 6 -0.9972 7.0283 -2.0607 19 7 -0.9422 6.6438 -3.3182 20 14 -2.5487 7.8282 -1.3954 21 1 -2.4667 9.2991 -1.5825 22 1 -3.7294 7.3013 -2.1259 23 1 -2.6834 7.5200 0.0511 24 6 3.2888 4.9192 -1.3747 25 1 3.1290 4.7482 -2.4392 26 6 3.0520 3.6523 -0.5358 27 6 3.9476 -0.5328 -0.0065 28 16 2.5063 -1.4427 -0.0009 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.8615 2.0939 0.0004 33 1 6.2957 4.0135 -0.3370 34 1 5.2456 4.6976 0.9367 35 1 4.6566 6.5864 0.7139 36 1 5.4911 7.3521 -0.6752 37 1 3.4054 7.7015 -1.8653 38 1 2.9499 8.0629 -0.1673 39 1 1.2762 5.9710 -2.6433 40 1 -1.7075 6.7754 -3.8995 41 1 2.4980 3.9009 0.3692 42 1 2.5031 2.9139 -1.1202 43 1 4.9407 -0.9573 -0.0121 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026376248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:14 Heat of formation + Delta-G solvation = -2.725558 kcal Electronic energy + Delta-G solvation = -24888.244258 eV Core-core repulsion = 21445.388735 eV Total energy + Delta-G solvation = -3442.855522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70788 -39.91230 -38.10274 -36.66969 -35.06553 -33.02142 -32.74713 -30.74510 -30.14462 -27.73912 -26.84498 -26.08499 -24.62625 -23.87381 -21.61639 -21.00628 -20.40938 -20.13763 -19.05590 -18.67687 -17.43978 -16.96858 -16.79441 -16.56729 -15.96047 -15.66800 -15.43018 -14.97435 -14.88955 -14.68257 -14.50269 -14.18088 -13.89502 -13.58748 -13.36914 -13.20865 -13.13218 -12.94193 -12.88338 -12.85952 -12.58795 -12.33767 -12.12003 -11.99363 -11.78360 -11.65183 -11.51712 -11.39960 -11.38001 -11.09618 -10.81459 -9.92722 -9.71075 -9.36889 -8.92284 -7.89125 -5.16303 -0.25923 0.52803 0.85467 0.90260 1.51013 1.51833 1.59661 1.97816 2.21192 2.60347 3.31823 3.39956 3.56419 3.63347 3.72969 3.84813 4.07536 4.15569 4.23622 4.33944 4.37851 4.42738 4.47479 4.52693 4.61952 4.64888 4.69949 4.75437 4.81516 4.85630 4.90964 5.00485 5.05453 5.07856 5.17437 5.19932 5.28456 5.34995 5.40822 5.46230 5.55043 5.63918 6.33156 6.40001 6.99785 7.39929 8.16427 8.38884 9.34303 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011186 B = 0.004178 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.569293 B = 6700.633072 C = 8868.073411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.201 4.201 3 C -0.147 4.147 4 C -0.178 4.178 5 C 0.591 3.409 6 O -0.583 6.583 7 N -0.609 5.609 8 C 0.111 3.889 9 C -0.091 4.091 10 H 0.094 0.906 11 C -0.103 4.103 12 C -0.140 4.140 13 C 0.179 3.821 14 H 0.057 0.943 15 N -0.731 5.731 16 C -0.233 4.233 17 H 0.076 0.924 18 C -0.071 4.071 19 N -0.969 5.969 20 Si 0.964 3.036 21 H -0.292 1.292 22 H -0.299 1.299 23 H -0.269 1.269 24 C -0.102 4.102 25 H 0.077 0.923 26 C 0.107 3.893 27 C -0.196 4.196 28 S 0.243 5.757 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.372 0.628 40 H 0.249 0.751 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.303 -13.111 8.075 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.318 4.318 3 C -0.175 4.175 4 C -0.195 4.195 5 C 0.381 3.619 6 O -0.466 6.466 7 N -0.340 5.340 8 C -0.011 4.011 9 C -0.110 4.110 10 H 0.112 0.888 11 C -0.141 4.141 12 C -0.180 4.180 13 C 0.070 3.930 14 H 0.075 0.925 15 N -0.370 5.370 16 C -0.365 4.365 17 H 0.094 0.906 18 C -0.264 4.264 19 N -0.620 5.620 20 Si 0.794 3.206 21 H -0.220 1.220 22 H -0.225 1.225 23 H -0.193 1.193 24 C -0.123 4.123 25 H 0.095 0.905 26 C -0.016 4.016 27 C -0.335 4.335 28 S 0.509 5.491 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.180 0.820 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.205 0.795 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.473 -14.845 8.329 19.014 hybrid contribution -0.470 2.168 -0.488 2.271 sum 8.003 -12.677 7.840 16.918 Atomic orbital electron populations 1.20478 0.85857 1.04368 1.03806 1.24798 1.01811 0.96294 1.08875 1.21899 0.90731 1.01236 1.03598 1.20112 0.93495 0.93225 1.12697 1.17582 0.87383 0.81170 0.75766 1.90730 1.20706 1.81856 1.53308 1.48435 1.12354 1.05116 1.68072 1.22306 0.94426 0.84387 0.99933 1.22536 0.94871 0.95041 0.98579 0.88776 1.22443 0.97152 0.94326 1.00170 1.23146 0.95867 0.98754 1.00236 1.21460 0.85920 0.92275 0.93361 0.92490 1.42612 1.11728 1.72189 1.10517 1.19589 0.91675 1.29825 0.95394 0.90637 1.25421 1.01269 1.03509 0.96166 1.69800 1.31320 1.54855 1.06026 0.85282 0.79741 0.77823 0.77794 1.21953 1.22542 1.19339 1.22779 0.95462 0.94442 0.99577 0.90453 1.22639 0.84037 0.95666 0.99231 1.25734 1.06147 0.97088 1.04501 1.82691 0.91364 1.06815 1.68209 0.89985 0.89279 0.90213 0.82029 0.90631 0.89817 0.90139 0.90015 0.93155 0.92619 0.79544 0.94229 0.90240 0.89497 0.80554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 10.34 71.23 0.74 -0.69 16 2 C -0.20 -4.16 6.44 24.51 0.16 -4.01 16 3 C -0.15 -3.66 8.48 22.67 0.19 -3.47 16 4 C -0.18 -4.87 5.92 -19.87 -0.12 -4.99 16 5 C 0.59 18.72 7.82 86.59 0.68 19.40 16 6 O -0.58 -21.55 16.96 -4.14 -0.07 -21.62 16 7 N -0.61 -17.31 3.32 -819.29 -2.72 -20.03 16 8 C 0.11 2.77 6.57 86.51 0.57 3.34 16 9 C -0.09 -2.23 3.91 -9.44 -0.04 -2.26 16 10 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 11 C -0.10 -2.37 6.35 31.75 0.20 -2.17 16 12 C -0.14 -4.40 6.60 32.00 0.21 -4.19 16 13 C 0.18 6.31 3.02 46.14 0.14 6.45 16 14 H 0.06 2.02 7.15 -2.39 -0.02 2.00 16 15 N -0.73 -34.08 5.23 -317.48 -1.66 -35.74 16 16 C -0.23 -12.13 9.97 84.03 0.84 -11.29 16 17 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 19 N -0.97 -57.17 13.06 21.65 0.28 -56.88 16 20 Si 0.96 44.40 29.55 68.60 2.03 46.43 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 C -0.10 -3.06 3.60 -9.44 -0.03 -3.09 16 25 H 0.08 2.55 7.80 -2.39 -0.02 2.53 16 26 C 0.11 2.97 4.70 86.50 0.41 3.38 16 27 C -0.20 -4.55 10.53 67.30 0.71 -3.84 16 28 S 0.24 4.22 23.00 -56.49 -1.30 2.93 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.16 4.09 4.49 -2.91 -0.01 4.08 16 33 H 0.08 1.93 7.86 -2.39 -0.02 1.91 16 34 H 0.08 1.87 7.13 -2.39 -0.02 1.86 16 35 H 0.08 1.66 7.19 -2.39 -0.02 1.64 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.37 18.94 7.59 -92.71 -0.70 18.24 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.08 2.17 6.78 -2.39 -0.02 2.16 16 42 H 0.09 2.47 5.48 -2.39 -0.01 2.46 16 43 H 0.18 3.86 8.04 -2.91 -0.02 3.83 16 Total: -1.00 -65.66 354.82 2.01 -63.65 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.33 Total: 32.16 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.12 Total: -10.89 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -4.10 Total: -112.65 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.07 Total: -21.62 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.30 Total: 2.93 kcal Total: -65.66 2.01 -63.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026376248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.925 kcal (2) G-P(sol) polarization free energy of solvation -65.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds