Wall clock time and date at job start Tue Mar 31 2020 12:05:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.32772 * 124.71121 * 2 1
4 4 C 1.44429 * 113.08290 * 180.26072 * 3 2 1
5 5 C 1.47193 * 123.45638 * 179.97438 * 4 3 2
6 6 O 1.21642 * 119.99731 * 186.02936 * 5 4 3
7 7 N 1.34772 * 120.00392 * 6.02913 * 5 4 3
8 8 C 1.49217 * 126.05664 * 4.76449 * 7 5 4
9 9 C 1.50354 * 104.86179 * 172.93753 * 8 7 5
10 10 H 1.09003 * 110.05670 * 278.93830 * 9 8 7
11 11 C 1.51008 * 125.54124 * 144.30264 * 9 8 7
12 12 C 1.56401 * 101.59404 * 204.00282 * 11 9 8
13 13 C 1.55944 * 105.79074 * 25.01623 * 12 11 9
14 14 H 1.09000 * 110.60690 * 248.81845 * 13 12 11
15 15 N 1.46502 * 110.49617 * 126.20782 * 13 12 11
16 16 C 1.36939 * 119.99578 * 90.26509 * 15 13 12
17 17 H 1.08000 * 120.00339 * 0.02562 * 16 15 13
18 18 C 1.38815 * 119.99709 * 180.02562 * 16 15 13
19 19 N 1.31621 * 120.00106 * 0.02562 * 18 16 15
20 20 Si 1.86799 * 120.00019 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.46947 * 60.00143 * 20 18 16
22 22 H 1.48490 * 109.47171 * 180.02562 * 20 18 16
23 23 H 1.48506 * 109.47174 * 300.00306 * 20 18 16
24 24 C 1.50293 * 104.15354 * 7.54385 * 13 12 11
25 25 H 1.08989 * 109.99429 * 80.48080 * 24 13 12
26 26 C 1.49700 * 126.06073 * 184.45512 * 7 5 4
27 27 C 1.36009 * 113.07889 * 0.02562 * 4 3 2
28 28 S 1.70440 * 110.81529 * 359.97438 * 27 4 3
29 29 H 1.08997 * 109.47028 * 179.72367 * 1 2 3
30 30 H 1.08993 * 109.47029 * 299.72711 * 1 2 3
31 31 H 1.08998 * 109.46850 * 59.72821 * 1 2 3
32 32 H 1.08002 * 123.45932 * 0.24435 * 3 2 1
33 33 H 1.08999 * 110.36467 * 291.78249 * 8 7 5
34 34 H 1.09002 * 110.36253 * 54.09651 * 8 7 5
35 35 H 1.08996 * 110.99614 * 322.07862 * 11 9 8
36 36 H 1.08996 * 111.00186 * 85.92459 * 11 9 8
37 37 H 1.08994 * 110.19041 * 265.93729 * 12 11 9
38 38 H 1.09000 * 110.18783 * 144.09330 * 12 11 9
39 39 H 0.96998 * 119.99968 * 270.26984 * 15 13 12
40 40 H 0.97002 * 120.00111 * 180.02562 * 19 18 16
41 41 H 1.08999 * 110.84590 * 273.05452 * 26 7 5
42 42 H 1.09001 * 110.83992 * 36.67087 * 26 7 5
43 43 H 1.07997 * 124.58918 * 180.02562 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2631 1.0914 0.0000
4 6 3.6777 0.8003 -0.0060
5 6 4.7200 1.8396 -0.0078
6 8 5.8900 1.5273 -0.1236
7 7 4.3783 3.1371 0.1189
8 6 3.0043 3.6631 0.3680
9 6 3.1918 5.1366 0.6009
10 1 3.5093 5.3152 1.6283
11 6 2.2368 6.2226 0.1662
12 6 3.1864 7.4628 0.0867
13 6 4.6154 6.8883 -0.1572
14 1 5.2452 7.0413 0.7192
15 7 5.2226 7.5074 -1.3380
16 6 5.9706 8.6468 -1.2054
17 1 6.1132 9.0887 -0.2303
18 6 6.5455 9.2337 -2.3243
19 7 6.3713 8.6954 -3.5127
20 14 7.5663 10.7876 -2.1434
21 1 8.7191 10.5208 -1.2460
22 1 8.0641 11.2108 -3.4769
23 1 6.7269 11.8667 -1.5635
24 6 4.3867 5.4214 -0.3911
25 1 4.0642 5.2537 -1.4186
26 6 5.3108 4.3056 0.0411
27 6 3.9477 -0.5327 -0.0111
28 16 2.5065 -1.4426 -0.0079
29 1 -0.3633 -1.0276 -0.0050
30 1 -0.3633 0.5096 0.8924
31 1 -0.3633 0.5180 -0.8875
32 1 1.8615 2.0940 0.0038
33 1 2.3700 3.4945 -0.5023
34 1 2.5719 3.1917 1.2505
35 1 1.8066 5.9968 -0.8094
36 1 1.4551 6.3761 0.9101
37 1 3.1593 8.0181 1.0242
38 1 2.8940 8.1079 -0.7419
39 1 5.0948 7.1102 -2.2137
40 1 6.7733 9.1053 -4.2945
41 1 5.7493 4.5175 1.0163
42 1 6.0864 4.1338 -0.7052
43 1 4.9408 -0.9571 -0.0156
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001026376249.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:05:17
Heat of formation + Delta-G solvation = 33.016796 kcal
Electronic energy + Delta-G solvation = -24551.668671 eV
Core-core repulsion = 21110.363053 eV
Total energy + Delta-G solvation = -3441.305617 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.68661 -38.93433 -37.13924 -35.35099 -33.39490 -32.28136 -30.94888 -29.74214
-28.60802 -26.96191 -25.75458 -24.59889 -23.21117 -22.55540 -20.53976 -19.94000
-19.37044 -18.83356 -17.71317 -17.09805 -16.58542 -15.78778 -15.49907 -14.94525
-14.86334 -14.32711 -14.24113 -13.95711 -13.77855 -13.63038 -13.39503 -12.89256
-12.84711 -12.63387 -12.34757 -12.23300 -12.05776 -11.80199 -11.57327 -11.46830
-11.21512 -10.87892 -10.78161 -10.76413 -10.44349 -10.17825 -10.13947 -9.90202
-9.76070 -9.56334 -9.05280 -8.91481 -8.74312 -8.52556 -6.97952 -5.77456
-3.06769 0.60397 1.26598 1.63750 1.80627 2.95878 3.33256 3.43912
3.48624 3.49458 4.11213 4.36315 4.57789 4.67241 4.84555 4.85722
4.97753 5.09975 5.18611 5.18993 5.26193 5.32662 5.39309 5.51950
5.56337 5.56943 5.67981 5.72255 5.78569 5.85690 5.91973 5.99691
6.03356 6.06839 6.13027 6.23598 6.32878 6.35288 6.49431 6.62597
6.77267 7.04286 7.53612 7.69408 8.19472 8.40684 9.51945 10.08581
10.42942 11.44885
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.023478 B = 0.002787 C = 0.002614
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1192.319671 B =10043.957250 C =10707.253121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C -0.200 4.200
3 C -0.135 4.135
4 C -0.149 4.149
5 C 0.591 3.409
6 O -0.542 6.542
7 N -0.617 5.617
8 C 0.118 3.882
9 C -0.133 4.133
10 H 0.082 0.918
11 C -0.097 4.097
12 C -0.144 4.144
13 C 0.196 3.804
14 H 0.057 0.943
15 N -0.720 5.720
16 C -0.242 4.242
17 H 0.070 0.930
18 C -0.012 4.012
19 N -0.932 5.932
20 Si 0.906 3.094
21 H -0.286 1.286
22 H -0.291 1.291
23 H -0.286 1.286
24 C -0.117 4.117
25 H 0.082 0.918
26 C 0.130 3.870
27 C -0.185 4.185
28 S 0.174 5.826
29 H 0.067 0.933
30 H 0.077 0.923
31 H 0.078 0.922
32 H 0.167 0.833
33 H 0.075 0.925
34 H 0.075 0.925
35 H 0.065 0.935
36 H 0.060 0.940
37 H 0.055 0.945
38 H 0.074 0.926
39 H 0.384 0.616
40 H 0.256 0.744
41 H 0.072 0.928
42 H 0.084 0.916
43 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.920 -18.443 9.598 25.590
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.317 4.317
3 C -0.163 4.163
4 C -0.166 4.166
5 C 0.379 3.621
6 O -0.421 6.421
7 N -0.351 5.351
8 C -0.004 4.004
9 C -0.152 4.152
10 H 0.101 0.899
11 C -0.135 4.135
12 C -0.185 4.185
13 C 0.085 3.915
14 H 0.075 0.925
15 N -0.360 5.360
16 C -0.373 4.373
17 H 0.088 0.912
18 C -0.208 4.208
19 N -0.580 5.580
20 Si 0.737 3.263
21 H -0.212 1.212
22 H -0.217 1.217
23 H -0.213 1.213
24 C -0.137 4.137
25 H 0.100 0.900
26 C 0.010 3.990
27 C -0.323 4.323
28 S 0.440 5.560
29 H 0.086 0.914
30 H 0.096 0.904
31 H 0.096 0.904
32 H 0.184 0.816
33 H 0.092 0.908
34 H 0.093 0.907
35 H 0.084 0.916
36 H 0.079 0.921
37 H 0.074 0.926
38 H 0.093 0.907
39 H 0.218 0.782
40 H 0.066 0.934
41 H 0.090 0.910
42 H 0.102 0.898
43 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges -14.447 -20.087 9.548 26.521
hybrid contribution 0.974 2.274 -0.279 2.489
sum -13.474 -17.813 9.269 24.182
Atomic orbital electron populations
1.20339 0.87446 1.02939 1.03287 1.24422 1.00451 0.96028 1.10803
1.21997 0.91203 1.00775 1.02293 1.20207 0.93439 0.93123 1.09875
1.17244 0.87504 0.80738 0.76606 1.90803 1.19081 1.81252 1.51010
1.49645 1.09498 1.05080 1.70906 1.21610 0.84084 0.94194 1.00525
1.22239 0.99388 0.92783 1.00806 0.89918 1.21748 0.96639 0.94529
1.00597 1.23810 0.96533 0.96508 1.01601 1.20094 0.92115 0.87382
0.91942 0.92531 1.42487 1.59718 1.29586 1.04190 1.19202 1.23432
1.01206 0.93443 0.91182 1.24746 1.01240 0.99423 0.95400 1.69649
1.49106 1.41466 0.97806 0.86283 0.80224 0.83215 0.76546 1.21244
1.21729 1.21281 1.22584 0.95391 0.96088 0.99668 0.89969 1.21593
0.92162 0.83469 1.01809 1.25508 1.04599 0.97089 1.05095 1.82978
0.93884 1.08861 1.70303 0.91428 0.90402 0.90362 0.81613 0.90753
0.90724 0.91597 0.92133 0.92642 0.90730 0.78153 0.93430 0.91003
0.89789 0.80818
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.46 10.35 36.01 0.37 -0.09 16
2 C -0.20 -1.72 6.44 -36.18 -0.23 -1.95 16
3 C -0.13 -1.37 8.78 -39.02 -0.34 -1.71 16
4 C -0.15 -1.92 5.95 -104.63 -0.62 -2.54 16
5 C 0.59 9.44 7.84 -12.63 -0.10 9.34 16
6 O -0.54 -10.58 17.10 5.24 0.09 -10.49 16
7 N -0.62 -8.96 3.42 -172.75 -0.59 -9.55 16
8 C 0.12 1.31 4.73 -3.85 -0.02 1.29 16
9 C -0.13 -1.61 2.76 -90.26 -0.25 -1.86 16
10 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
11 C -0.10 -1.18 6.72 -25.90 -0.17 -1.36 16
12 C -0.14 -2.30 6.74 -23.33 -0.16 -2.46 16
13 C 0.20 3.65 3.41 -67.71 -0.23 3.42 16
14 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16
15 N -0.72 -17.41 5.10 -53.20 -0.27 -17.68 16
16 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16
17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16
19 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16
20 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16
21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16
22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
24 C -0.12 -1.86 2.43 -90.20 -0.22 -2.07 16
25 H 0.08 1.42 7.92 -51.94 -0.41 1.01 16
26 C 0.13 2.09 6.81 -3.17 -0.02 2.07 16
27 C -0.18 -2.09 10.53 29.93 0.32 -1.78 16
28 S 0.17 1.46 22.99 -107.50 -2.47 -1.02 16
29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16
32 H 0.17 1.45 3.89 -52.49 -0.20 1.25 16
33 H 0.07 0.75 6.63 -51.93 -0.34 0.41 16
34 H 0.07 0.70 7.13 -51.93 -0.37 0.33 16
35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
38 H 0.07 1.37 7.98 -51.93 -0.41 0.96 16
39 H 0.38 10.01 7.67 -40.82 -0.31 9.69 16
40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16
42 H 0.08 1.53 8.13 -51.93 -0.42 1.10 16
43 H 0.17 1.92 8.03 -52.49 -0.42 1.50 16
LS Contribution 358.24 15.07 5.40 5.40
Total: -1.00 -32.22 358.24 -10.32 -42.54
By element:
Atomic # 1 Polarization: 13.90 SS G_CDS: -6.25 Total: 7.65 kcal
Atomic # 6 Polarization: -4.91 SS G_CDS: -1.93 Total: -6.84 kcal
Atomic # 7 Polarization: -54.34 SS G_CDS: -0.14 Total: -54.48 kcal
Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal
Atomic # 16 Polarization: 1.46 SS G_CDS: -2.47 Total: -1.02 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -32.22 -10.32 -42.54 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026376249.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.561 kcal
(2) G-P(sol) polarization free energy of solvation -32.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.338 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds