Wall clock time and date at job start Tue Mar 31 2020 12:05:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.32772 * 124.71121 * 2 1
4 4 C 1.44429 * 113.08290 * 180.26072 * 3 2 1
5 5 C 1.47193 * 123.45638 * 179.97438 * 4 3 2
6 6 O 1.21642 * 119.99731 * 186.02936 * 5 4 3
7 7 N 1.34772 * 120.00392 * 6.02913 * 5 4 3
8 8 C 1.49217 * 126.05664 * 4.76449 * 7 5 4
9 9 C 1.50354 * 104.86179 * 172.93753 * 8 7 5
10 10 H 1.09003 * 110.05670 * 278.93830 * 9 8 7
11 11 C 1.51008 * 125.54124 * 144.30264 * 9 8 7
12 12 C 1.56401 * 101.59404 * 204.00282 * 11 9 8
13 13 C 1.55944 * 105.79074 * 25.01623 * 12 11 9
14 14 H 1.09000 * 110.60690 * 248.81845 * 13 12 11
15 15 N 1.46502 * 110.49617 * 126.20782 * 13 12 11
16 16 C 1.36939 * 119.99578 * 90.26509 * 15 13 12
17 17 H 1.08000 * 120.00339 * 0.02562 * 16 15 13
18 18 C 1.38815 * 119.99709 * 180.02562 * 16 15 13
19 19 N 1.31621 * 120.00106 * 0.02562 * 18 16 15
20 20 Si 1.86799 * 120.00019 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.46947 * 60.00143 * 20 18 16
22 22 H 1.48490 * 109.47171 * 180.02562 * 20 18 16
23 23 H 1.48506 * 109.47174 * 300.00306 * 20 18 16
24 24 C 1.50293 * 104.15354 * 7.54385 * 13 12 11
25 25 H 1.08989 * 109.99429 * 80.48080 * 24 13 12
26 26 C 1.49700 * 126.06073 * 184.45512 * 7 5 4
27 27 C 1.36009 * 113.07889 * 0.02562 * 4 3 2
28 28 S 1.70440 * 110.81529 * 359.97438 * 27 4 3
29 29 H 1.08997 * 109.47028 * 179.72367 * 1 2 3
30 30 H 1.08993 * 109.47029 * 299.72711 * 1 2 3
31 31 H 1.08998 * 109.46850 * 59.72821 * 1 2 3
32 32 H 1.08002 * 123.45932 * 0.24435 * 3 2 1
33 33 H 1.08999 * 110.36467 * 291.78249 * 8 7 5
34 34 H 1.09002 * 110.36253 * 54.09651 * 8 7 5
35 35 H 1.08996 * 110.99614 * 322.07862 * 11 9 8
36 36 H 1.08996 * 111.00186 * 85.92459 * 11 9 8
37 37 H 1.08994 * 110.19041 * 265.93729 * 12 11 9
38 38 H 1.09000 * 110.18783 * 144.09330 * 12 11 9
39 39 H 0.96998 * 119.99968 * 270.26984 * 15 13 12
40 40 H 0.97002 * 120.00111 * 180.02562 * 19 18 16
41 41 H 1.08999 * 110.84590 * 273.05452 * 26 7 5
42 42 H 1.09001 * 110.83992 * 36.67087 * 26 7 5
43 43 H 1.07997 * 124.58918 * 180.02562 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2631 1.0914 0.0000
4 6 3.6777 0.8003 -0.0060
5 6 4.7200 1.8396 -0.0078
6 8 5.8900 1.5273 -0.1236
7 7 4.3783 3.1371 0.1189
8 6 3.0043 3.6631 0.3680
9 6 3.1918 5.1366 0.6009
10 1 3.5093 5.3152 1.6283
11 6 2.2368 6.2226 0.1662
12 6 3.1864 7.4628 0.0867
13 6 4.6154 6.8883 -0.1572
14 1 5.2452 7.0413 0.7192
15 7 5.2226 7.5074 -1.3380
16 6 5.9706 8.6468 -1.2054
17 1 6.1132 9.0887 -0.2303
18 6 6.5455 9.2337 -2.3243
19 7 6.3713 8.6954 -3.5127
20 14 7.5663 10.7876 -2.1434
21 1 8.7191 10.5208 -1.2460
22 1 8.0641 11.2108 -3.4769
23 1 6.7269 11.8667 -1.5635
24 6 4.3867 5.4214 -0.3911
25 1 4.0642 5.2537 -1.4186
26 6 5.3108 4.3056 0.0411
27 6 3.9477 -0.5327 -0.0111
28 16 2.5065 -1.4426 -0.0079
29 1 -0.3633 -1.0276 -0.0050
30 1 -0.3633 0.5096 0.8924
31 1 -0.3633 0.5180 -0.8875
32 1 1.8615 2.0940 0.0038
33 1 2.3700 3.4945 -0.5023
34 1 2.5719 3.1917 1.2505
35 1 1.8066 5.9968 -0.8094
36 1 1.4551 6.3761 0.9101
37 1 3.1593 8.0181 1.0242
38 1 2.8940 8.1079 -0.7419
39 1 5.0948 7.1102 -2.2137
40 1 6.7733 9.1053 -4.2945
41 1 5.7493 4.5175 1.0163
42 1 6.0864 4.1338 -0.7052
43 1 4.9408 -0.9571 -0.0156
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001026376249.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:05:17
Heat of formation + Delta-G solvation = 13.096414 kcal
Electronic energy + Delta-G solvation = -24552.532483 eV
Core-core repulsion = 21110.363053 eV
Total energy + Delta-G solvation = -3442.169430 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.85978 -40.10433 -38.05419 -36.83561 -35.09338 -32.95405 -32.68747 -31.03367
-29.92390 -27.71059 -27.12416 -25.76359 -24.91190 -23.72467 -21.61823 -21.01853
-20.46199 -19.98570 -19.11906 -18.55400 -17.78231 -16.82240 -16.63348 -16.58998
-16.04865 -15.68003 -15.38177 -15.22997 -14.84412 -14.55925 -14.45633 -14.21119
-14.10146 -13.52429 -13.35989 -13.18972 -13.08450 -12.96444 -12.87412 -12.83259
-12.57993 -12.47694 -12.23244 -12.17051 -11.82507 -11.69675 -11.56293 -11.33095
-11.11594 -10.97543 -10.85553 -9.92152 -9.67756 -9.36514 -8.98620 -7.93373
-5.21405 -0.24089 0.55374 0.88722 0.95734 1.46684 1.49551 1.55371
1.83305 2.24239 2.56819 2.95437 3.40634 3.54767 3.69205 3.78075
3.93491 4.04046 4.14198 4.26132 4.28272 4.38058 4.44400 4.50108
4.54164 4.54881 4.64839 4.69386 4.76046 4.85580 4.86287 4.89824
4.97114 5.03905 5.12700 5.17926 5.21124 5.24732 5.37633 5.42441
5.48943 5.53400 5.64985 6.28793 6.39735 7.00045 7.34446 8.11633
8.33407 9.30053
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.023478 B = 0.002787 C = 0.002614
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1192.319671 B =10043.957250 C =10707.253121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C -0.195 4.195
3 C -0.146 4.146
4 C -0.173 4.173
5 C 0.582 3.418
6 O -0.595 6.595
7 N -0.616 5.616
8 C 0.118 3.882
9 C -0.108 4.108
10 H 0.093 0.907
11 C -0.082 4.082
12 C -0.137 4.137
13 C 0.186 3.814
14 H 0.050 0.950
15 N -0.735 5.735
16 C -0.237 4.237
17 H 0.077 0.923
18 C -0.078 4.078
19 N -0.972 5.972
20 Si 0.970 3.030
21 H -0.280 1.280
22 H -0.298 1.298
23 H -0.275 1.275
24 C -0.120 4.120
25 H 0.065 0.935
26 C 0.131 3.869
27 C -0.206 4.206
28 S 0.232 5.768
29 H 0.079 0.921
30 H 0.093 0.907
31 H 0.088 0.912
32 H 0.181 0.819
33 H 0.092 0.908
34 H 0.107 0.893
35 H 0.069 0.931
36 H 0.097 0.903
37 H 0.069 0.931
38 H 0.047 0.953
39 H 0.371 0.629
40 H 0.249 0.751
41 H 0.076 0.924
42 H 0.048 0.952
43 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.348 -19.352 11.641 29.097
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.312 4.312
3 C -0.173 4.173
4 C -0.190 4.190
5 C 0.372 3.628
6 O -0.478 6.478
7 N -0.349 5.349
8 C -0.002 4.002
9 C -0.127 4.127
10 H 0.112 0.888
11 C -0.120 4.120
12 C -0.178 4.178
13 C 0.077 3.923
14 H 0.069 0.931
15 N -0.374 5.374
16 C -0.369 4.369
17 H 0.095 0.905
18 C -0.270 4.270
19 N -0.623 5.623
20 Si 0.799 3.201
21 H -0.207 1.207
22 H -0.225 1.225
23 H -0.201 1.201
24 C -0.140 4.140
25 H 0.083 0.917
26 C 0.009 3.991
27 C -0.345 4.345
28 S 0.499 5.501
29 H 0.098 0.902
30 H 0.112 0.888
31 H 0.106 0.894
32 H 0.198 0.802
33 H 0.110 0.890
34 H 0.125 0.875
35 H 0.088 0.912
36 H 0.116 0.884
37 H 0.087 0.913
38 H 0.066 0.934
39 H 0.202 0.798
40 H 0.058 0.942
41 H 0.095 0.905
42 H 0.067 0.933
43 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges -17.943 -20.998 11.659 29.980
hybrid contribution 2.006 2.432 -0.854 3.266
sum -15.937 -18.567 10.805 26.748
Atomic orbital electron populations
1.20496 0.84937 1.04228 1.04498 1.24893 1.02059 0.95566 1.08653
1.22004 0.89644 1.02082 1.03619 1.20137 0.94029 0.92546 1.12336
1.17858 0.87674 0.81567 0.75687 1.90758 1.21377 1.82126 1.53587
1.49676 1.10633 1.04338 1.70228 1.21868 0.82388 0.93176 1.02743
1.22217 0.96966 0.93541 0.99984 0.88843 1.21671 0.96382 0.91863
1.02085 1.23598 0.95141 0.97967 1.01091 1.20389 0.93339 0.88955
0.89618 0.93149 1.42699 1.60154 1.29235 1.05286 1.19611 1.22255
1.01500 0.93490 0.90509 1.25540 1.03373 1.02805 0.95290 1.69815
1.50951 1.43141 0.98368 0.85258 0.78827 0.79947 0.76036 1.20681
1.22491 1.20123 1.22332 0.97464 0.94259 0.99962 0.91652 1.21431
0.92088 0.84640 1.00938 1.25698 1.06094 0.97549 1.05132 1.82786
0.91425 1.07695 1.68219 0.90163 0.88820 0.89384 0.80184 0.89017
0.87543 0.91240 0.88430 0.91254 0.93441 0.79760 0.94197 0.90533
0.93340 0.81734
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.56 10.35 71.24 0.74 0.18 16
2 C -0.19 -2.65 6.44 24.51 0.16 -2.49 16
3 C -0.15 -2.57 8.78 22.67 0.20 -2.37 16
4 C -0.17 -4.33 5.95 -19.87 -0.12 -4.45 16
5 C 0.58 19.10 7.84 86.60 0.68 19.78 16
6 O -0.60 -24.77 17.10 -4.16 -0.07 -24.84 16
7 N -0.62 -17.80 3.42 -818.69 -2.80 -20.61 16
8 C 0.12 2.29 4.73 85.00 0.40 2.69 16
9 C -0.11 -2.31 2.76 -10.56 -0.03 -2.34 16
10 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16
11 C -0.08 -1.71 6.72 31.13 0.21 -1.50 16
12 C -0.14 -4.20 6.74 32.80 0.22 -3.97 16
13 C 0.19 6.97 3.41 45.14 0.15 7.12 16
14 H 0.05 1.93 8.09 -2.39 -0.02 1.91 16
15 N -0.73 -36.74 5.10 -322.24 -1.64 -38.38 16
16 C -0.24 -13.09 9.96 84.03 0.84 -12.25 16
17 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16
18 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16
19 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16
20 Si 0.97 46.64 29.55 68.60 2.03 48.67 16
21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
22 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16
23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
24 C -0.12 -3.82 2.43 -10.52 -0.03 -3.84 16
25 H 0.07 2.32 7.92 -2.39 -0.02 2.30 16
26 C 0.13 4.36 6.81 85.16 0.58 4.94 16
27 C -0.21 -4.59 10.53 67.30 0.71 -3.88 16
28 S 0.23 3.30 22.99 -56.49 -1.30 2.00 16
29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16
30 H 0.09 0.40 8.14 -2.39 -0.02 0.39 16
31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16
32 H 0.18 2.45 3.89 -2.91 -0.01 2.44 16
33 H 0.09 1.52 6.63 -2.39 -0.02 1.51 16
34 H 0.11 1.50 7.13 -2.39 -0.02 1.48 16
35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16
37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
38 H 0.05 1.72 7.98 -2.39 -0.02 1.70 16
39 H 0.37 20.28 7.67 -92.71 -0.71 19.57 16
40 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16
41 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16
42 H 0.05 1.93 8.13 -2.39 -0.02 1.91 16
43 H 0.17 3.82 8.03 -2.91 -0.02 3.80 16
Total: -1.00 -74.64 358.24 1.99 -72.65
By element:
Atomic # 1 Polarization: 26.79 SS G_CDS: 0.32 Total: 27.11 kcal
Atomic # 6 Polarization: -11.64 SS G_CDS: 5.18 Total: -6.46 kcal
Atomic # 7 Polarization: -114.97 SS G_CDS: -4.16 Total: -119.14 kcal
Atomic # 8 Polarization: -24.77 SS G_CDS: -0.07 Total: -24.84 kcal
Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal
Atomic # 16 Polarization: 3.30 SS G_CDS: -1.30 Total: 2.00 kcal
Total: -74.64 1.99 -72.65 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026376249.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.745 kcal
(2) G-P(sol) polarization free energy of solvation -74.637 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.648 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds