Wall clock time and date at job start Tue Mar 31 2020 12:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38424 * 122.54029 * 2 1 4 4 C 1.33387 * 114.92317 * 180.26970 * 3 2 1 5 5 S 1.75886 * 109.59281 * 359.76596 * 4 3 2 6 6 C 1.33380 * 122.53971 * 179.82155 * 2 1 3 7 7 C 1.50706 * 125.20446 * 0.02562 * 6 2 1 8 8 H 1.09006 * 115.54488 * 334.13390 * 7 6 2 9 9 C 1.52996 * 117.50082 * 188.46610 * 7 6 2 10 10 C 1.52994 * 117.50161 * 119.80249 * 7 6 2 11 11 H 1.09004 * 117.50009 * 359.97438 * 10 7 6 12 12 C 1.50696 * 117.50292 * 214.98338 * 10 7 6 13 13 O 1.21282 * 119.99915 * 359.97438 * 12 10 7 14 14 N 1.34775 * 120.00641 * 180.02562 * 12 10 7 15 15 C 1.46494 * 120.00333 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.47049 * 179.97438 * 15 14 12 17 17 C 1.53939 * 113.74395 * 273.73963 * 16 15 14 18 18 N 1.47810 * 86.03827 * 222.08420 * 17 16 15 19 19 C 1.36936 * 134.45868 * 204.64329 * 18 17 16 20 20 H 1.08003 * 120.00097 * 179.87129 * 19 18 17 21 21 C 1.38807 * 120.00069 * 359.86541 * 19 18 17 22 22 N 1.31628 * 119.99698 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00444 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46940 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47358 * 120.00165 * 23 21 19 26 26 H 1.48501 * 109.47266 * 240.00464 * 23 21 19 27 27 C 1.47580 * 91.05094 * 24.54940 * 18 17 16 28 28 H 1.08995 * 109.47733 * 270.17616 * 1 2 3 29 29 H 1.09007 * 109.47025 * 30.17898 * 1 2 3 30 30 H 1.09001 * 109.47103 * 150.17156 * 1 2 3 31 31 H 1.08004 * 122.54250 * 0.03274 * 3 2 1 32 32 H 1.07997 * 125.20749 * 179.75076 * 4 3 2 33 33 H 1.09002 * 117.49661 * 359.97438 * 9 7 6 34 34 H 1.08996 * 117.50170 * 144.99429 * 9 7 6 35 35 H 0.97002 * 119.99610 * 359.97438 * 14 12 10 36 36 H 1.09001 * 109.46763 * 299.99777 * 15 14 12 37 37 H 1.09001 * 109.47624 * 59.99546 * 15 14 12 38 38 H 1.08999 * 112.94088 * 45.33429 * 16 15 14 39 39 H 1.09008 * 113.76692 * 336.34724 * 17 16 15 40 40 H 1.08991 * 113.76988 * 107.74592 * 17 16 15 41 41 H 0.96996 * 119.99615 * 179.97438 * 22 21 19 42 42 H 1.09004 * 113.76893 * 221.15131 * 27 18 17 43 43 H 1.09006 * 113.87444 * 89.76802 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9901 -0.0057 5 16 3.9386 -0.7304 -0.0047 6 6 2.2244 -1.1244 0.0035 7 6 1.6536 -2.5192 0.0073 8 1 0.6564 -2.6178 0.4363 9 6 2.6283 -3.6808 0.2108 10 6 2.0107 -3.4319 -1.1675 11 1 2.6582 -3.0234 -1.9435 12 6 0.9571 -4.3988 -1.6428 13 8 -0.1254 -4.4327 -1.0970 14 7 1.2180 -5.2267 -2.6738 15 6 0.1936 -6.1663 -3.1362 16 6 0.7417 -6.9819 -4.3089 17 6 0.5613 -6.2992 -5.6768 18 7 0.1794 -7.6359 -6.1788 19 6 0.2013 -8.2415 -7.4067 20 1 -0.1413 -9.2603 -7.5126 21 6 0.6636 -7.5460 -8.5155 22 7 1.0805 -6.3042 -8.3865 23 14 0.6927 -8.3718 -10.1908 24 1 0.1740 -9.7579 -10.0685 25 1 -0.1601 -7.6062 -11.1350 26 1 2.0870 -8.4078 -10.7008 27 6 -0.2323 -8.0565 -4.8254 28 1 -0.3634 0.0032 1.0276 29 1 -0.3633 0.8884 -0.5166 30 1 -0.3633 -0.8915 -0.5112 31 1 1.7965 2.1464 0.0005 32 1 4.3077 1.7822 -0.0104 33 1 3.6824 -3.4363 0.3415 34 1 2.2724 -4.5437 0.7736 35 1 2.0839 -5.1999 -3.1102 36 1 -0.0778 -6.8377 -2.3215 37 1 -0.6879 -5.6126 -3.4596 38 1 1.7514 -7.3529 -4.1333 39 1 -0.2507 -5.5723 -5.7013 40 1 1.4889 -5.9171 -6.1028 41 1 1.4039 -5.8184 -9.1612 42 1 0.0630 -9.0749 -4.5730 43 1 -1.2777 -7.8479 -4.5975 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031666408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:52 Heat of formation + Delta-G solvation = 69.331491 kcal Electronic energy + Delta-G solvation = -23377.171779 eV Core-core repulsion = 19937.440885 eV Total energy + Delta-G solvation = -3439.730894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11022 -38.73286 -38.02217 -36.43577 -34.36760 -32.18008 -31.10835 -29.08230 -27.91966 -26.20844 -24.81422 -23.92294 -23.60693 -21.94312 -21.66447 -20.23510 -19.05986 -18.78269 -17.46376 -17.07157 -16.67074 -15.88935 -15.55373 -15.25212 -14.81334 -14.59258 -14.21421 -14.11453 -13.78643 -13.50065 -13.25757 -12.98228 -12.69627 -12.49640 -12.35519 -12.29021 -12.13088 -11.78771 -11.44059 -11.35053 -11.14601 -11.01583 -10.89168 -10.73680 -10.70696 -10.56797 -10.02834 -9.76858 -9.71121 -9.44210 -8.84344 -8.80947 -8.72715 -8.53163 -6.89017 -5.78138 -3.10298 0.69593 1.36327 1.74175 2.35451 2.58718 3.23838 3.37986 3.43376 3.45882 3.69538 4.28133 4.44199 4.46368 4.60482 4.69383 4.91405 4.99627 5.15692 5.16471 5.24847 5.30182 5.31457 5.35286 5.41931 5.47613 5.63225 5.68818 5.72198 5.80579 5.82754 5.87959 6.02955 6.22330 6.23166 6.29560 6.35076 6.54802 6.63047 6.74232 7.20660 7.34087 7.53971 7.64843 7.96863 8.31856 9.03599 9.69720 10.58625 11.39097 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.002246 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.264701 B =12464.211138 C =13062.602627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.100 4.100 3 C -0.128 4.128 4 C -0.216 4.216 5 S 0.095 5.905 6 C -0.149 4.149 7 C -0.052 4.052 8 H 0.137 0.863 9 C -0.144 4.144 10 C -0.175 4.175 11 H 0.127 0.873 12 C 0.541 3.459 13 O -0.546 6.546 14 N -0.715 5.715 15 C 0.130 3.870 16 C -0.153 4.153 17 C 0.169 3.831 18 N -0.613 5.613 19 C -0.222 4.222 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.128 3.872 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.164 0.836 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.403 0.597 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 13.033 20.579 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.158 4.158 4 C -0.351 4.351 5 S 0.361 5.639 6 C -0.266 4.266 7 C -0.072 4.072 8 H 0.154 0.846 9 C -0.182 4.182 10 C -0.197 4.197 11 H 0.145 0.855 12 C 0.327 3.673 13 O -0.424 6.424 14 N -0.365 5.365 15 C 0.006 3.994 16 C -0.173 4.173 17 C 0.043 3.957 18 N -0.339 5.339 19 C -0.349 4.349 20 H 0.098 0.902 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.002 3.998 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.157 0.843 32 H 0.181 0.819 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.238 0.762 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.403 12.125 20.580 24.729 hybrid contribution -0.803 0.654 -1.377 1.723 sum 5.600 12.779 19.203 23.737 Atomic orbital electron populations 1.20557 0.89529 1.03240 1.02340 1.18841 0.97696 0.91357 1.03278 1.20058 0.92843 0.99267 1.03656 1.25570 0.99773 0.98983 1.10759 1.84176 1.05560 1.00641 1.73543 1.23540 0.95421 0.96924 1.10708 1.20430 1.00562 0.85344 1.00864 0.84581 1.23130 0.98725 1.00037 0.96268 1.22452 1.01971 1.01593 0.93654 0.85530 1.19475 0.87449 0.80482 0.79909 1.90683 1.24760 1.69877 1.57124 1.45974 1.18413 1.38269 1.33866 1.21472 0.90757 0.90787 0.96364 1.23806 1.00183 0.98699 0.94621 1.22350 0.99012 0.88334 0.85961 1.45999 1.73828 1.11179 1.02943 1.19079 1.36396 0.96173 0.83295 0.90196 1.24792 1.01695 0.96240 0.97865 1.69826 1.48332 1.09668 1.29062 0.86044 0.77295 0.78372 0.84042 1.20461 1.21751 1.21700 1.22484 0.95307 0.95873 0.86155 0.91209 0.91495 0.90875 0.84272 0.81896 0.87751 0.87188 0.76219 0.91930 0.91370 0.89194 0.95506 0.90971 0.93723 0.93667 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.72 36.00 0.35 -0.50 16 2 C -0.10 -0.98 5.80 -106.25 -0.62 -1.60 16 3 C -0.13 -1.10 9.98 -41.21 -0.41 -1.52 16 4 C -0.22 -1.76 11.23 29.04 0.33 -1.43 16 5 S 0.10 0.83 22.16 -107.50 -2.38 -1.55 16 6 C -0.15 -1.50 6.13 -36.00 -0.22 -1.72 16 7 C -0.05 -0.53 4.98 -91.77 -0.46 -0.99 16 8 H 0.14 1.53 7.07 -51.93 -0.37 1.17 16 9 C -0.14 -1.29 9.75 -26.70 -0.26 -1.55 16 10 C -0.17 -1.87 5.90 -91.74 -0.54 -2.41 16 11 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 12 C 0.54 7.49 7.61 -10.99 -0.08 7.41 16 13 O -0.55 -9.36 16.26 5.56 0.09 -9.27 16 14 N -0.72 -9.63 5.56 -60.30 -0.33 -9.97 16 15 C 0.13 2.00 5.51 -4.04 -0.02 1.98 16 16 C -0.15 -2.70 3.93 -89.69 -0.35 -3.06 16 17 C 0.17 3.86 7.08 -2.84 -0.02 3.84 16 18 N -0.61 -15.69 3.70 -177.71 -0.66 -16.35 16 19 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 20 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.92 -27.24 11.39 55.49 0.63 -26.61 16 23 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 C 0.13 2.57 8.51 -2.97 -0.03 2.55 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.50 8.13 -51.92 -0.42 0.08 16 30 H 0.07 0.72 7.25 -51.93 -0.38 0.35 16 31 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.10 0.80 7.27 -51.93 -0.38 0.42 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 4.70 8.47 -40.82 -0.35 4.35 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.15 7.87 -51.93 -0.41 0.75 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.03 0.64 7.92 -51.92 -0.41 0.23 16 40 H 0.07 1.81 7.17 -51.93 -0.37 1.44 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -32.97 372.62 -11.08 -44.05 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.43 Total: 2.72 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.59 Total: -5.78 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.36 Total: -52.92 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.38 Total: -1.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.97 -11.08 -44.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031666408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.381 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds